ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah63j03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102429.1| Oryza sativa (japonica cultivar-group) cDNA clon... 507 e-140
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 383 e-103
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 383 e-103
4emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb... 383 e-103
5ref|NM_101930.3| Arabidopsis thaliana ubiquitin-protein ligase A... 44 0.53
6gb|AC159273.4| Mus musculus BAC clone RP23-391G8 from chromosome... 44 0.53
7gb|AY096753.1| Arabidopsis thaliana unknown protein (At1g20780) ... 44 0.53
8gb|AY059775.1| Arabidopsis thaliana unknown protein (At1g20780) ... 44 0.53
9gb|AC093469.11| Mus musculus chromosome 7, clone RP23-21I4, comp... 44 0.53
10gb|AC069251.5|AC069251 Genomic sequence for Arabidopsis thaliana... 44 0.53
11gb|AC131743.3| Mus musculus BAC clone RP23-68K21 from chromosome... 42 2.1
12gb|AC125484.4| Mus musculus BAC clone RP23-127L14 from chromosom... 42 2.1
13gb|AC152348.7| Medicago truncatula clone mth2-52e17, complete se... 42 2.1
14gb|AC140033.3| Medicago truncatula clone mth2-24f11, complete se... 42 2.1
15gb|AC140025.7| Medicago truncatula clone mth2-11i16, complete se... 42 2.1
16emb|AL008732.1|HS67M12 Human DNA sequence from clone RP1-67M12 o... 42 2.1
17ref|XM_790565.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 2.1
18emb|CR380956.1| Candida glabrata strain CBS138 chromosome J comp... 42 2.1
19gb|AC160836.12| Medicago truncatula clone mth2-115l23, complete ... 42 2.1
20dbj|AK037522.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 42 2.1
21dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
22dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
23dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete... 42 2.1
24emb|BX927409.14| Zebrafish DNA sequence from clone DKEY-89L19 in... 42 2.1
25gb|AC126694.4| Mus musculus BAC clone RP23-310G20 from 17, compl... 42 2.1
26gb|AC161375.4| Mus musculus BAC clone RP23-297A22 from chromosom... 40 8.2
27ref|XM_386762.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 40 8.2
28emb|CR545479.12| Zebrafish DNA sequence from clone CH211-219M24 ... 40 8.2
29gb|AC123534.3| Mus musculus BAC clone RP23-356I5 from chromosome... 40 8.2
30emb|AL160408.24| Human DNA sequence from clone RP4-781K5 on chro... 40 8.2
31emb|AL050337.6|HSJ503F13 Human DNA sequence from clone RP3-503F1... 40 8.2
32emb|X64275.1|SV41RNA Simian parainfluenza virus 41 NP, P-V, M, F... 40 8.2
33emb|AL772364.20| Mouse DNA sequence from clone RP23-242C19 on ch... 40 8.2
34gb|BC074042.1| Danio rerio zgc:91897, mRNA (cDNA clone MGC:91897... 40 8.2
35gb|AC138665.11| Mus musculus chromosome 3, clone RP24-161I8, com... 40 8.2
36ref|NM_001002302.1| Danio rerio zgc:91897 (zgc:91897), mRNA 40 8.2
37gb|AC091646.6| Homo sapiens chromosome 18, clone RP11-433A23, co... 40 8.2
38gb|AC096865.2| Homo sapiens chromosome 18 clone RP11-600G22, com... 40 8.2
39gb|AC048344.44| Homo sapiens 12 BAC RP11-843B15 (Roswell Park Ca... 40 8.2
40gb|AC110614.4| Homo sapiens BAC clone RP11-453D22 from 2, comple... 40 8.2
41gb|AC153593.4| Mus musculus 6 BAC RP23-131B11 (Roswell Park Canc... 40 8.2
42gb|AC132443.3| Mus musculus BAC clone RP23-157C23 from 6, comple... 40 8.2
43emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 8.2 
>dbj|AK102429.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093H07, full
            insert sequence
          Length = 3398

