ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63i24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478188.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4057 Score = 143 bits (72), Expect = 8e-31 Identities = 126/144 (87%) Strand = Plus / Plus Query: 490 actagaaatggaggaaaatgaagggtgtgccccaaggaagtactatgagtatttgcactc 549 ||||||||| ||||||||||||||||||| |||| ||||||||| || |||||||| || Sbjct: 863 actagaaattgaggaaaatgaagggtgtgttccaaagaagtactacgaatatttgcagtc 922 Query: 550 cctaaatgacaagcagagggaggcttcatgtagtgatgtagctgttccgttaatgatcgt 609 ||| ||||||| ||||||||| ||| ||||||||||||| || |||| ||||||| || Sbjct: 923 cctgaatgacaggcagagggaagctgcatgtagtgatgtgactattccactaatgatagt 982 Query: 610 tgcaggtccaggaagtggaaagac 633 ||| |||||||||||||||||||| Sbjct: 983 tgctggtccaggaagtggaaagac 1006
>dbj|AK067461.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102E06, full insert sequence Length = 4056 Score = 143 bits (72), Expect = 8e-31 Identities = 126/144 (87%) Strand = Plus / Plus Query: 490 actagaaatggaggaaaatgaagggtgtgccccaaggaagtactatgagtatttgcactc 549 ||||||||| ||||||||||||||||||| |||| ||||||||| || |||||||| || Sbjct: 862 actagaaattgaggaaaatgaagggtgtgttccaaagaagtactacgaatatttgcagtc 921 Query: 550 cctaaatgacaagcagagggaggcttcatgtagtgatgtagctgttccgttaatgatcgt 609 ||| ||||||| ||||||||| ||| ||||||||||||| || |||| ||||||| || Sbjct: 922 cctgaatgacaggcagagggaagctgcatgtagtgatgtgactattccactaatgatagt 981 Query: 610 tgcaggtccaggaagtggaaagac 633 ||| |||||||||||||||||||| Sbjct: 982 tgctggtccaggaagtggaaagac 1005
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 139 bits (70), Expect = 1e-29 Identities = 124/142 (87%) Strand = Plus / Minus Query: 490 actagaaatggaggaaaatgaagggtgtgccccaaggaagtactatgagtatttgcactc 549 ||||||||| ||||||||||||||||||| |||| ||||||||| || |||||||| || Sbjct: 18296270 actagaaattgaggaaaatgaagggtgtgttccaaagaagtactacgaatatttgcagtc 18296211 Query: 550 cctaaatgacaagcagagggaggcttcatgtagtgatgtagctgttccgttaatgatcgt 609 ||| ||||||| ||||||||| ||| ||||||||||||| || |||| ||||||| || Sbjct: 18296210 cctgaatgacaggcagagggaagctgcatgtagtgatgtgactattccactaatgatagt 18296151 Query: 610 tgcaggtccaggaagtggaaag 631 ||| |||||||||||||||||| Sbjct: 18296150 tgctggtccaggaagtggaaag 18296129
>dbj|AP004051.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1218_C12 Length = 105861 Score = 139 bits (70), Expect = 1e-29 Identities = 124/142 (87%) Strand = Plus / Minus Query: 490 actagaaatggaggaaaatgaagggtgtgccccaaggaagtactatgagtatttgcactc 549 ||||||||| ||||||||||||||||||| |||| ||||||||| || |||||||| || Sbjct: 99513 actagaaattgaggaaaatgaagggtgtgttccaaagaagtactacgaatatttgcagtc 99454 Query: 550 cctaaatgacaagcagagggaggcttcatgtagtgatgtagctgttccgttaatgatcgt 609 ||| ||||||| ||||||||| ||| ||||||||||||| || |||| ||||||| || Sbjct: 99453 cctgaatgacaggcagagggaagctgcatgtagtgatgtgactattccactaatgatagt 99394 Query: 610 tgcaggtccaggaagtggaaag 631 ||| |||||||||||||||||| Sbjct: 99393 tgctggtccaggaagtggaaag 99372
>dbj|AP004266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0038F10 Length = 153929 Score = 139 bits (70), Expect = 1e-29 Identities = 124/142 (87%) Strand = Plus / Minus Query: 490 actagaaatggaggaaaatgaagggtgtgccccaaggaagtactatgagtatttgcactc 549 ||||||||| ||||||||||||||||||| |||| ||||||||| || |||||||| || Sbjct: 25765 actagaaattgaggaaaatgaagggtgtgttccaaagaagtactacgaatatttgcagtc 25706 Query: 550 cctaaatgacaagcagagggaggcttcatgtagtgatgtagctgttccgttaatgatcgt 609 ||| ||||||| ||||||||| ||| ||||||||||||| || |||| ||||||| || Sbjct: 25705 cctgaatgacaggcagagggaagctgcatgtagtgatgtgactattccactaatgatagt 25646 Query: 610 tgcaggtccaggaagtggaaag 631 ||| |||||||||||||||||| Sbjct: 25645 tgctggtccaggaagtggaaag 25624
