Clone Name | bah63i19 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_463952.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1802 Score = 841 bits (424), Expect = 0.0 Identities = 637/708 (89%) Strand = Plus / Plus Query: 20 tccaccgggtcggtgaagagcccgatgacgacgacggagaagatcctggcgcgggcgtcg 79 ||||| || |||||||||||| | ||||||| ||| ||||||||||||||| |||||||| Sbjct: 243 tccactggctcggtgaagagcgccatgacgatgacagagaagatcctggcgagggcgtcg 302 Query: 80 gagcgcgcgagcctcgagcccggggagaacgtgtgggtggacgtggacgtgctcatgacg 139 |||||||| ||| | ||||||||||||||||||||||||||||| |||||||| |||||| Sbjct: 303 gagcgcgccagcttggagcccggggagaacgtgtgggtggacgtcgacgtgctgatgacg 362 Query: 140 cacgacgtctgcggccccggcaccatcgggatcttcaagcaggagttcggggaggacgcc 199 ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct: 363 cacgacgtctgcggccctggcaccatcgggatcttcaagcgggagttcggggaggacgcc 422 Query: 200 aaggtgtgggaccgcgagaaggtcgtcatcatccccgaccactacatcttcaccgccgac 259 ||||| |||||||| |||||||| ||||||||||| |||||||||||||||||| ||| Sbjct: 423 aaggtttgggaccgagagaaggtggtcatcatcccggaccactacatcttcaccagcgat 482 Query: 260 gagcgggccaaccggaacgtcgacatcctcagggacttctgccaggagcagaagatcaag 319 ||||| || ||||| || || || ||||||||||| ||||| ||||||||| |||||| Sbjct: 483 gagcgagcaaaccgaaatgttgatatcctcagggatttctgtatggagcagaacatcaag 542 Query: 320 tacttttacgacatcaaggacctcagcgacttcagagcaaatccggactacaaaggtgtt 379 ||||| || |||||||||||||| ||| | |||| ||||||||| |||||||| |||||| Sbjct: 543 tacttctatgacatcaaggacctgagcaatttcaaagcaaatccagactacaagggtgtt 602 Query: 380 tgccacattgcgctcgcacaagaaggtcactgccgaccgggcgaggttctccttggtact 439 |||||| |||| || || ||||| ||||| ||| |||| ||||||||||||||||||||| Sbjct: 603 tgccacgttgctcttgctcaagagggtcattgcagaccaggcgaggttctccttggtact 662 Query: 440 gattcgcatacctgcaatgctggagcctttggtcagtttgcaactggaatcggaaacact 499 ||||| ||||| |||||||||||||||||||| || |||||||||||||| ||||||||| Sbjct: 663 gattctcatacatgcaatgctggagcctttggccaatttgcaactggaattggaaacact 722 Query: 500 gatgctggttttgtgatgggaactggaaaggctcttctcaaggtgcccccaaccatcagg 559 |||||||||||||||||||| ||||| ||||||||||| |||||||| ||||| |||||| Sbjct: 723 gatgctggttttgtgatgggcactgggaaggctcttcttaaggtgcctccaactatcagg 782 Query: 560 ttcgtattagatggagaaatgccaccttatttacttgctaaggatctgattttacaaatt 619 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 783 tttgtattagatggagaaatgccaccttatttacttgcaaaggatctgattttacaaatt 842 Query: 620 attggcgagatatctgtatctggtgctacatacagatcgatggagtttgttggatcaaca 679 ||||| ||||| ||||||||||| || ||||||| ||| |||||||||||||||||||| Sbjct: 843 attggtgagatttctgtatctggcgcaacatacaaatccatggagtttgttggatcaact 902 Query: 680 atagaaagtctaactatggaagaacgaatgacactgtgcaacatggtt 727 | |||||||||| ||||||||| |||||||||||||||||||||||| Sbjct: 903 gtggaaagtctaaatatggaagagcgaatgacactgtgcaacatggtt 950
>dbj|AK101889.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070M16, full insert sequence Length = 1802 Score = 841 bits (424), Expect = 0.0 Identities = 637/708 (89%) Strand = Plus / Plus Query: 20 tccaccgggtcggtgaagagcccgatgacgacgacggagaagatcctggcgcgggcgtcg 79 ||||| || |||||||||||| | ||||||| ||| ||||||||||||||| |||||||| Sbjct: 243 tccactggctcggtgaagagcgccatgacgatgacagagaagatcctggcgagggcgtcg 302 Query: 80 gagcgcgcgagcctcgagcccggggagaacgtgtgggtggacgtggacgtgctcatgacg 139 |||||||| ||| | ||||||||||||||||||||||||||||| |||||||| |||||| Sbjct: 303 gagcgcgccagcttggagcccggggagaacgtgtgggtggacgtcgacgtgctgatgacg 362 Query: 140 cacgacgtctgcggccccggcaccatcgggatcttcaagcaggagttcggggaggacgcc 199 ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct: 363 cacgacgtctgcggccctggcaccatcgggatcttcaagcgggagttcggggaggacgcc 422 Query: 200 aaggtgtgggaccgcgagaaggtcgtcatcatccccgaccactacatcttcaccgccgac 259 ||||| |||||||| |||||||| ||||||||||| |||||||||||||||||| ||| Sbjct: 423 aaggtttgggaccgagagaaggtggtcatcatcccggaccactacatcttcaccagcgat 482 Query: 260 gagcgggccaaccggaacgtcgacatcctcagggacttctgccaggagcagaagatcaag 319 ||||| || ||||| || || || ||||||||||| ||||| ||||||||| |||||| Sbjct: 483 gagcgagcaaaccgaaatgttgatatcctcagggatttctgtatggagcagaacatcaag 542 Query: 320 tacttttacgacatcaaggacctcagcgacttcagagcaaatccggactacaaaggtgtt 379 ||||| || |||||||||||||| ||| | |||| ||||||||| |||||||| |||||| Sbjct: 543 tacttctatgacatcaaggacctgagcaatttcaaagcaaatccagactacaagggtgtt 602 Query: 380 tgccacattgcgctcgcacaagaaggtcactgccgaccgggcgaggttctccttggtact 439 |||||| |||| || || ||||| ||||| ||| |||| ||||||||||||||||||||| Sbjct: 603 tgccacgttgctcttgctcaagagggtcattgcagaccaggcgaggttctccttggtact 662 Query: 440 gattcgcatacctgcaatgctggagcctttggtcagtttgcaactggaatcggaaacact 499 ||||| ||||| |||||||||||||||||||| || |||||||||||||| ||||||||| Sbjct: 663 gattctcatacatgcaatgctggagcctttggccaatttgcaactggaattggaaacact 722 Query: 500 gatgctggttttgtgatgggaactggaaaggctcttctcaaggtgcccccaaccatcagg 559 |||||||||||||||||||| ||||| ||||||||||| |||||||| ||||| |||||| Sbjct: 723 gatgctggttttgtgatgggcactgggaaggctcttcttaaggtgcctccaactatcagg 782 Query: 560 ttcgtattagatggagaaatgccaccttatttacttgctaaggatctgattttacaaatt 619 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 783 tttgtattagatggagaaatgccaccttatttacttgcaaaggatctgattttacaaatt 842 Query: 620 attggcgagatatctgtatctggtgctacatacagatcgatggagtttgttggatcaaca 679 ||||| ||||| ||||||||||| || ||||||| ||| |||||||||||||||||||| Sbjct: 843 attggtgagatttctgtatctggcgcaacatacaaatccatggagtttgttggatcaact 902 Query: 680 atagaaagtctaactatggaagaacgaatgacactgtgcaacatggtt 727 | |||||||||| ||||||||| |||||||||||||||||||||||| Sbjct: 903 gtggaaagtctaaatatggaagagcgaatgacactgtgcaacatggtt 950