 Score =  507 bits (256), Expect = e-140
 Identities = 518/604 (85%), Gaps = 1/604 (0%)
 Strand = Plus / Plus

                                                                        
Query: 2    acaaattatgcgggatcctgtcactttagnagagtggtgctacatttgaacgtgaagcca 61
            |||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |
Sbjct: 679  acaagttatgcgggatcctgtcactatag-agagtggtgccacatttgaacgtgaagcta 737

                                                                        
Query: 62   ttttgaagtggttcaaggaatctgatagcagtggaaggagccttgtctgccctattacta 121
            || ||||||||||||||||   || |||| |||| ||||| |||||||||||| ||||||
Sbjct: 738  ttctgaagtggttcaaggacaatggtagcggtgggaggagacttgtctgccctgttacta 797

                                                                        
Query: 122  ggaaggagctcagcagcactgagttgaatccaagtattgctctgagaaacactattgatg 181
              ||||| |||||||| |||||||| |||||||||||||||||| | || || |||||||
Sbjct: 798  ataaggaactcagcagtactgagttaaatccaagtattgctctgcggaataccattgatg 857

                                                                        
Query: 182  aatggatgcataggaatcaggcagctaaacttgatgtagcccgtaaatccttaacttctg 241
            ||||||||||||| ||| ||||||| |||||||| || |||||||| || ||||| ||||
Sbjct: 858  aatggatgcatagaaatgaggcagcgaaacttgacgttgcccgtaagtcattaacctctg 917

                                                                        
Query: 242  agaattcagaacatgatactttgcaagcacttgaatatgttgtggagatatgtcagagaa 301
            |   |||||||  ||||| ||||||||| ||||| ||||||| ||||||||| |||||||
Sbjct: 918  attgttcagaaggtgatattttgcaagctcttgagtatgttgcggagatatgccagagaa 977

                                                                        
Query: 302  gtagatccagcagacatgtagtgaggaagcttggcttgataagcttaatttctgagctgt 361
            |||||||||| |||||| ||||||||||  |||| ||||| ||||| ||| ||||  |||
Sbjct: 978  gtagatccagtagacatttagtgaggaaagttgggttgattagcttgattactgacttgt 1037

                                                                        
Query: 362  tgaagaatagtagtacaaaagtacggcaaaaggcattggaaagtctttgctttatagcta 421
            |||||||||| ||| |||||||||| ||||||||||||| ||| ||| ||||| |||| |
Sbjct: 1038 tgaagaatagcagtccaaaagtacgtcaaaaggcattgggaagccttcgctttgtagcaa 1097

                                                                        
Query: 422  aagatgacaatgataacaaggatgagattgctgccggggacaacattcgcacaatagtga 481
            || |||||||||| |||||| |||| |||||||| |||||||| |||||||| || ||||
Sbjct: 1098 aaaatgacaatgacaacaagaatgaaattgctgctggggacaatattcgcactattgtga 1157

                                                                        
Query: 482  agttcttatctcatggccacgtccaagagaaagaacaggctgcatctctgttatatgaac 541
            ||||||||  |||||| |||   || |||||||||||||||| |||| ||||||||||||
Sbjct: 1158 agttcttaaatcatgggcactcacaggagaaagaacaggctgtatctttgttatatgaac 1217

                                                                        
Query: 542  tttcacaatataaacctctttcagaaaaaattgggagcgttcctggggccatacttatac 601
            ||||| |||||||||||||||| ||||| ||||| || ||| |||| || || ||||| |
Sbjct: 1218 tttcagaatataaacctctttcggaaaagattggcagtgtttctggtgctattcttattc 1277

                
Query: 602  ttgt 605
            ||||
Sbjct: 1278 ttgt 1281
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  383 bits (193), Expect = e-103
 Identities = 380/441 (86%), Gaps = 1/441 (0%)
 Strand = Plus / Minus

                                                                            
Query: 2        acaaattatgcgggatcctgtcactttagnagagtggtgctacatttgaacgtgaagcca 61
                |||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |
Sbjct: 10284187 acaagttatgcgggatcctgtcactatag-agagtggtgccacatttgaacgtgaagcta 10284129