>emb|AL592285.7| Human DNA sequence from clone RP11-153I22 on chromosome 1 Contains part of the PDE4B gene for phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila), complete sequence Length = 152113 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 489 gactagaaatggaggaaaatga 510 |||||||||||||||||||||| Sbjct: 115037 gactagaaatggaggaaaatga 115058
>emb|AL158055.12| Human DNA sequence from clone RP11-348F1 on chromosome Xp11.1-11.22 Contains the NUDT11 gene for nudix (nucleoside diphosphate linked moiety X)-type motif 11, two novel genes, the NUDT10 gene for nudix (nucleoside diphosphate linked moiety X)-type motif 10 and three CpG islands, complete sequence Length = 184873 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 216 ttaagttggaggacactttctgggaa 241 |||||||||||| ||||||||||||| Sbjct: 138641 ttaagttggaggtcactttctgggaa 138616
>gb|AY430223.1| Sargocentron punctatissimum recombination activating protein 1 (RAG1) gene, partial cds Length = 1470 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 322 ccaggatgagatagaggaggtgtac 346 |||||||||||||| |||||||||| Sbjct: 948 ccaggatgagataggggaggtgtac 972
>gb|BC073349.1| Xenopus laevis MGC80764 protein, mRNA (cDNA clone MGC:80764 IMAGE:5512669), complete cds Length = 3192 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 gaaggagatgatggaagagga 150 ||||||||||||||||||||| Sbjct: 861 gaaggagatgatggaagagga 841
>ref|XM_415764.1| PREDICTED: Gallus gallus similar to hypothetical protein, MNCb-4760 (LOC417516), mRNA Length = 1920 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 ggagctgaaggagatgatggaagag 148 ||||||| ||||||||||||||||| Sbjct: 210 ggagctgcaggagatgatggaagag 234
>gb|BC060426.1| Xenopus laevis hypothetical protein MGC68724, mRNA (cDNA clone MGC:68724 IMAGE:4057122), complete cds Length = 1576 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 gaaggagatgatggaagagga 150 ||||||||||||||||||||| Sbjct: 742 gaaggagatgatggaagagga 722
>emb|AL033381.2|HS856G1 Human DNA sequence from clone RP5-856G1 on chromosome 6p24.1-25.3, complete sequence Length = 151795 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 492 tagaaatggaggaaaatgaag 512 ||||||||||||||||||||| Sbjct: 19487 tagaaatggaggaaaatgaag 19467
>gb|AC067981.6| Homo sapiens chromosome 18, clone RP11-805E19, complete sequence Length = 158750 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 487 gggactagaaatggaggaaaa 507 ||||||||||||||||||||| Sbjct: 19673 gggactagaaatggaggaaaa 19693
>gb|AC113137.2| Homo sapiens chromosome 18, clone RP11-622J9, complete sequence Length = 167694 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 gggactagaaatggaggaaaa 507 ||||||||||||||||||||| Sbjct: 73545 gggactagaaatggaggaaaa 73525
>emb|BX950667.2| Gallus gallus finished cDNA, clone ChEST386h5 Length = 865 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 ggagctgaaggagatgatggaagag 148 ||||||| ||||||||||||||||| Sbjct: 370 ggagctgcaggagatgatggaagag 394
>gb|AY308777.1| Siganus doliatus recombinase activating gene-1 (RAG1) gene, partial cds Length = 1455 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 ccaggatgagatagaggaggtgta 345 |||||||||||||| ||||||||| Sbjct: 930 ccaggatgagataggggaggtgta 953
>gb|BC032416.1| Homo sapiens serine/arginine repetitive matrix 2, mRNA (cDNA clone IMAGE:5215215), complete cds Length = 2267 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 gagctgaaggagatgatggaagag 148 |||||| ||||||||||||||||| Sbjct: 430 gagctggaggagatgatggaagag 453
>gb|BC007752.2| Homo sapiens serine/arginine repetitive matrix 2, mRNA (cDNA clone IMAGE:4110278), partial cds Length = 786 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 gagctgaaggagatgatggaagag 148 |||||| ||||||||||||||||| Sbjct: 415 gagctggaggagatgatggaagag 438