>gb|AY108671.1| Zea mays PCO109373 mRNA sequence Length = 1642 Score = 811 bits (409), Expect = 0.0 Identities = 577/633 (91%) Strand = Plus / Plus Query: 95 gagcccggggagaacgtgtgggtggacgtggacgtgctcatgacgcacgacgtctgcggc 154 ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct: 7 gagcccggggagaacgtgtgggtggacatcgacgtgctcatgacgcacgacgtctgcggg 66 Query: 155 cccggcaccatcgggatcttcaagcaggagttcggggaggacgccaaggtgtgggaccgc 214 |||||||||||||| ||||||||| |||||||||||||||| |||||||| ||||||||| Sbjct: 67 cccggcaccatcggcatcttcaagaaggagttcggggaggatgccaaggtctgggaccgc 126 Query: 215 gagaaggtcgtcatcatccccgaccactacatcttcaccgccgacgagcgggccaaccgg 274 ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct: 127 gagaaggtcgtcatcatccccgaccactacatcttcaccagcgacgagcgcgccaaccgc 186 Query: 275 aacgtcgacatcctcagggacttctgccaggagcagaagatcaagtacttttacgacatc 334 |||||||| ||||||||||||||||| | ||||||||| ||||||||||| || || ||| Sbjct: 187 aacgtcgatatcctcagggacttctgtctggagcagaacatcaagtacttctatgatatc 246 Query: 335 aaggacctcagcgacttcagagcaaatccggactacaaaggtgtttgccacattgcgctc 394 |||||||||||||| ||||| || ||||| |||||||| ||||| ||||||||||| || Sbjct: 247 aaggacctcagcgatttcagggctaatccagactacaagggtgtctgccacattgcactt 306 Query: 395 gcacaagaaggtcactgccgaccgggcgaggttctccttggtactgattcgcatacctgc 454 || || ||||| ||||||||||| |||||||||||||| ||||||||||| ||||| ||| Sbjct: 307 gctcaggaaggccactgccgaccaggcgaggttctcctgggtactgattctcatacgtgc 366 Query: 455 aatgctggagcctttggtcagtttgcaactggaatcggaaacactgatgctggttttgtg 514 |||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||| Sbjct: 367 aatgctggagcctttggtcaatttgcaaccggaattggaaacactgatgcaggttttgtg 426 Query: 515 atgggaactggaaaggctcttctcaaggtgcccccaaccatcaggttcgtattagatgga 574 ||||| |||||||||||||||||||||||||| || || |||||||| |||||||||||| Sbjct: 427 atgggcactggaaaggctcttctcaaggtgccacctactatcaggtttgtattagatgga 486 Query: 575 gaaatgccaccttatttacttgctaaggatctgattttacaaattattggcgagatatct 634 |||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||| || Sbjct: 487 gaaatgccgccttatttacttgcgaaggatctgattttgcaaattattggtgagatttca 546 Query: 635 gtatctggtgctacatacagatcgatggagtttgttggatcaacaatagaaagtctaact 694 ||||||||||| || |||| |||||||||||||||||||||||| ||||||||||||| Sbjct: 547 gtatctggtgcaacctacaaatcgatggagtttgttggatcaactgtagaaagtctaacc 606 Query: 695 atggaagaacgaatgacactgtgcaacatggtt 727 ||||||||||| |||||||| |||||||||||| Sbjct: 607 atggaagaacgtatgacactatgcaacatggtt 639
>gb|BT024115.1| Zea mays clone EL01N0513A07 mRNA sequence Length = 1781 Score = 797 bits (402), Expect = 0.0 Identities = 633/710 (89%) Strand = Plus / Plus Query: 18 cgtccaccgggtcggtgaagagcccgatgacgacgacggagaagatcctggcgcgggcgt 77 |||||||||| |||||||||||| ||||||||| |||||||||||| ||||||||||||| Sbjct: 289 cgtccaccggctcggtgaagagcgcgatgacgatgacggagaagatactggcgcgggcgt 348 Query: 78 cggagcgcgcgagcctcgagcccggggagaacgtgtgggtggacgtggacgtgctcatga 137 ||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||| Sbjct: 349 cggagcgcgcggcgctggagcccggggagaacgtgtgggtcgacgtcgacgtgctcatga 408 Query: 138 cgcacgacgtctgcggccccggcaccatcgggatcttcaagcaggagttcggggaggacg 197 |||||||||||||||| |||||| || ||| ||||||||| |||||||||||||||||| Sbjct: 409 cgcacgacgtctgcgggcccggcgccttcgacatcttcaagaaggagttcggggaggacg 468 Query: 198 ccaaggtgtgggaccgcgagaaggtcgtcatcatccccgaccactacatcttcaccgccg 257 ||| ||| ||||||||||||||| ||||| ||||||| |||||||||||||||||| || Sbjct: 469 ccagggtctgggaccgcgagaagctcgtcgtcatcccggaccactacatcttcaccagcg 528 Query: 258 acgagcgggccaaccggaacgtcgacatcctcagggacttctgccaggagcagaagatca 317 ||| || ||||| || |||||||||||||||||||||||||| ||||||||| |||| Sbjct: 529 acggccgtgccaaacgcaacgtcgacatcctcagggacttctgtgcggagcagaacatca 588 Query: 318 agtacttttacgacatcaaggacctcagcgacttcagagcaaatccggactacaaaggtg 377 ||||||| || |||||||||||||||||||| ||||| || ||||||||||||||||| | Sbjct: 589 agtacttctatgacatcaaggacctcagcgatttcagggctaatccggactacaaaggcg 648 Query: 378 tttgccacattgcgctcgcacaagaaggtcactgccgaccgggcgaggttctccttggta 437 | |||||||| || || || || ||||| ||||||||||| |||||||||||| | || | Sbjct: 649 tctgccacatcgcacttgctcaggaaggacactgccgaccaggcgaggttctcttgggca 708 Query: 438 ctgattcgcatacctgcaatgctggagcctttggtcagtttgcaactggaatcggaaaca 497 ||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 709 ctgattctcatacatgcaatgctggagcttttggtcagtttgcaactggaatcggaaaca 768 Query: 498 ctgatgctggttttgtgatgggaactggaaaggctcttctcaaggtgcccccaaccatca 557 ||||||| ||||||||| |||| |||||||||||||||||||||||||| || || |||| Sbjct: 769 ctgatgcaggttttgtgttgggcactggaaaggctcttctcaaggtgccacctactatca 828 Query: 558 ggttcgtattagatggagaaatgccaccttatttacttgctaaggatctgattttacaaa 617 |||| ||||||||||||| ||||| |||||||||||||| |||||||||||||| |||| Sbjct: 829 ggtttatattagatggagagatgccgccttatttacttgcgaaggatctgattttgcaaa 888 Query: 618 ttattggcgagatatctgtatctggtgctacatacagatcgatggagtttgttggatcaa 677 ||||||| ||||| || ||||||||||| || |||| ||| ||||||||||||||||||| Sbjct: 889 ttattggagagatttcagtatctggtgcgacctacaaatcaatggagtttgttggatcaa 948 Query: 678 caatagaaagtctaactatggaagaacgaatgacactgtgcaacatggtt 727 | ||||||||||||| |||||||| || |||||||| |||||||||||| Sbjct: 949 ctgtagaaagtctaaccatggaagagcgtatgacactatgcaacatggtt 998