                                                                            
Query: 62       ttttgaagtggttcaaggaatctgatagcagtggaaggagccttgtctgccctattacta 121
                || ||||||||||||||||   || |||| |||| ||||| |||||||||||| ||||||
Sbjct: 10284128 ttctgaagtggttcaaggacaatggtagcggtgggaggagacttgtctgccctgttacta 10284069

                                                                            
Query: 122      ggaaggagctcagcagcactgagttgaatccaagtattgctctgagaaacactattgatg 181
                  ||||| |||||||| |||||||| |||||||||||||||||| | || || |||||||
Sbjct: 10284068 ataaggaactcagcagtactgagttaaatccaagtattgctctgcggaataccattgatg 10284009

                                                                            
Query: 182      aatggatgcataggaatcaggcagctaaacttgatgtagcccgtaaatccttaacttctg 241
                ||||||||||||| ||| ||||||| |||||||| || |||||||| || ||||| ||||
Sbjct: 10284008 aatggatgcatagaaatgaggcagcgaaacttgacgttgcccgtaagtcattaacctctg 10283949

                                                                            
Query: 242      agaattcagaacatgatactttgcaagcacttgaatatgttgtggagatatgtcagagaa 301
                |   |||||||  ||||| ||||||||| ||||| ||||||| ||||||||| |||||||
Sbjct: 10283948 attgttcagaaggtgatattttgcaagctcttgagtatgttgcggagatatgccagagaa 10283889

                                                                            
Query: 302      gtagatccagcagacatgtagtgaggaagcttggcttgataagcttaatttctgagctgt 361
                |||||||||| |||||| ||||||||||  |||| ||||| ||||| ||| ||||  |||
Sbjct: 10283888 gtagatccagtagacatttagtgaggaaagttgggttgattagcttgattactgacttgt 10283829

                                                                            
Query: 362      tgaagaatagtagtacaaaagtacggcaaaaggcattggaaagtctttgctttatagcta 421
                |||||||||| ||| |||||||||| ||||||||||||| ||| ||| ||||| |||| |
Sbjct: 10283828 tgaagaatagcagtccaaaagtacgtcaaaaggcattgggaagccttcgctttgtagcaa 10283769

                                     
Query: 422      aagatgacaatgataacaagg 442
                || |||||||||| |||||||
Sbjct: 10283768 aaaatgacaatgacaacaagg 10283748



 Score =  133 bits (67), Expect = 7e-28
 Identities = 139/163 (85%)
 Strand = Plus / Minus

                                                                            
Query: 443      atgagattgctgccggggacaacattcgcacaatagtgaagttcttatctcatggccacg 502
                |||| |||||||| |||||||| |||||||| || ||||||||||||  |||||| ||| 
Sbjct: 10283667 atgaaattgctgctggggacaatattcgcactattgtgaagttcttaaatcatgggcact 10283608

                                                                            
Query: 503      tccaagagaaagaacaggctgcatctctgttatatgaactttcacaatataaacctcttt 562
                  || |||||||||||||||| |||| ||||||||||||||||| |||||||||||||||
Sbjct: 10283607 cacaggagaaagaacaggctgtatctttgttatatgaactttcagaatataaacctcttt 10283548

                                                           
Query: 563      cagaaaaaattgggagcgttcctggggccatacttatacttgt 605
                | ||||| ||||| || ||| |||| || || ||||| |||||
Sbjct: 10283547 cggaaaagattggcagtgtttctggtgctattcttattcttgt 10283505
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  383 bits (193), Expect = e-103
 Identities = 380/441 (86%), Gaps = 1/441 (0%)
 Strand = Plus / Minus

                                                                            
Query: 2        acaaattatgcgggatcctgtcactttagnagagtggtgctacatttgaacgtgaagcca 61
                |||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |
Sbjct: 10284069 acaagttatgcgggatcctgtcactatag-agagtggtgccacatttgaacgtgaagcta 10284011