>gb|AC115830.6| Mus musculus chromosome 7, clone RP24-96A19, complete sequence Length = 153718 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 ccaggatgaggagctgaagg 134 |||||||||||||||||||| Sbjct: 23756 ccaggatgaggagctgaagg 23737
>gb|AC116768.9| Mus musculus chromosome 8, clone RP23-395P10, complete sequence Length = 191757 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aggagatgatggaagaggaa 151 |||||||||||||||||||| Sbjct: 174018 aggagatgatggaagaggaa 173999
>gb|AE010435.1| Methanopyrus kandleri AV19 section 134 of 157 of the complete genome Length = 11400 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 127 gctgaaggagatgatggaagagga 150 ||||||||||| |||||||||||| Sbjct: 5185 gctgaaggagaggatggaagagga 5162
>ref|XM_523881.1| PREDICTED: Pan troglodytes similar to Centrin 1 (Caltractin isoform 2) (LOC468492), mRNA Length = 519 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 ggatgaggagctgaaggagatgat 141 ||||||||||||| |||||||||| Sbjct: 414 ggatgaggagctgcaggagatgat 437
>gb|AC161528.14| Mus musculus chromosome 8, clone RP23-369H18, complete sequence Length = 206302 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 agctgaaggagatgatggaagagg 149 |||||||||||||| ||||||||| Sbjct: 25638 agctgaaggagatgttggaagagg 25615
>gb|AC136901.17| Mus musculus chromosome 3, clone RP24-510H14, complete sequence Length = 129686 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 gggaggagaggttgttgatg 428 |||||||||||||||||||| Sbjct: 9338 gggaggagaggttgttgatg 9357
>gb|AC161501.4| Mus musculus chromosome 3, clone RP24-150C17, complete sequence Length = 155378 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 gggaggagaggttgttgatg 428 |||||||||||||||||||| Sbjct: 108630 gggaggagaggttgttgatg 108649
>gb|AC004493.1| Homo sapiens chromosome 16, cosmid clone 373C8 (LANL), complete sequence Length = 43661 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 gagctgaaggagatgatggaagag 148 |||||| ||||||||||||||||| Sbjct: 20236 gagctggaggagatgatggaagag 20213
>gb|AC149231.2| Pan troglodytes BAC clone CH251-481H1 from 7, complete sequence Length = 217836 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gaagttaatgccatcagcaa 258 |||||||||||||||||||| Sbjct: 47824 gaagttaatgccatcagcaa 47843
>gb|AC136645.2| Rattus norvegicus 7 BAC CH230-156H17 (Children's Hospital Oakland Research Institute) complete sequence Length = 204000 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 gccaggatgaggagctgaaggaga 137 ||||||||| |||||||||||||| Sbjct: 150668 gccaggatgtggagctgaaggaga 150691
>gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic sequence, complete sequence Length = 175704 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 tgcggaggagggaggagagg 419 |||||||||||||||||||| Sbjct: 165913 tgcggaggagggaggagagg 165894
>ref|XM_420467.1| PREDICTED: Gallus gallus similar to Jade1 protein long isoform; gene for apoptosis and differentiation in epithelia (LOC422502), mRNA Length = 4996 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 ggaggaaaatgaagggtgtg 518 |||||||||||||||||||| Sbjct: 1664 ggaggaaaatgaagggtgtg 1645
>gb|AC128646.5| Oryza sativa chromosome 3 BAC OSJNBb0029I19 genomic sequence, complete sequence Length = 120254 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 tgcggaggagggaggagagg 419 |||||||||||||||||||| Sbjct: 4010 tgcggaggagggaggagagg 3991
>ref|XM_959184.1| Neurospora crassa OR74A hypothetical protein (NCU02782.1) partial mRNA Length = 2988 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gaggagggaggagaggttgt 423 |||||||||||||||||||| Sbjct: 2399 gaggagggaggagaggttgt 2380
>ref|XM_329969.1| Neurospora crassa OR74A hypothetical protein (NCU02782.1) partial mRNA Length = 2988 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gaggagggaggagaggttgt 423 |||||||||||||||||||| Sbjct: 2399 gaggagggaggagaggttgt 2380
