>RDRP_TCV (P17460) Probable RNA-directed RNA polymerase (EC 2.7.7.48)|
           (Protein p88) [Contains: Protein p28]
          Length = 775

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
 Frame = +3

Query: 213 IAGLKRKQVGMCKTCHKPTHIQK--SMENSKKAGIWQVVVDIRILQQLRRLDSEVHVVIQ 386
           ++G++R+ V +    H P   +K  S    ++A I+Q  +D+ +  +L R D+E+   ++
Sbjct: 340 LSGIRRRLVRLAGN-HTPVPREKYPSFYKGRRATIYQKALDLYMTCRLSRKDAELKTFVK 398

Query: 387 REKL*YT 407
            EK+ +T
Sbjct: 399 AEKINFT 405

>Y300_BUCBP (Q89AI6) Hypothetical UPF0053 protein bbp_300|
          Length = 519

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 273 IQKSMENSKKAGIWQVVVDIRILQQLRRLDSEVHVV 380
           IQK+  N   AG W +V+ I IL  +  LD+ +  V
Sbjct: 113 IQKNENNKHYAGFWTIVIQIVILDSIFSLDAIITAV 148

>CAK1_YEAST (P43568) Serine/threonine-protein kinase CAK1 (EC 2.7.11.22)|
           (CDK-activating kinase)
          Length = 368

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 4/145 (2%)
 Frame = -1

Query: 470 LLSLFEFTRLSPPDFTMIYSKCVSQLLSLNNYMNFTVQSSQLL*DPNINNYLPNTSLFGI 291
           LL LF F  ++  +F  ++ K        N Y +    S  ++ DP +  Y     +   
Sbjct: 75  LLLLFPFEEMNLYEFMQMHYK--RDRRKKNPYYDLLNPSIPIVADPPVQKYTNQLDVNRY 132

Query: 290 FHGFLYMGWLVTSFTHPNLL---PL*SSNVAMLQNSGS-QPLITNAQKMLNYSLANNSCS 123
              F        +F H N +    +   N+ +  N+ +  P +      ++Y +ANNS +
Sbjct: 133 SLSFFRQMVEGIAFLHENKIIHRDIKPQNIMLTNNTSTVSPKLYIIDFGISYDMANNSQT 192

Query: 122 DTCQQNNGITDLTTHFTKIQSPQVM 48
                ++ +TD++T   K  +P+V+
Sbjct: 193 SAEPMDSKVTDISTGIYK--APEVL 215

>HD_RAT (P51111) Huntingtin (Huntington disease protein homolog) (HD protein)|
          Length = 3110

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
 Frame = -3

Query: 441  VTSRFYNDIFKMCITTSLSE*LHELHCPIFSAA-------VRSEYQQLPAKYQPFWNF 289
            ++S F   +F  C++  +SE       P+F AA       V +  QQLPA +Q F  F
Sbjct: 2106 MSSEFNLSLFAPCLSLGMSEIAGSQKSPLFEAARRVTLDRVTNVVQQLPAVHQVFQPF 2163

>HD_MOUSE (P42859) Huntingtin (Huntington disease protein homolog) (HD protein)|
          Length = 3119

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
 Frame = -3

Query: 441  VTSRFYNDIFKMCITTSLSE*LHELHCPIFSAA-------VRSEYQQLPAKYQPFWNF 289
            ++S F   +   C++  +SE  +    P+F AA       V S  QQLPA +Q F  F
Sbjct: 2115 MSSEFNLSLLAPCLSLGMSEIANGQKSPLFEAARGVILNRVTSVVQQLPAVHQVFQPF 2172

>COS12_YEAST (P53053) Protein COS12|
          Length = 380

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -3

Query: 306 QPFWNFPWIFVYGLACDKF---YTSQPASS 226
           Q  WN P +F  G+ C+KF   Y S P SS
Sbjct: 324 QKIWNSPILFSDGIDCEKFFKWYFSTPVSS 353


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,159,379
Number of Sequences: 219361
Number of extensions: 1340332
Number of successful extensions: 3448
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3447
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)