                                                                            
Query: 62       ttttgaagtggttcaaggaatctgatagcagtggaaggagccttgtctgccctattacta 121
                || ||||||||||||||||   || |||| |||| ||||| |||||||||||| ||||||
Sbjct: 10284010 ttctgaagtggttcaaggacaatggtagcggtgggaggagacttgtctgccctgttacta 10283951

                                                                            
Query: 122      ggaaggagctcagcagcactgagttgaatccaagtattgctctgagaaacactattgatg 181
                  ||||| |||||||| |||||||| |||||||||||||||||| | || || |||||||
Sbjct: 10283950 ataaggaactcagcagtactgagttaaatccaagtattgctctgcggaataccattgatg 10283891

                                                                            
Query: 182      aatggatgcataggaatcaggcagctaaacttgatgtagcccgtaaatccttaacttctg 241
                ||||||||||||| ||| ||||||| |||||||| || |||||||| || ||||| ||||
Sbjct: 10283890 aatggatgcatagaaatgaggcagcgaaacttgacgttgcccgtaagtcattaacctctg 10283831

                                                                            
Query: 242      agaattcagaacatgatactttgcaagcacttgaatatgttgtggagatatgtcagagaa 301
                |   |||||||  ||||| ||||||||| ||||| ||||||| ||||||||| |||||||
Sbjct: 10283830 attgttcagaaggtgatattttgcaagctcttgagtatgttgcggagatatgccagagaa 10283771

                                                                            
Query: 302      gtagatccagcagacatgtagtgaggaagcttggcttgataagcttaatttctgagctgt 361
                |||||||||| |||||| ||||||||||  |||| ||||| ||||| ||| ||||  |||
Sbjct: 10283770 gtagatccagtagacatttagtgaggaaagttgggttgattagcttgattactgacttgt 10283711

                                                                            
Query: 362      tgaagaatagtagtacaaaagtacggcaaaaggcattggaaagtctttgctttatagcta 421
                |||||||||| ||| |||||||||| ||||||||||||| ||| ||| ||||| |||| |
Sbjct: 10283710 tgaagaatagcagtccaaaagtacgtcaaaaggcattgggaagccttcgctttgtagcaa 10283651

                                     
Query: 422      aagatgacaatgataacaagg 442
                || |||||||||| |||||||
Sbjct: 10283650 aaaatgacaatgacaacaagg 10283630



 Score =  133 bits (67), Expect = 7e-28
 Identities = 139/163 (85%)
 Strand = Plus / Minus

                                                                            
Query: 443      atgagattgctgccggggacaacattcgcacaatagtgaagttcttatctcatggccacg 502
                |||| |||||||| |||||||| |||||||| || ||||||||||||  |||||| ||| 
Sbjct: 10283549 atgaaattgctgctggggacaatattcgcactattgtgaagttcttaaatcatgggcact 10283490

                                                                            
Query: 503      tccaagagaaagaacaggctgcatctctgttatatgaactttcacaatataaacctcttt 562
                  || |||||||||||||||| |||| ||||||||||||||||| |||||||||||||||
Sbjct: 10283489 cacaggagaaagaacaggctgtatctttgttatatgaactttcagaatataaacctcttt 10283430

                                                           
Query: 563      cagaaaaaattgggagcgttcctggggccatacttatacttgt 605
                | ||||| ||||| || ||| |||| || || ||||| |||||
Sbjct: 10283429 cggaaaagattggcagtgtttctggtgctattcttattcttgt 10283387
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>emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb0115B15 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 135439

 Score =  383 bits (193), Expect = e-103
 Identities = 380/441 (86%), Gaps = 1/441 (0%)
 Strand = Plus / Minus

                                                                         
Query: 2     acaaattatgcgggatcctgtcactttagnagagtggtgctacatttgaacgtgaagcca 61
             |||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |
Sbjct: 47106 acaagttatgcgggatcctgtcactatag-agagtggtgccacatttgaacgtgaagcta 47048