>gb|AC134537.3| Mus musculus BAC clone RP24-388M1 from chromosome 12, complete sequence Length = 221662 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 gcttggtgctgtcctgtggt 172 |||||||||||||||||||| Sbjct: 121104 gcttggtgctgtcctgtggt 121123
>ref|NM_016333.2| Homo sapiens serine/arginine repetitive matrix 2 (SRRM2), mRNA Length = 9027 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 gagctgaaggagatgatggaagag 148 |||||| ||||||||||||||||| Sbjct: 439 gagctggaggagatgatggaagag 462
>ref|NM_004066.1| Homo sapiens centrin, EF-hand protein, 1 (CETN1), mRNA Length = 1161 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 ggatgaggagctgaaggagatgat 141 ||||||||||||| |||||||||| Sbjct: 456 ggatgaggagctgcaggagatgat 479
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 tgcggaggagggaggagagg 419 |||||||||||||||||||| Sbjct: 24469947 tgcggaggagggaggagagg 24469966
>emb|CT009518.6| Mouse DNA sequence from clone RP23-118M14 on chromosome 13, complete sequence Length = 221250 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 ggaggagaggttgttgatgc 429 |||||||||||||||||||| Sbjct: 10080 ggaggagaggttgttgatgc 10099
>gb|AC092117.4| Homo sapiens chromosome 16 clone CTD-2270P14, complete sequence Length = 211606 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 gagctgaaggagatgatggaagag 148 |||||| ||||||||||||||||| Sbjct: 147649 gagctggaggagatgatggaagag 147672
>emb|CT009494.4| Mouse DNA sequence from clone RP23-125D7 on chromosome 13, complete sequence Length = 206416 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 gaaggagatgatggaagagg 149 |||||||||||||||||||| Sbjct: 109807 gaaggagatgatggaagagg 109826
>gb|AC132333.3| Mus musculus BAC clone RP24-226I7 from chromosome 7, complete sequence Length = 170540 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 ccaggatgaggagctgaagg 134 |||||||||||||||||||| Sbjct: 135043 ccaggatgaggagctgaagg 135024
>gb|AC117237.2| Mus musculus BAC clone RP23-431G18 from 13, complete sequence Length = 200110 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 gaaggagatgatggaagagg 149 |||||||||||||||||||| Sbjct: 37345 gaaggagatgatggaagagg 37364
>gb|AC142338.1| Pan troglodytes BAC clone RP43-41H4 from 7, complete sequence Length = 186208 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gaagttaatgccatcagcaa 258 |||||||||||||||||||| Sbjct: 67124 gaagttaatgccatcagcaa 67105
>gb|BC020639.1| Homo sapiens serine/arginine repetitive matrix 2, mRNA (cDNA clone IMAGE:4733822), containing frame-shift errors Length = 829 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 gagctgaaggagatgatggaagag 148 |||||| ||||||||||||||||| Sbjct: 454 gagctggaggagatgatggaagag 477
>gb|BC046104.1| Homo sapiens serine/arginine repetitive matrix 2, mRNA (cDNA clone IMAGE:6203679), containing frame-shift errors Length = 787 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 gagctgaaggagatgatggaagag 148 |||||| ||||||||||||||||| Sbjct: 419 gagctggaggagatgatggaagag 442
>emb|AL445228.13| Human DNA sequence from clone RP11-382D12 on chromosome 1 Contains a novel gene, the 5' end of the C1orf21 gene for chromosome 1 open reading frame 21 and a CpG island, complete sequence Length = 116252 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 ttctgagatgaaccaggagc 296 |||||||||||||||||||| Sbjct: 19333 ttctgagatgaaccaggagc 19314
>emb|AL135923.15| Human DNA sequence from clone RP11-29B9 on chromosome 9p23-24.3 Contains two novel genes, complete sequence Length = 152470 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tgccacatcttcggcaatta 320 |||||||||||||||||||| Sbjct: 24540 tgccacatcttcggcaatta 24559