>gb|AY106414.1| Zea mays PCO109372 mRNA sequence Length = 1863 Score = 789 bits (398), Expect = 0.0 Identities = 632/710 (89%) Strand = Plus / Plus Query: 18 cgtccaccgggtcggtgaagagcccgatgacgacgacggagaagatcctggcgcgggcgt 77 |||||||||| |||||||||||| ||||||||| |||||||||||| ||||||||||||| Sbjct: 238 cgtccaccggctcggtgaagagcgcgatgacgatgacggagaagatactggcgcgggcgt 297 Query: 78 cggagcgcgcgagcctcgagcccggggagaacgtgtgggtggacgtggacgtgctcatga 137 ||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||| Sbjct: 298 cggagcgcgcggcgctggagcccggggagaacgtgtgggtcgacgtcgacgtgctcatga 357 Query: 138 cgcacgacgtctgcggccccggcaccatcgggatcttcaagcaggagttcggggaggacg 197 |||||||||||||||| |||||| || ||| ||||||||| |||||||||||||||||| Sbjct: 358 cgcacgacgtctgcgggcccggcgccttcgacatcttcaagaaggagttcggggaggacg 417 Query: 198 ccaaggtgtgggaccgcgagaaggtcgtcatcatccccgaccactacatcttcaccgccg 257 ||| ||| ||||||||||||||| ||||| ||||||| |||||||||||||||||| || Sbjct: 418 ccagggtctgggaccgcgagaagctcgtcgtcatcccggaccactacatcttcaccagcg 477 Query: 258 acgagcgggccaaccggaacgtcgacatcctcagggacttctgccaggagcagaagatca 317 ||| || ||||| || |||||||||||||||||||||||||| ||||||||| |||| Sbjct: 478 acggccgtgccaaacgcaacgtcgacatcctcagggacttctgtgcggagcagaacatca 537 Query: 318 agtacttttacgacatcaaggacctcagcgacttcagagcaaatccggactacaaaggtg 377 ||||||| || |||||||||||||||||||| ||||| || ||||||||||||||||| | Sbjct: 538 agtacttctatgacatcaaggacctcagcgatttcagggctaatccggactacaaaggcg 597 Query: 378 tttgccacattgcgctcgcacaagaaggtcactgccgaccgggcgaggttctccttggta 437 | |||||||| || || || || |||| ||||||||||| |||||||||||| | || | Sbjct: 598 tctgccacatcgcacttgctcaggaagcccactgccgaccaggcgaggttctcttgggca 657 Query: 438 ctgattcgcatacctgcaatgctggagcctttggtcagtttgcaactggaatcggaaaca 497 ||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 658 ctgattctcatacatgcaatgctggagcttttggtcagtttgcaactggaatcggaaaca 717 Query: 498 ctgatgctggttttgtgatgggaactggaaaggctcttctcaaggtgcccccaaccatca 557 ||||||| ||||||||| |||| |||||||||||||||||||||||||| || || |||| Sbjct: 718 ctgatgcaggttttgtgttgggcactggaaaggctcttctcaaggtgccacctactatca 777 Query: 558 ggttcgtattagatggagaaatgccaccttatttacttgctaaggatctgattttacaaa 617 |||| ||||||||||||| ||||| |||||||||||||| |||||||||||||| |||| Sbjct: 778 ggtttatattagatggagagatgccgccttatttacttgcgaaggatctgattttgcaaa 837 Query: 618 ttattggcgagatatctgtatctggtgctacatacagatcgatggagtttgttggatcaa 677 ||||||| ||||| || ||||||||||| || |||| ||| ||||||||||||||||||| Sbjct: 838 ttattggagagatttcagtatctggtgcgacctacaaatcaatggagtttgttggatcaa 897 Query: 678 caatagaaagtctaactatggaagaacgaatgacactgtgcaacatggtt 727 | ||||||||||||| |||||||| || |||||||| |||||||||||| Sbjct: 898 ctgtagaaagtctaaccatggaagagcgtatgacactatgcaacatggtt 947
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 365 bits (184), Expect = 1e-97 Identities = 280/312 (89%) Strand = Plus / Minus Query: 31 ggtgaagagcccgatgacgacgacggagaagatcctggcgcgggcgtcggagcgcgcgag 90 |||||||||| | ||||||| ||| ||||||||||||||| |||||||||||||||| || Sbjct: 1309359 ggtgaagagcgccatgacgatgacagagaagatcctggcgagggcgtcggagcgcgccag 1309300 Query: 91 cctcgagcccggggagaacgtgtgggtggacgtggacgtgctcatgacgcacgacgtctg 150 | | ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 1309299 cttggagcccggggagaacgtgtgggtggacgtcgacgtgctgatgacgcacgacgtctg 1309240 Query: 151 cggccccggcaccatcgggatcttcaagcaggagttcggggaggacgccaaggtgtggga 210 |||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct: 1309239 cggccctggcaccatcgggatcttcaagcgggagttcggggaggacgccaaggtttggga 1309180 Query: 211 ccgcgagaaggtcgtcatcatccccgaccactacatcttcaccgccgacgagcgggccaa 270 ||| |||||||| ||||||||||| |||||||||||||||||| ||| ||||| || || Sbjct: 1309179 ccgagagaaggtggtcatcatcccggaccactacatcttcaccagcgatgagcgagcaaa 1309120 Query: 271 ccggaacgtcgacatcctcagggacttctgccaggagcagaagatcaagtacttttacga 330 ||| || || || ||||||||||| ||||| ||||||||| ||||||||||| || || Sbjct: 1309119 ccgaaatgttgatatcctcagggatttctgtatggagcagaacatcaagtacttctatga 1309060 Query: 331 catcaaggacct 342 |||||||||||| Sbjct: 1309059 catcaaggacct 1309048 Score = 176 bits (89), Expect = 7e-41 Identities = 113/121 (93%) Strand = Plus / Minus Query: 423 aggttctccttggtactgattcgcatacctgcaatgctggagcctttggtcagtttgcaa 482 |||||||||||||||||||||| ||||| |||||||||||||||||||| || ||||||| Sbjct: 1308766 aggttctccttggtactgattctcatacatgcaatgctggagcctttggccaatttgcaa 1308707 Query: 483 ctggaatcggaaacactgatgctggttttgtgatgggaactggaaaggctcttctcaagg 542 ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||| Sbjct: 1308706 ctggaattggaaacactgatgctggttttgtgatgggcactgggaaggctcttcttaagg 1308647 Query: 543 t 543 | Sbjct: 1308646 t 1308646 Score = 121 bits (61), Expect = 3e-24 Identities = 73/77 (94%) Strand = Plus / Minus Query: 540 aggtgcccccaaccatcaggttcgtattagatggagaaatgccaccttatttacttgcta 599 ||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| | Sbjct: 1308245 aggtgcctccaactatcaggtttgtattagatggagaaatgccaccttatttacttgcaa 1308186 Query: 600 aggatctgattttacaa 616 ||||||||||||||||| Sbjct: 1308185 aggatctgattttacaa 1308169 Score = 79.8 bits (40), Expect = 1e-11 Identities = 67/76 (88%) Strand = Plus / Minus Query: 617 