                                                                         
Query: 62    ttttgaagtggttcaaggaatctgatagcagtggaaggagccttgtctgccctattacta 121
             || ||||||||||||||||   || |||| |||| ||||| |||||||||||| ||||||
Sbjct: 47047 ttctgaagtggttcaaggacaatggtagcggtgggaggagacttgtctgccctgttacta 46988

                                                                         
Query: 122   ggaaggagctcagcagcactgagttgaatccaagtattgctctgagaaacactattgatg 181
               ||||| |||||||| |||||||| |||||||||||||||||| | || || |||||||
Sbjct: 46987 ataaggaactcagcagtactgagttaaatccaagtattgctctgcggaataccattgatg 46928

                                                                         
Query: 182   aatggatgcataggaatcaggcagctaaacttgatgtagcccgtaaatccttaacttctg 241
             ||||||||||||| ||| ||||||| |||||||| || |||||||| || ||||| ||||
Sbjct: 46927 aatggatgcatagaaatgaggcagcgaaacttgacgttgcccgtaagtcattaacctctg 46868

                                                                         
Query: 242   agaattcagaacatgatactttgcaagcacttgaatatgttgtggagatatgtcagagaa 301
             |   |||||||  ||||| ||||||||| ||||| ||||||| ||||||||| |||||||
Sbjct: 46867 attgttcagaaggtgatattttgcaagctcttgagtatgttgcggagatatgccagagaa 46808

                                                                         
Query: 302   gtagatccagcagacatgtagtgaggaagcttggcttgataagcttaatttctgagctgt 361
             |||||||||| |||||| ||||||||||  |||| ||||| ||||| ||| ||||  |||
Sbjct: 46807 gtagatccagtagacatttagtgaggaaagttgggttgattagcttgattactgacttgt 46748

                                                                         
Query: 362   tgaagaatagtagtacaaaagtacggcaaaaggcattggaaagtctttgctttatagcta 421
             |||||||||| ||| |||||||||| ||||||||||||| ||| ||| ||||| |||| |
Sbjct: 46747 tgaagaatagcagtccaaaagtacgtcaaaaggcattgggaagccttcgctttgtagcaa 46688

                                  
Query: 422   aagatgacaatgataacaagg 442
             || |||||||||| |||||||
Sbjct: 46687 aaaatgacaatgacaacaagg 46667



 Score =  133 bits (67), Expect = 7e-28
 Identities = 139/163 (85%)
 Strand = Plus / Minus

                                                                         
Query: 443   atgagattgctgccggggacaacattcgcacaatagtgaagttcttatctcatggccacg 502
             |||| |||||||| |||||||| |||||||| || ||||||||||||  |||||| ||| 
Sbjct: 46586 atgaaattgctgctggggacaatattcgcactattgtgaagttcttaaatcatgggcact 46527

                                                                         
Query: 503   tccaagagaaagaacaggctgcatctctgttatatgaactttcacaatataaacctcttt 562
               || |||||||||||||||| |||| ||||||||||||||||| |||||||||||||||
Sbjct: 46526 cacaggagaaagaacaggctgtatctttgttatatgaactttcagaatataaacctcttt 46467

                                                        
Query: 563   cagaaaaaattgggagcgttcctggggccatacttatacttgt 605
             | ||||| ||||| || ||| |||| || || ||||| |||||
Sbjct: 46466 cggaaaagattggcagtgtttctggtgctattcttattcttgt 46424
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>ref|NM_101930.3| Arabidopsis thaliana ubiquitin-protein ligase AT1G20780 mRNA,
           complete cds
          Length = 2877

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 56/66 (84%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                       
Query: 15  gatcctgtcactttagnagagtggtgctacatttgaacgtgaagccattttgaagtggtt 74
           |||||||||||||||| ||| ||||   ||||| || ||||||||||||  ||| |||||
Sbjct: 408 gatcctgtcactttag-agaatggtcgaacattcgagcgtgaagccattgagaaatggtt 466

                 
Query: 75  caagga 80
           ||||||
Sbjct: 467 caagga 472
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>gb|AC159273.4| Mus musculus BAC clone RP23-391G8 from chromosome 7, complete
            sequence
          Length = 227709