>emb|AL121782.9|HSJ585I14 Human DNA sequence from clone RP4-585I14 on chromosome 20 Contains the 3' end of the C20orf13 gene for chromosome 20 open reading frame 13 and the GAPDP2 gene for glyceraldehyde-3-phosphate dehydrogenase pseudogene 2, complete sequence Length = 144781 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 gagctgaaggagatgatggaagag 148 |||||||||||||||| ||||||| Sbjct: 28353 gagctgaaggagatgagggaagag 28376
>gb|AY270935.1| Homo sapiens clone SKT07-E8 putative promoter sequence Length = 458 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 gagctgaaggagatgatggaagag 148 |||||| ||||||||||||||||| Sbjct: 210 gagctggaggagatgatggaagag 233
>gb|BC070050.1| Homo sapiens serine/arginine repetitive matrix 2, mRNA (cDNA clone IMAGE:30340453), partial cds Length = 3327 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 gagctgaaggagatgatggaagag 148 |||||| ||||||||||||||||| Sbjct: 474 gagctggaggagatgatggaagag 497
>gb|BC029515.1| Homo sapiens centrin, EF-hand protein, 1, mRNA (cDNA clone MGC:33791 IMAGE:5297994), complete cds Length = 1285 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 ggatgaggagctgaaggagatgat 141 ||||||||||||| |||||||||| Sbjct: 466 ggatgaggagctgcaggagatgat 489
>emb|AJ309022.1|GFL309022 Grapevine fleck virus complete genome, isolate MT48, genomic RNA Length = 7564 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 attgcggaggagggaggaga 417 |||||||||||||||||||| Sbjct: 6420 attgcggaggagggaggaga 6401
>gb|AC068012.12| Homo sapiens chromosome , clone RP11-71B13, complete sequence Length = 2559 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 608 gttgcaggtccaggaagtgg 627 |||||||||||||||||||| Sbjct: 412 gttgcaggtccaggaagtgg 431
>emb|CR858352.1| Pongo pygmaeus mRNA; cDNA DKFZp459N2026 (from clone DKFZp459N2026) Length = 3040 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 tgaggagctgaaggagatgatgga 144 |||||||| ||||||||||||||| Sbjct: 2245 tgaggagcagaaggagatgatgga 2268
>emb|CR749507.1| Homo sapiens mRNA; cDNA DKFZp686B0331 (from clone DKFZp686B0331) Length = 4877 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 gagctgaaggagatgatggaagag 148 |||||||||||||||| ||||||| Sbjct: 1687 gagctgaaggagatgagggaagag 1664
>emb|CR621486.1| full-length cDNA clone CS0DD005YE16 of Neuroblastoma Cot 50-normalized of Homo sapiens (human) Length = 1439 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 gagctgaaggagatgatggaagag 148 |||||| ||||||||||||||||| Sbjct: 387 gagctggaggagatgatggaagag 410
>emb|CR601265.1| full-length cDNA clone CS0DI076YI13 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 692 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 ggatgaggagctgaaggagatgat 141 ||||||||||||| |||||||||| Sbjct: 421 ggatgaggagctgcaggagatgat 444
>gb|AE011667.1| Xanthomonas axonopodis pv. citri str. 306, section 45 of 469 of the complete genome Length = 11789 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tgatgctcagcctgctgcca 110 |||||||||||||||||||| Sbjct: 127 tgatgctcagcctgctgcca 146
>emb|CR590315.1| full-length cDNA clone CS0DI076YG15 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 692 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 ggatgaggagctgaaggagatgat 141 ||||||||||||| |||||||||| Sbjct: 421 ggatgaggagctgcaggagatgat 444
>gb|AC024086.5| Homo sapiens chromosome 7 clone RP11-242F21, complete sequence Length = 153232 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gaagttaatgccatcagcaa 258 |||||||||||||||||||| Sbjct: 48037 gaagttaatgccatcagcaa 48018
>gb|AC104236.2| Homo sapiens chromosome 15, clone RP11-24J19, complete sequence Length = 160392 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 608 gttgcaggtccaggaagtgg 627 |||||||||||||||||||| Sbjct: 98342 gttgcaggtccaggaagtgg 98361