attattggcgagatatctgtatctggtgctacatacagatcgatggagtttgttggatca 676 |||||||| ||||| ||||||||||| || ||||||| ||| |||||||||||||||||| Sbjct: 1308078 attattggtgagatttctgtatctggcgcaacatacaaatccatggagtttgttggatca 1308019 Query: 677 acaatagaaagtctaa 692 || | |||||||||| Sbjct: 1308018 actgtggaaagtctaa 1308003 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 356 gcaaatccggactacaaaggtgtttgccacattgcgctcgcacaagaaggtcactgccga 415 |||||||| |||||||| |||||||||||| |||| || || ||||| ||||| ||| || Sbjct: 1308911 gcaaatccagactacaagggtgtttgccacgttgctcttgctcaagagggtcattgcaga 1308852 Query: 416 ccgggcgaggt 426 || |||||||| Sbjct: 1308851 ccaggcgaggt 1308841 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 695 atggaagaacgaatgacactgtgcaacatggtt 727 |||||||| |||||||||||||||||||||||| Sbjct: 1307917 atggaagagcgaatgacactgtgcaacatggtt 1307885
>dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0575F10 Length = 150462 Score = 365 bits (184), Expect = 1e-97 Identities = 280/312 (89%) Strand = Plus / Minus Query: 31 ggtgaagagcccgatgacgacgacggagaagatcctggcgcgggcgtcggagcgcgcgag 90 |||||||||| | ||||||| ||| ||||||||||||||| |||||||||||||||| || Sbjct: 140450 ggtgaagagcgccatgacgatgacagagaagatcctggcgagggcgtcggagcgcgccag 140391 Query: 91 cctcgagcccggggagaacgtgtgggtggacgtggacgtgctcatgacgcacgacgtctg 150 | | ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 140390 cttggagcccggggagaacgtgtgggtggacgtcgacgtgctgatgacgcacgacgtctg 140331 Query: 151 cggccccggcaccatcgggatcttcaagcaggagttcggggaggacgccaaggtgtggga 210 |||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct: 140330 cggccctggcaccatcgggatcttcaagcgggagttcggggaggacgccaaggtttggga 140271 Query: 211 ccgcgagaaggtcgtcatcatccccgaccactacatcttcaccgccgacgagcgggccaa 270 ||| |||||||| ||||||||||| |||||||||||||||||| ||| ||||| || || Sbjct: 140270 ccgagagaaggtggtcatcatcccggaccactacatcttcaccagcgatgagcgagcaaa 140211 Query: 271 ccggaacgtcgacatcctcagggacttctgccaggagcagaagatcaagtacttttacga 330 ||| || || || ||||||||||| ||||| ||||||||| ||||||||||| || || Sbjct: 140210 ccgaaatgttgatatcctcagggatttctgtatggagcagaacatcaagtacttctatga 140151 Query: 331 catcaaggacct 342 |||||||||||| Sbjct: 140150 catcaaggacct 140139 Score = 176 bits (89), Expect = 7e-41 Identities = 113/121 (93%) Strand = Plus / Minus Query: 423 aggttctccttggtactgattcgcatacctgcaatgctggagcctttggtcagtttgcaa 482 |||||||||||||||||||||| ||||| |||||||||||||||||||| || ||||||| Sbjct: 139857 aggttctccttggtactgattctcatacatgcaatgctggagcctttggccaatttgcaa 139798 Query: 483 ctggaatcggaaacactgatgctggttttgtgatgggaactggaaaggctcttctcaagg 542 ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||| Sbjct: 139797 ctggaattggaaacactgatgctggttttgtgatgggcactgggaaggctcttcttaagg 139738 Query: 543 t 543 | Sbjct: 139737 t 139737 Score = 121 bits (61), Expect = 3e-24 Identities = 73/77 (94%) Strand = Plus / Minus Query: 540 aggtgcccccaaccatcaggttcgtattagatggagaaatgccaccttatttacttgcta 599 ||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| | Sbjct: 139336 aggtgcctccaactatcaggtttgtattagatggagaaatgccaccttatttacttgcaa 139277 Query: 600 aggatctgattttacaa 616 ||||||||||||||||| Sbjct: 139276 aggatctgattttacaa 139260 Score = 79.8 bits (40), Expect = 1e-11 Identities = 67/76 (88%) Strand = Plus / Minus Query: 617 attattggcgagatatctgtatctggtgctacatacagatcgatggagtttgttggatca 676 |||||||| ||||| ||||||||||| || ||||||| ||| |||||||||||||||||| Sbjct: 139169 attattggtgagatttctgtatctggcgcaacatacaaatccatggagtttgttggatca 139110 Query: 677 acaatagaaagtctaa 692 || | |||||||||| Sbjct: 139109 actgtggaaagtctaa 139094 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 356 gcaaatccggactacaaaggtgtttgccacattgcgctcgcacaagaaggtcactgccga 415 |||||||| |||||||| |||||||||||| |||| || || ||||| ||||| ||| || Sbjct: 140002 gcaaatccagactacaagggtgtttgccacgttgctcttgctcaagagggtcattgcaga 139943 Query: 416 ccgggcgaggt 426 || |||||||| Sbjct: 139942 ccaggcgaggt 139932 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 695 atggaagaacgaatgacactgtgcaacatggtt 727 |||||||| |||||||||||||||||||||||| Sbjct: 139008 atggaagagcgaatgacactgtgcaacatggtt 138976
>dbj|AP006754.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0018H03, complete sequence Length = 94450 Score = 365 bits (184), Expect = 1e-97 Identities = 280/312 (89%) Strand = Plus / Minus Query: 31 ggtgaagagcccgatgacgacgacggagaagatcctggcgcgggcgtcggagcgcgcgag 90 |||||||||| | ||||||| ||| ||||||||||||||| |||||||||||||||| || Sbjct: 83388 ggtgaagagcgccatgacgatgacagagaagatcctggcgagggcgtcggagcgcgccag 83329 Query: 91 cctcgagcccggggagaacgtgtgggtggacgtggacgtgctcatgacgcacgacgtctg 150 | | ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 83328 cttggagcccggggagaacgtgtgggtggacgtcgacgtgctgatgacgcacgacgtctg 83269 Query: 151 cggccccggcaccatcgggatcttcaagcaggagttcggggaggacgccaaggtgtggga 210 |||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct: 83268 cggccctggcaccatcgggatcttcaagcgggagttcggggaggacgccaaggtttggga 83209 Query: 211 ccgcgagaaggtcgtcatcatccccgaccactacatcttcaccgccgacgagcgggccaa 270 ||| |||||||| ||||||||||| |||||||||||||||||| ||| ||||| || || Sbjct: 83208 ccgagagaaggtggtcatcatcccggaccactacatcttcaccagcgatgagcgagcaaa 83149 Query: 271 ccggaacgtcgacatcctcagggacttctgccaggagcagaagatcaagtacttttacga 330 ||| || || || ||||||||||| ||||| ||||||||| ||||||||||| || || Sbjct: 83148 ccgaaatgttgatatcctcagggatttctgtatggagcagaacatcaagtacttctatga 83089 Query: 331 catcaaggacct 342 |||||||||||| Sbjct: 83088 catcaaggacct 83077 Score = 176 bits (89), Expect = 7e-41 Identities = 113/121 (93%) Strand = Plus / Minus Query: 423 aggttctccttggtactgattcgcatacctgcaatgctggagcctttggtcagtttgcaa 482 |||||||||||||||||||||| ||||| |||||||||||||||||||| || ||||||| Sbjct: 82795 aggttctccttggtactgattctcatacatgcaatgctggagcctttggccaatttgcaa 82736 Query: 483 ctggaatcggaaacactgatgctggttttgtgatgggaactggaaaggctcttctcaagg 542 ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||| Sbjct: 82735 ctggaattggaaacactgatgctggttttgtgatgggcactgggaaggctcttcttaagg 82676 Query: 543 t 543 | Sbjct: 82675 t 82675 Score = 121 bits (61), Expect = 3e-24 Identities = 73/77 (94%) Strand = Plus / Minus Query: 540 aggtgcccccaaccatcaggttcgtattagatggagaaatgccaccttatttacttgcta 599 ||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| | Sbjct: 82274 aggtgcctccaactatcaggtttgtattagatggagaaatgccaccttatttacttgcaa 82215 Query: 600 aggatctgattttacaa 616 ||||||||||||||||| Sbjct: 82214 aggatctgattttacaa 82198 Score = 79.8 bits (40), Expect = 1e-11 Identities = 67/76 (88%) Strand = Plus / Minus Query: 617 attattggcgagatatctgtatctggtgctacatacagatcgatggagtttgttggatca 676 |||||||| ||||| ||||||||||| || ||||||| ||| |||||||||||||||||| Sbjct: 82107 attattggtgagatttctgtatctggcgcaacatacaaatccatggagtttgttggatca 82048 Query: 677 acaatagaaagtctaa 692 || | |||||||||| Sbjct: 82047 actgtggaaagtctaa 82032 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 356 gcaaatccggactacaaaggtgtttgccacattgcgctcgcacaagaaggtcactgccga 415 |||||||| |||||||| |||||||||||| |||| || || ||||| ||||| ||| || Sbjct: 82940 gcaaatccagactacaagggtgtttgccacgttgctcttgctcaagagggtcattgcaga 82881 Query: 416 ccgggcgaggt 426 || |||||||| Sbjct: 82880 ccaggcgaggt 82870 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 695 atggaagaacgaatgacactgtgcaacatggtt 727 |||||||| |||||||||||||||||||||||| Sbjct: 81946 atggaagagcgaatgacactgtgcaacatggtt 81914
>ref|NM_117417.2| Arabidopsis thaliana hydro-lyase/ lyase AT4G13430 mRNA, complete cds Length = 1871 Score = 137 bits (69), Expect = 6e-29 Identities = 294/369 (79%) Strand = Plus / Plus Query: 359 aatccggactacaaaggtgtttgccacattgcgctcgcacaagaaggtcactgccgaccg 418 ||||| |||||||||||||||||||| |||| || |||||||||||||| ||| | || Sbjct: 594 aatcctgactacaaaggtgtttgccatgttgcacttgcacaagaaggtcattgcaggcca 653 Query: 419 ggcgaggttctccttggtactgattcgcatacctgcaatgctggagcctttggtcagttt 478 || |||||| | | || || || || || || || | ||||||||| |||||||| ||| Sbjct: 654 ggagaggttttgttaggaacagactcacacacttgtactgctggagcatttggtcaattt 713 Query: 479 gcaactggaatcggaaacactgatgctggttttgtgatgggaactggaaaggctcttctc 538 || || || || |||||||||||||| ||||||||| | || |||||||| || || Sbjct: 714 gctacagggattggaaacactgatgcaggttttgtgttaggcactggaaaaatcctcctt 773 Query: 539 aaggtgcccccaaccatcaggttcgtattagatggagaaatgccaccttatttacttgct 598 ||||| || ||||| || ||||| | || ||||| || ||||| |||||| | || Sbjct: 774 aaggttccaccaacgatgaggtttatcttggatggtgagatgcctagttatttgcaagca 833 Query: 599 aaggatctgattttacaaattattggcgagatatctgtatctggtgctacatacagatcg 658 |||||||||||||||||||||||||| || |||||||| ||||||| || |||| || Sbjct: 834 aaggatctgattttacaaattattggtgaaatatctgttgctggtgcaacttacaagacg 893 Query: 659 atggagtttgttggatcaacaatagaaagtctaactatggaagaacgaatgacactgtgc 718 |||||||| ||| |||| || |||||||| | |||||||||| |||||||| ||||| Sbjct: 894 atggagttcagtggtacaactatcgaaagtctgagtatggaagaaagaatgacattgtgc 953 Query: 719 aacatggtt 727 ||||||||| Sbjct: 954 aacatggtt 962
>gb|DQ448855.1| Theobroma cacao putative 3-isopropylmalate dehydratase large subunit mRNA, partial cds Length = 361 Score = 137 bits (69), Expect = 6e-29 Identities = 255/317 (80%) Strand = Plus / Plus Query: 395 gcacaagaaggtcactgccgaccgggcgaggttctccttggtactgattcgcatacctgc 454 |||||||||||||||||| | || || |||||| | | || || ||||| || |||||| Sbjct: 7 gcacaagaaggtcactgcaggcctggggaggttttgttagggacagattctcacacctgc 66 Query: 455 aatgctggagcctttggtcagtttgcaactggaatcggaaacactgatgctggttttgtg 514 | ||||||||| |||||||| ||||| || ||||| ||||| || ||||| || ||||| Sbjct: 67 actgctggagcatttggtcaatttgctacaggaataggaaatacagatgcaggctttgtc 126 Query: 515 atgggaactggaaaggctcttctcaaggtgcccccaaccatcaggttcgtattagatgga 574 |||| ||||| ||| ||| ||||||||||| || || | || || || | ||||| Sbjct: 127 ttgggcactgggaagcttctactcaaggtgccaccgactttgagatttgtgatggatggt 186 Query: 575 gaaatgccaccttatttacttgctaaggatctgattttacaaattattggcgagatatct 634 |||||||| | ||||| ||||| |||||| |||||||||| || ||||| || |||||| Sbjct: 187 gaaatgcctcactatttgcttgcaaaggatttgattttacagatcattggtgaaatatct 246 Query: 635 gtatctggtgctacatacagatcgatggagtttgttggatcaacaatagaaagtctaact 694 ||| ||||||| ||||||| ||| ||||||||||||||| |||| | |||||| ||| Sbjct: 247 gtagctggtgcaacatacaaatccatggagtttgttggaacaactgttgaaagtttaaac 306 Query: 695 atggaagaacgaatgac 711 ||||||||||| ||||| Sbjct: 307 atggaagaacgtatgac 323