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 131  tcagcagcactgagttgaatccaagt 156
            |||||||||||||||||||| |||||
Sbjct: 9031 tcagcagcactgagttgaatacaagt 9056
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>gb|AY096753.1| Arabidopsis thaliana unknown protein (At1g20780) mRNA, complete cds
          Length = 1183

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 56/66 (84%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                       
Query: 15  gatcctgtcactttagnagagtggtgctacatttgaacgtgaagccattttgaagtggtt 74
           |||||||||||||||| ||| ||||   ||||| || ||||||||||||  ||| |||||
Sbjct: 112 gatcctgtcactttag-agaatggtcgaacattcgagcgtgaagccattgagaaatggtt 170

                 
Query: 75  caagga 80
           ||||||
Sbjct: 171 caagga 176
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>gb|AY059775.1| Arabidopsis thaliana unknown protein (At1g20780) mRNA, complete cds
          Length = 2798

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 56/66 (84%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                       
Query: 15  gatcctgtcactttagnagagtggtgctacatttgaacgtgaagccattttgaagtggtt 74
           |||||||||||||||| ||| ||||   ||||| || ||||||||||||  ||| |||||
Sbjct: 408 gatcctgtcactttag-agaatggtcgaacattcgagcgtgaagccattgagaaatggtt 466

                 
Query: 75  caagga 80
           ||||||
Sbjct: 467 caagga 472
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>gb|AC093469.11| Mus musculus chromosome 7, clone RP23-21I4, complete sequence
          Length = 215022

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 131    tcagcagcactgagttgaatccaagt 156
              |||||||||||||||||||| |||||
Sbjct: 165933 tcagcagcactgagttgaatacaagt 165958
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>gb|AC069251.5|AC069251 Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I,
              complete sequence
          Length = 143879

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 56/66 (84%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                          
Query: 15     gatcctgtcactttagnagagtggtgctacatttgaacgtgaagccattttgaagtggtt 74
              |||||||||||||||| ||| ||||   ||||| || ||||||||||||  ||| |||||
Sbjct: 108380 gatcctgtcactttag-agaatggtcgaacattcgagcgtgaagccattgagaaatggtt 108438

                    
Query: 75     caagga 80
              ||||||
Sbjct: 108439 caagga 108444
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>gb|AC131743.3| Mus musculus BAC clone RP23-68K21 from chromosome 13, complete sequence
          Length = 235930

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 99     gagccttgtctgccctattac 119
              |||||||||||||||||||||
Sbjct: 228179 gagccttgtctgccctattac 228199
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>gb|AC125484.4| Mus musculus BAC clone RP23-127L14 from chromosome 13, complete sequence
          Length = 207318

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 99     gagccttgtctgccctattac 119
              |||||||||||||||||||||
Sbjct: 179569 gagccttgtctgccctattac 179549
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>gb|AC152348.7| Medicago truncatula clone mth2-52e17, complete sequence
          Length = 122070

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 200   aggcagctaaacttgatgtag 220
             |||||||||||||||||||||
Sbjct: 33902 aggcagctaaacttgatgtag 33882
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>gb|AC140033.3| Medicago truncatula clone mth2-24f11, complete sequence
          Length = 120384

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 54     tgaagccattttgaagtggtt 74
              |||||||||||||||||||||
Sbjct: 115614 tgaagccattttgaagtggtt 115594
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>gb|AC140025.7| Medicago truncatula clone mth2-11i16, complete sequence
          Length = 130592

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 54    tgaagccattttgaagtggtt 74
             |||||||||||||||||||||
Sbjct: 65068 tgaagccattttgaagtggtt 65048
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>emb|AL008732.1|HS67M12 Human DNA sequence from clone RP1-67M12 on chromosome 6p22.1-22.3
             Contains part of a novel gene, complete sequence
          Length = 103268