>dbj|AB179195.1| Macaca fascicularis testis cDNA clone: QtsA-14639, similar to human centrin, EF-hand protein, 1 (CETN1), mRNA, RefSeq: NM_004066.1 Length = 1770 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 ggatgaggagctgaaggagatgat 141 ||||||||||||| |||||||||| Sbjct: 431 ggatgaggagctgcaggagatgat 454
>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III, complete sequence Length = 907057 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cattctggaaggaggcatat 73 |||||||||||||||||||| Sbjct: 55764 cattctggaaggaggcatat 55783
>gb|AC158536.2| Mus musculus BAC clone RP23-29L19 from chromosome 13, complete sequence Length = 199663 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 ggaggagaggttgttgatgc 429 |||||||||||||||||||| Sbjct: 137284 ggaggagaggttgttgatgc 137303
>dbj|AK002366.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610009B14 product:hypothetical protein, full insert sequence Length = 943 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 gcttggtgctgtcctgtggt 172 |||||||||||||||||||| Sbjct: 520 gcttggtgctgtcctgtggt 501
>gb|AC022486.4|AC022486 Homo sapiens BAC clone RP11-569J3 from Y, complete sequence Length = 156357 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 agaggttgttgatgcattct 434 |||||||||||||||||||| Sbjct: 137352 agaggttgttgatgcattct 137371
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 cagtgcggaacgcttgatgatgca 55 |||||||| ||||||||||||||| Sbjct: 14969703 cagtgcggtacgcttgatgatgca 14969680
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 tgcggaggagggaggagagg 419 |||||||||||||||||||| Sbjct: 24387416 tgcggaggagggaggagagg 24387435
>dbj|AB002322.3| Homo sapiens mRNA for KIAA0324 protein, partial cds Length = 9003 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 gagctgaaggagatgatggaagag 148 |||||| ||||||||||||||||| Sbjct: 415 gagctggaggagatgatggaagag 438
>gb|AC069257.28| Homo sapiens 3 BAC RP11-447L10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 188969 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 ggagatgatggaagaggaaa 152 |||||||||||||||||||| Sbjct: 183039 ggagatgatggaagaggaaa 183058
>gb|AC118019.11| Mus musculus chromosome 8, clone RP23-458N4, complete sequence Length = 185749 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 aggagatgatggaagaggaa 151 |||||||||||||||||||| Sbjct: 176034 aggagatgatggaagaggaa 176053
>gb|AC093517.3| Homo sapiens chromosome 16 clone CTD-2593F12, complete sequence Length = 160606 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 gagctgaaggagatgatggaagag 148 |||||| ||||||||||||||||| Sbjct: 141069 gagctggaggagatgatggaagag 141092
>gb|AC019102.13| Homo sapiens BAC clone RP11-457A20 from 2, complete sequence Length = 158242 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 ggaggagggaggagaggttg 422 |||||||||||||||||||| Sbjct: 40450 ggaggagggaggagaggttg 40431
>gb|AY151077.1| Sphaerospira rockhamptonensis isolate SAR3 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 414 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 533 tatgagtatttgcactccctaaat 556 ||||||||||||||||| |||||| Sbjct: 187 tatgagtatttgcactcactaaat 164
>gb|AF242432.1|AF242431S2 Mus musculus Naip3 gene, exon 1; neuronal apoptosis inhibitory protein 1 (Naip1) and general transcription factor IIH polypeptide 2 (Gtf2h2) genes, complete cds Length = 90650 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 ggaggagaggttgttgatgc 429 |||||||||||||||||||| Sbjct: 17088 ggaggagaggttgttgatgc 17069
>gb|AC078815.22| Homo sapiens 12q BAC RP11-766N7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163475 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 ggagctgaaggagatgatggaaga 147 ||||||||||||||||| |||||| Sbjct: 153829 ggagctgaaggagatgagggaaga 153852