>gb|AY117151.1| Arabidopsis thaliana unknown protein (At4g13430) mRNA, complete cds Length = 1561 Score = 137 bits (69), Expect = 6e-29 Identities = 294/369 (79%) Strand = Plus / Plus Query: 359 aatccggactacaaaggtgtttgccacattgcgctcgcacaagaaggtcactgccgaccg 418 ||||| |||||||||||||||||||| |||| || |||||||||||||| ||| | || Sbjct: 514 aatcctgactacaaaggtgtttgccatgttgcacttgcacaagaaggtcattgcaggcca 573 Query: 419 ggcgaggttctccttggtactgattcgcatacctgcaatgctggagcctttggtcagttt 478 || |||||| | | || || || || || || || | ||||||||| |||||||| ||| Sbjct: 574 ggagaggttttgttaggaacagactcacacacttgtactgctggagcatttggtcaattt 633 Query: 479 gcaactggaatcggaaacactgatgctggttttgtgatgggaactggaaaggctcttctc 538 || || || || |||||||||||||| ||||||||| | || |||||||| || || Sbjct: 634 gctacagggattggaaacactgatgcaggttttgtgttaggcactggaaaaatcctcctt 693 Query: 539 aaggtgcccccaaccatcaggttcgtattagatggagaaatgccaccttatttacttgct 598 ||||| || ||||| || ||||| | || ||||| || ||||| |||||| | || Sbjct: 694 aaggttccaccaacgatgaggtttatcttggatggtgagatgcctagttatttgcaagca 753 Query: 599 aaggatctgattttacaaattattggcgagatatctgtatctggtgctacatacagatcg 658 |||||||||||||||||||||||||| || |||||||| ||||||| || |||| || Sbjct: 754 aaggatctgattttacaaattattggtgaaatatctgttgctggtgcaacttacaagacg 813 Query: 659 atggagtttgttggatcaacaatagaaagtctaactatggaagaacgaatgacactgtgc 718 |||||||| ||| |||| || |||||||| | |||||||||| |||||||| ||||| Sbjct: 814 atggagttcagtggtacaactatcgaaagtctgagtatggaagaaagaatgacattgtgc 873 Query: 719 aacatggtt 727 ||||||||| Sbjct: 874 aacatggtt 882
>gb|AY045842.1| Arabidopsis thaliana unknown protein (At4g13430) mRNA, complete cds Length = 1808 Score = 137 bits (69), Expect = 6e-29 Identities = 294/369 (79%) Strand = Plus / Plus Query: 359 aatccggactacaaaggtgtttgccacattgcgctcgcacaagaaggtcactgccgaccg 418 ||||| |||||||||||||||||||| |||| || |||||||||||||| ||| | || Sbjct: 583 aatcctgactacaaaggtgtttgccatgttgcacttgcacaagaaggtcattgcaggcca 642 Query: 419 ggcgaggttctccttggtactgattcgcatacctgcaatgctggagcctttggtcagttt 478 || |||||| | | || || || || || || || | ||||||||| |||||||| ||| Sbjct: 643 ggagaggttttgttaggaacagactcacacacttgtactgctggagcatttggtcaattt 702 Query: 479 gcaactggaatcggaaacactgatgctggttttgtgatgggaactggaaaggctcttctc 538 || || || || |||||||||||||| ||||||||| | || |||||||| || || Sbjct: 703 gctacagggattggaaacactgatgcaggttttgtgttaggcactggaaaaatcctcctt 762 Query: 539 aaggtgcccccaaccatcaggttcgtattagatggagaaatgccaccttatttacttgct 598 ||||| || ||||| || ||||| | || ||||| || ||||| |||||| | || Sbjct: 763 aaggttccaccaacgatgaggtttatcttggatggtgagatgcctagttatttgcaagca 822 Query: 599 aaggatctgattttacaaattattggcgagatatctgtatctggtgctacatacagatcg 658 |||||||||||||||||||||||||| || |||||||| ||||||| || |||| || Sbjct: 823 aaggatctgattttacaaattattggtgaaatatctgttgctggtgcaacttacaagacg 882 Query: 659 atggagtttgttggatcaacaatagaaagtctaactatggaagaacgaatgacactgtgc 718 |||||||| ||| |||| || |||||||| | |||||||||| |||||||| ||||| Sbjct: 883 atggagttcagtggtacaactatcgaaagtctgagtatggaagaaagaatgacattgtgc 942 Query: 719 aacatggtt 727 ||||||||| Sbjct: 943 aacatggtt 951
>gb|AC136679.19| Medicago truncatula clone mth2-22c4, complete sequence Length = 101649 Score = 65.9 bits (33), Expect = 2e-07 Identities = 81/97 (83%) Strand = Plus / Plus Query: 423 aggttctccttggtactgattcgcatacctgcaatgctggagcctttggtcagtttgcaa 482 |||||||| | || |||||||| || || || | ||||||||| |||||||| ||||||| Sbjct: 78438 aggttctcttgggcactgattctcacacttgtactgctggagcatttggtcaatttgcaa 78497 Query: 483 ctggaatcggaaacactgatgctggttttgtgatggg 519 | || || || || |||||||||||||||||| |||| Sbjct: 78498 cagggattggtaatactgatgctggttttgtgttggg 78534 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 695 atggaagaacgaatgacactgtgcaacatggtt 727 |||||||||||||||||| |||||||||||||| Sbjct: 79916 atggaagaacgaatgacattgtgcaacatggtt 79948 Score = 44.1 bits (22), Expect = 0.64 Identities = 43/50 (86%) Strand = Plus / Plus Query: 359 aatccggactacaaaggtgtttgccacattgcgctcgcacaagaaggtca 408 ||||| || |||||||||||||| |||||||| || || || |||||||| Sbjct: 78286 aatccagattacaaaggtgtttgtcacattgctcttgctcaggaaggtca 78335 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 368 tacaaaggtgtttgccacattgcgctcgcacaagaaggtca 408 |||||||||||||| |||||||| || || || |||||||| Sbjct: 91751 tacaaaggtgtttgtcacattgctcttgctcaggaaggtca 91791
>emb|AL161536.2|ATCHRIV36 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 36 Length = 199634 Score = 63.9 bits (32), Expect = 7e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 457 tgctggagcctttggtcagtttgcaactggaatcggaaacactgatgctggttttgtgat 516 ||||||||| |||||||| ||||| || || || |||||||||||||| ||||||||| | Sbjct: 93392 tgctggagcatttggtcaatttgctacagggattggaaacactgatgcaggttttgtgtt 93333 Query: 517 gggaactggaaa 528 || |||||||| Sbjct: 93332 aggcactggaaa 93321 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 359 aatccggactacaaaggtgtttgccacattgcgctcgcacaagaaggtca 408 ||||| |||||||||||||||||||| |||| || |||||||||||||| Sbjct: 93585 aatcctgactacaaaggtgtttgccatgttgcacttgcacaagaaggtca 93536 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Minus Query: 695 atggaagaacgaatgacactgtgcaacatggtt 727 ||||||||| |||||||| |||||||||||||| Sbjct: 92622 atggaagaaagaatgacattgtgcaacatggtt 92590