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 175   attgatgaatggatgcatagg 195
             |||||||||||||||||||||
Sbjct: 62389 attgatgaatggatgcatagg 62369
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>ref|XM_790565.1| PREDICTED: Strongylocentrotus purpuratus similar to Rho guanine
           nucleotide exchange factor (GEF) 17 (LOC590980), mRNA
          Length = 2439

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 351 ttctgagctgttgaagaatag 371
           |||||||||||||||||||||
Sbjct: 729 ttctgagctgttgaagaatag 709
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>emb|CR380956.1| Candida glabrata strain CBS138 chromosome J complete sequence
          Length = 1192501

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 361    ttgaagaatagtagtacaaaa 381
              |||||||||||||||||||||
Sbjct: 524492 ttgaagaatagtagtacaaaa 524472
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>gb|AC160836.12| Medicago truncatula clone mth2-115l23, complete sequence
          Length = 116158

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 200   aggcagctaaacttgatgtag 220
             |||||||||||||||||||||
Sbjct: 15151 aggcagctaaacttgatgtag 15171
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>dbj|AK037522.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A130023E24 product:hypothetical protein,
            full insert sequence
          Length = 2270

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 99   gagccttgtctgccctattac 119
            |||||||||||||||||||||
Sbjct: 1519 gagccttgtctgccctattac 1499
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 359      tgttgaagaatagtagtacaa 379
                |||||||||||||||||||||
Sbjct: 42320176 tgttgaagaatagtagtacaa 42320156
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>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0401G10
          Length = 160704

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 359   tgttgaagaatagtagtacaa 379
             |||||||||||||||||||||
Sbjct: 92133 tgttgaagaatagtagtacaa 92113
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>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 127     gagctcagcagcactgagttg 147
               |||||||||||||||||||||
Sbjct: 2436181 gagctcagcagcactgagttg 2436201
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>emb|BX927409.14| Zebrafish DNA sequence from clone DKEY-89L19 in linkage group 17,
             complete sequence
          Length = 154287

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 266   aagcacttgaatatgttgtgg 286
             |||||||||||||||||||||
Sbjct: 87633 aagcacttgaatatgttgtgg 87653
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>gb|AC126694.4| Mus musculus BAC clone RP23-310G20 from 17, complete sequence
          Length = 232041

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 125    aggagctcagcagcactgagt 145
              |||||||||||||||||||||
Sbjct: 145678 aggagctcagcagcactgagt 145658
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>gb|AC161375.4| Mus musculus BAC clone RP23-297A22 from chromosome 14, complete sequence
          Length = 211662

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     aaggaatctgatagcagtgg 95
              ||||||||||||||||||||
Sbjct: 169787 aaggaatctgatagcagtgg 169768
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>ref|XM_386762.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG06586.1)
           partial mRNA
          Length = 1809

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 438 caaggatgagattgctgccg 457
           ||||||||||||||||||||
Sbjct: 282 caaggatgagattgctgccg 301
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>emb|CR545479.12| Zebrafish DNA sequence from clone CH211-219M24 in linkage group 17,
              complete sequence
          Length = 188250

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 239    ctgagaattcagaacatgatactt 262
              |||||||||||||||||| |||||
Sbjct: 164697 ctgagaattcagaacatgctactt 164720
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>gb|AC123534.3| Mus musculus BAC clone RP23-356I5 from chromosome 14, complete
            sequence
          Length = 205222

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   aaggaatctgatagcagtgg 95
            ||||||||||||||||||||
Sbjct: 4492 aaggaatctgatagcagtgg 4473
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>emb|AL160408.24| Human DNA sequence from clone RP4-781K5 on chromosome 1q42.1-43,
             complete sequence
          Length = 132887

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   taacttctgagaattcagaa 252
             ||||||||||||||||||||
Sbjct: 53308 taacttctgagaattcagaa 53327
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>emb|AL050337.6|HSJ503F13 Human DNA sequence from clone RP3-503F13 on chromosome 6q24.1-25.2
              Contains the IFNGR1 gene for interferon gamma receptor 1,
              the gene for class II cytokine receptor (IL22RA2)
              (interleukin 22-binding protein, IL22BP) and a putative CpG
              island, complete sequence
          Length = 113811