>ref|XM_220207.3| PREDICTED: Rattus norvegicus serine/arginine repetitive matrix 2 (predicted) (Srrm2_predicted), mRNA Length = 5671 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 gagctgaaggagatgatggaagag 148 |||||| ||||||||||||||||| Sbjct: 667 gagctggaggagatgatggaagag 690
>gb|AC009358.6|AC009358 Human Chromosome 7 clone RP11-191E5, complete sequence Length = 185124 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gaagttaatgccatcagcaa 258 |||||||||||||||||||| Sbjct: 44445 gaagttaatgccatcagcaa 44426
>gb|AF201422.1|AF201422 Homo sapiens splicing coactivator subunit SRm300 (SRM300) mRNA, complete cds Length = 7789 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 gagctgaaggagatgatggaagag 148 |||||| ||||||||||||||||| Sbjct: 443 gagctggaggagatgatggaagag 466
>dbj|AP005429.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0701F11 Length = 154950 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 cagtgcggaacgcttgatgatgca 55 |||||||| ||||||||||||||| Sbjct: 39149 cagtgcggtacgcttgatgatgca 39126
>emb|AL691421.9| Mouse DNA sequence from clone RP23-21A16 on chromosome X, complete sequence Length = 221461 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 60 ggaaggaggcatatgacatctttgagga 87 ||||| ||||||||||||||| |||||| Sbjct: 152284 ggaagcaggcatatgacatctgtgagga 152257
>emb|BX647088.1|HSM807232 Homo sapiens mRNA; cDNA DKFZp686O15166 (from clone DKFZp686O15166) Length = 5322 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 gagctgaaggagatgatggaagag 148 |||||| ||||||||||||||||| Sbjct: 309 gagctggaggagatgatggaagag 332
>ref|NG_004636.1| Homo sapiens chromosome Y palindromes P4 and P5 (P4-P5@) on chromosome Y Length = 1351786 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 agaggttgttgatgcattct 434 |||||||||||||||||||| Sbjct: 1134196 agaggttgttgatgcattct 1134215
>ref|NM_208583.1| Eremothecium gossypii ACL174Wp (ACL174W), mRNA Length = 1956 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cattctggaaggaggcatat 73 |||||||||||||||||||| Sbjct: 929 cattctggaaggaggcatat 948
>gb|U03270.1|HSU03270 Homo sapiens centrin mRNA, complete cds Length = 1161 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 ggatgaggagctgaaggagatgat 141 ||||||||||||| |||||||||| Sbjct: 456 ggatgaggagctgcaggagatgat 479
>dbj|AP005597.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-72M10, complete sequence Length = 163324 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 aattaaccaggatgagatagagga 339 ||||||||||||| |||||||||| Sbjct: 133256 aattaaccaggataagatagagga 133233
>dbj|AB016089.1| Homo sapiens mRNA for RNA binding protein, partial cds, clone: R52 Length = 944 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 gagctgaaggagatgatggaagag 148 |||||| ||||||||||||||||| Sbjct: 399 gagctggaggagatgatggaagag 422
>dbj|AB016092.1| Homo sapiens mRNA for RNA binding protein, complete cds Length = 9027 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 gagctgaaggagatgatggaagag 148 |||||| ||||||||||||||||| Sbjct: 439 gagctggaggagatgatggaagag 462
>dbj|AP001178.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-806L2, complete sequence Length = 152711 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 ggatgaggagctgaaggagatgat 141 ||||||||||||| |||||||||| Sbjct: 8508 ggatgaggagctgcaggagatgat 8531 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,522,042 Number of Sequences: 3902068 Number of extensions: 6522042 Number of successful extensions: 146005 Number of sequences better than 10.0: 89 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 145662 Number of HSP's gapped (non-prelim): 343 length of query: 634 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 611 effective length of database: 17,143,297,704 effective search space: 10474554897144 effective search space used: 10474554897144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