>emb|AL049608.1|ATT9E8 Arabidopsis thaliana DNA chromosome 4, BAC clone T9E8, partial sequence (ESSA project) Length = 95432 Score = 63.9 bits (32), Expect = 7e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 457 tgctggagcctttggtcagtttgcaactggaatcggaaacactgatgctggttttgtgat 516 ||||||||| |||||||| ||||| || || || |||||||||||||| ||||||||| | Sbjct: 77413 tgctggagcatttggtcaatttgctacagggattggaaacactgatgcaggttttgtgtt 77354 Query: 517 gggaactggaaa 528 || |||||||| Sbjct: 77353 aggcactggaaa 77342 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 359 aatccggactacaaaggtgtttgccacattgcgctcgcacaagaaggtca 408 ||||| |||||||||||||||||||| |||| || |||||||||||||| Sbjct: 77606 aatcctgactacaaaggtgtttgccatgttgcacttgcacaagaaggtca 77557 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Minus Query: 695 atggaagaacgaatgacactgtgcaacatggtt 727 ||||||||| |||||||| |||||||||||||| Sbjct: 76643 atggaagaaagaatgacattgtgcaacatggtt 76611
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 63.9 bits (32), Expect = 7e-07 Identities = 65/76 (85%) Strand = Plus / Minus Query: 135 tgacgcacgacgtctgcggccccggcaccatcgggatcttcaagcaggagttcggggagg 194 |||||||||||||||||||||| ||| ||| |||||||||||||||||||| | Sbjct: 616271 tgacgcacgacgtctgcggcccgccgaccttcgatatcttcaagcaggagttcggcccga 616212 Query: 195 acgccaaggtgtggga 210 |||||||||||||||| Sbjct: 616211 acgccaaggtgtggga 616196 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 233 cccgaccactacatcttcaccgccgacgagc 263 |||||||||||||||||||| ||| |||||| Sbjct: 616173 cccgaccactacatcttcacggccaacgagc 616143
>gb|AC144807.23| Medicago truncatula clone mth2-9j13, complete sequence Length = 115904 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 620 attggcgagatatctgtatctggtgctacatacagatcgatggagtttgttgg 672 |||||||| |||||| | |||||||| ||||||| | |||||||||||||||| Sbjct: 52249 attggcgaaatatctatgtctggtgcaacatacaaaacgatggagtttgttgg 52301 Score = 46.1 bits (23), Expect = 0.16 Identities = 41/47 (87%) Strand = Plus / Plus Query: 458 gctggagcctttggtcagtttgcaactggaatcggaaacactgatgc 504 |||||||| |||||||| ||||| |||||| | || ||||||||||| Sbjct: 51431 gctggagcatttggtcaatttgccactggagttggcaacactgatgc 51477
>gb|AY191286.1| Aster yellows phytoplasma clone A244 genomic sequence Length = 1886 Score = 54.0 bits (27), Expect = 7e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 694 tatggaagaacgaatgacactgtgcaacatg 724 ||||||||||||||||||| ||||||||||| Sbjct: 1507 tatggaagaacgaatgacagtgtgcaacatg 1537
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 207 gggaccgcgagaaggtcgtcatc 229 ||||||||||||||||||||||| Sbjct: 3357927 gggaccgcgagaaggtcgtcatc 3357905
>gb|M15801.1|HUMFN3 Human fibronectin (FN) gene, exon 1, clone pgHF3.7 Length = 742 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Minus Query: 67 ggcgcgggcgtcggagcgcgcgagcc 92 |||||||||||||||||||| ||||| Sbjct: 320 ggcgcgggcgtcggagcgcgggagcc 295
>gb|M26179.1|HUMFNA Human fibronectin DNA Length = 563 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Minus Query: 67 ggcgcgggcgtcggagcgcgcgagcc 92 |||||||||||||||||||| ||||| Sbjct: 517 ggcgcgggcgtcggagcgcgggagcc 492
>ref|NM_001037013.1| Arabidopsis thaliana unknown protein AT5G57790 transcript variant AT5G57790.2 mRNA, complete cds Length = 911 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 cgatgacgacgacggagaaga 62 ||||||||||||||||||||| Sbjct: 132 cgatgacgacgacggagaaga 112
>ref|NM_125163.4| Arabidopsis thaliana unknown protein AT5G57790 transcript variant AT5G57790.1 mRNA, complete cds Length = 1407 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 cgatgacgacgacggagaaga 62 ||||||||||||||||||||| Sbjct: 135 cgatgacgacgacggagaaga 115
>gb|AC121147.8| Mus musculus chromosome 3, clone RP24-369O15, complete sequence Length = 178352 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 678 caatagaaagtctaactatgg 698 ||||||||||||||||||||| Sbjct: 161972 caatagaaagtctaactatgg 161952
>gb|AC116776.12| Mus musculus chromosome 3, clone RP24-472H5, complete sequence Length = 170076 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 678 caatagaaagtctaactatgg 698 ||||||||||||||||||||| Sbjct: 97356 caatagaaagtctaactatgg 97376
>gb|BT014778.1| Arabidopsis thaliana At5g57790 gene, complete cds Length = 893 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 cgatgacgacgacggagaaga 62 ||||||||||||||||||||| Sbjct: 109 cgatgacgacgacggagaaga 89
>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence Length = 1212674 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 74 gcgtcggagcgcgcgagcctcgagc 98 |||||||||||||| |||||||||| Sbjct: 698624 gcgtcggagcgcgcaagcctcgagc 698600
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome Length = 3598621 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 322 cttttacgacatcaaggacctcagc 346 ||||||||||||||||||| ||||| Sbjct: 718077 cttttacgacatcaaggacttcagc 718053
>gb|AC163889.2| Glomus intraradices clone JGIATSX-5M1, complete sequence Length = 39326 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 cgaccactacatcttcaccgc 255 ||||||||||||||||||||| Sbjct: 3324 cgaccactacatcttcaccgc 3344 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 cgaccactacatcttcaccgc 255 ||||||||||||||||||||| Sbjct: 2448 cgaccactacatcttcaccgc 2468
>emb|BX822988.1|CNS0A615 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB79ZC07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1133 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgatgacgacgacggagaaga 62 ||||||||||||||||||||| Sbjct: 917 cgatgacgacgacggagaaga 937