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 228    atccttaacttctgagaatt 247
              ||||||||||||||||||||
Sbjct: 100953 atccttaacttctgagaatt 100934
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>emb|X64275.1|SV41RNA Simian parainfluenza virus 41 NP, P-V, M, F, HN and L genes, genomic
            RNA
          Length = 15450

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 168  aaacactattgatgaatgga 187
            ||||||||||||||||||||
Sbjct: 8896 aaacactattgatgaatgga 8915
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>emb|AL772364.20| Mouse DNA sequence from clone RP23-242C19 on chromosome 11 Contains a
              ribosomal protein S16 (Rps16) pseudogene, the B3gnt1 gene
              for beta-1,3-N-acetylglucosaminyltransferase 1, the Murr1
              gene for U2af1-rs1 region 1, the U2af1-rs1 gene for U2
              small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
              (related sequence 1) and two CpG islands, complete sequence
          Length = 210863

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 257    atactttgcaagcacttgaa 276
              ||||||||||||||||||||
Sbjct: 111655 atactttgcaagcacttgaa 111636
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>gb|BC074042.1| Danio rerio zgc:91897, mRNA (cDNA clone MGC:91897 IMAGE:7039449),
           complete cds
          Length = 2210

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 129 gctcagcagcactgagttgaatcc 152
           ||||||||||||||||| ||||||
Sbjct: 189 gctcagcagcactgagtagaatcc 166
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>gb|AC138665.11| Mus musculus chromosome 3, clone RP24-161I8, complete sequence
          Length = 168293

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   ctgagaaacactattgatga 182
             ||||||||||||||||||||
Sbjct: 67825 ctgagaaacactattgatga 67806
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>ref|NM_001002302.1| Danio rerio zgc:91897 (zgc:91897), mRNA
          Length = 2175

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 129 gctcagcagcactgagttgaatcc 152
           ||||||||||||||||| ||||||
Sbjct: 189 gctcagcagcactgagtagaatcc 166
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>gb|AC091646.6| Homo sapiens chromosome 18, clone RP11-433A23, complete sequence
          Length = 187755

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    agaattcagaacatgatact 261
              ||||||||||||||||||||
Sbjct: 117812 agaattcagaacatgatact 117793
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>gb|AC096865.2| Homo sapiens chromosome 18 clone RP11-600G22, complete sequence
          Length = 194277

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   agaattcagaacatgatact 261
             ||||||||||||||||||||
Sbjct: 88782 agaattcagaacatgatact 88801
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>gb|AC048344.44| Homo sapiens 12 BAC RP11-843B15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 124427

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 546    acaatataaacctctttcag 565
              ||||||||||||||||||||
Sbjct: 113176 acaatataaacctctttcag 113157
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>gb|AC110614.4| Homo sapiens BAC clone RP11-453D22 from 2, complete sequence
          Length = 185018

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 228    atccttaacttctgagaatt 247
              ||||||||||||||||||||
Sbjct: 119366 atccttaacttctgagaatt 119347
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>gb|AC153593.4| Mus musculus 6 BAC RP23-131B11 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 205164

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   cttctgagaattcagaacat 255
             ||||||||||||||||||||
Sbjct: 46685 cttctgagaattcagaacat 46704
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>gb|AC132443.3| Mus musculus BAC clone RP23-157C23 from 6, complete sequence
          Length = 179231

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   cttctgagaattcagaacat 255
             ||||||||||||||||||||
Sbjct: 18069 cttctgagaattcagaacat 18050
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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 462     caacattcgcacaatagtga 481
               ||||||||||||||||||||
Sbjct: 2255243 caacattcgcacaatagtga 2255262


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,737,287
Number of Sequences: 3902068
Number of extensions: 5737287
Number of successful extensions: 119545
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 119355
Number of HSP's gapped (non-prelim): 186
length of query: 605
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 582
effective length of database: 17,143,297,704
effective search space: 9977399263728
effective search space used: 9977399263728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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