>emb|BX832964.1|CNS0A235 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL26ZF05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 964 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 cgatgacgacgacggagaaga 62 ||||||||||||||||||||| Sbjct: 130 cgatgacgacgacggagaaga 110
>emb|BX830081.1|CNS0A18Q Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB58ZE05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1406 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 cgatgacgacgacggagaaga 62 ||||||||||||||||||||| Sbjct: 135 cgatgacgacgacggagaaga 115
>emb|BX841921.1|CNS09Y2X Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL45ZA10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 937 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgatgacgacgacggagaaga 62 ||||||||||||||||||||| Sbjct: 814 cgatgacgacgacggagaaga 834
>dbj|AB013396.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTI20 Length = 79676 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cgatgacgacgacggagaaga 62 ||||||||||||||||||||| Sbjct: 10256 cgatgacgacgacggagaaga 10276
>gb|AC099640.6| Mus musculus chromosome 1, clone RP24-339K18, complete sequence Length = 177962 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 507 gttttgtgatgggaactggaaagg 530 ||||||||| |||||||||||||| Sbjct: 35897 gttttgtgacgggaactggaaagg 35920
>gb|AF041836.1| Buchnera aphidicola (Schizaphis graminum) plasmid pLeu-Sg, complete plasmid sequence Length = 7967 Score = 40.1 bits (20), Expect = 10.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 694 tatggaagaacgaatgacactgtgcaacatgg 725 ||||||||||||||||||| | || ||||||| Sbjct: 6567 tatggaagaacgaatgacaatttgtaacatgg 6598
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 cgacggagaagatcctggcgcggg 74 |||||| ||||||||||||||||| Sbjct: 309772 cgacggcgaagatcctggcgcggg 309749
>ref|XM_781719.1| PREDICTED: Strongylocentrotus purpuratus similar to fibrillin (3I729) (LOC581732), mRNA Length = 3226 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 625 cgagatatctgtatctggtgctac 648 |||||| ||||||||||||||||| Sbjct: 105 cgagatttctgtatctggtgctac 82
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16 Length = 349008 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ctgcggccccggcaccatcg 167 |||||||||||||||||||| Sbjct: 327888 ctgcggccccggcaccatcg 327869
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ctgcggccccggcaccatcg 167 |||||||||||||||||||| Sbjct: 235727 ctgcggccccggcaccatcg 235708
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ctgcggccccggcaccatcg 167 |||||||||||||||||||| Sbjct: 102998 ctgcggccccggcaccatcg 102979
>gb|AC136504.23| Medicago truncatula clone mth2-13m6, complete sequence Length = 107180 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gatgacgacgacggagaaga 62 |||||||||||||||||||| Sbjct: 83303 gatgacgacgacggagaaga 83322
>emb|BX682550.7| Zebrafish DNA sequence from clone DKEY-93N13 in linkage group 3, complete sequence Length = 149762 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ttcaccgccgacgagcgggc 267 |||||||||||||||||||| Sbjct: 43693 ttcaccgccgacgagcgggc 43674
>gb|CP000135.1| Rhizobium etli CFN 42 plasmid p42b, complete sequence Length = 184338 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ctcagggacttctgccagga 306 |||||||||||||||||||| Sbjct: 3312 ctcagggacttctgccagga 3331
>gb|AC162465.3| Mus musculus 6 BAC RP24-108G5 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 203546 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gtgtttgccacattgcgctc 394 |||||||||||||||||||| Sbjct: 46924 gtgtttgccacattgcgctc 46905
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 tcaccgccgacgagcgggcc 268 |||||||||||||||||||| Sbjct: 3326977 tcaccgccgacgagcgggcc 3326996
>gb|AC158657.2| Mus musculus 6 BAC RP23-395C12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 202215 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 gtgtttgccacattgcgctc 394 |||||||||||||||||||| Sbjct: 95361 gtgtttgccacattgcgctc 95380
>gb|AY325816.1| Zea mays BAC clone Z013I05, complete sequence Length = 152337 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 tcaccgccgacgagcgggcc 268 |||||||||||||||||||| Sbjct: 29588 tcaccgccgacgagcgggcc 29569
>emb|BX000527.12| Mouse DNA sequence from clone RP23-67M6 on chromosome X, complete sequence Length = 5534 Score = 40.1 bits (20), Expect = 10.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 664 gtttgttggatcaacaatagaaagtctaacta 695 ||||||| | ||||||||||||| |||||||| Sbjct: 2197 gtttgttagttcaacaatagaaactctaacta 2228
>dbj|AP003355.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1517D11 Length = 153728 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 ctggagcctttggtcagttt 478 |||||||||||||||||||| Sbjct: 52515 ctggagcctttggtcagttt 52496 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,146,824 Number of Sequences: 3902068 Number of extensions: 5146824 Number of successful extensions: 117859 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117299 Number of HSP's gapped (non-prelim): 555 length of query: 727 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 704 effective length of database: 17,143,297,704 effective search space: 12068881583616 effective search space used: 12068881583616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)