Clone Name | bah63i15 |
---|---|
Clone Library Name | barley_pub |
>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA, complete cds Length = 3054 Score = 942 bits (475), Expect = 0.0 Identities = 481/483 (99%) Strand = Plus / Plus Query: 68 ttgtccgccgactccaatggggcggccgttggcacggtaacccgcccggacgtccacgtc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 283 ttgtccgccgactccaatggggcggccgttggcacggtaacccgcccggacgtccacgtc 342 Query: 128 caggaccgcacgcaggccaccgagatgaaggccacggtgacggtgcacatgagtaaggca 187 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 343 caggaccgcacgcacgccaccgagatgaaggccacggtgacggtgcacatgagtaaggca 402 Query: 188 gccggggttcgtgatttcctctacgacctcatcctcaaaacctggctgcacgtcgacctc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 403 gccggggttcgtgatttcctctacgacctcatcctcaaaacctggctgcacgtcgacctc 462 Query: 248 gtcagctcagagttggatccacaaacggggcaggagcgggagcccatctccggggccgtc 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 463 gtcagctcagagttggatccacaaacggggcaggagcgggagcccatctccggggccgtc 522 Query: 308 aagcactcgggtagagtggacgacgagtgggacatgtacgaggcgaccttcaaggtgccg 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 523 aagcactcgggtagagtggacgacgagtgggacatgtacgaggcgaccttcaaggtgccg 582 Query: 368 gcgtcgttcggacccatcggcgccgtgcaggtcacaaactaccaccacagcgagatgctg 427 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 583 gcgtcgttcggacccatcggcgccgtgcaggtcacaaactaccaccacagcgagatgttg 642 Query: 428 ctgggggacatcgaggtcttccccaccggccaggaggagtccgccgtcaccttccactgc 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 643 ctgggggacatcgaggtcttccccaccggccaggaggagtccgccgtcaccttccactgc 702 Query: 488 aagtcctggatcgacccctcgcactgcacccccgacaagcgtgtcttctttcccgcgcac 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 703 aagtcctggatcgacccctcgcactgcacccccgacaagcgtgtcttctttcccgcgcac 762 Query: 548 tct 550 ||| Sbjct: 763 tct 765 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1 ccgccgcaccagtgtctccaaggtgg 26 |||||||||||||||||||||||||| Sbjct: 216 ccgccgcaccagtgtctccaaggtgg 241
>emb|AJ507212.1|HVU507212 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:2 gene) Length = 3023 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 479 ttccactgcaagtcctggatcgacccctcgcactgcacccccgacaagcgt 529 ||||||||| | ||||||||||||||||| || |||| ||||||||||||| Sbjct: 690 ttccactgccaatcctggatcgacccctcacattgcagccccgacaagcgt 740 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 245 ctcgtcagctcagagttggatccacaaacggggcagga 282 ||||||||||| |||||||||||| ||||||||||||| Sbjct: 444 ctcgtcagctccgagttggatccaaaaacggggcagga 481 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 148 cgagatgaaggccacggtgacggtgcacatga 179 ||||||||||||||||||| |||||||||||| Sbjct: 326 cgagatgaaggccacggtgtcggtgcacatga 357
>gb|AY103918.1| Zea mays PCO093660 mRNA sequence Length = 1752 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 356 ttcaaggtgccggcgtcgttcgg 378 ||||||||||||||||||||||| Sbjct: 620 ttcaaggtgccggcgtcgttcgg 642 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 468 ccgccgtcaccttccactgcaagtcctgg 496 |||||||||||||| ||||||| |||||| Sbjct: 732 ccgccgtcaccttcgactgcaactcctgg 760
>ref|XM_464447.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3123 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Plus Query: 467 tccgccgtcaccttccactgcaagtcctgg 496 ||||||||||||||| ||||||| |||||| Sbjct: 665 tccgccgtcaccttcgactgcaactcctgg 694
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Minus Query: 467 tccgccgtcaccttccactgcaagtcctgg 496 ||||||||||||||| ||||||| |||||| Sbjct: 5281867 tccgccgtcaccttcgactgcaactcctgg 5281838
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1225_F07 Length = 142772 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Minus Query: 467 tccgccgtcaccttccactgcaagtcctgg 496 ||||||||||||||| ||||||| |||||| Sbjct: 8170 tccgccgtcaccttcgactgcaactcctgg 8141
>dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full insert sequence Length = 3160 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Plus Query: 467 tccgccgtcaccttccactgcaagtcctgg 496 ||||||||||||||| ||||||| |||||| Sbjct: 664 tccgccgtcaccttcgactgcaactcctgg 693
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I, complete sequence Length = 691920 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 tgcaagtcctggatcgacccc 505 ||||||||||||||||||||| Sbjct: 497118 tgcaagtcctggatcgacccc 497098
>ref|NM_207980.1| Eremothecium gossypii AAR086Wp (AAR086W), mRNA Length = 2424 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 tgcaagtcctggatcgacccc 505 ||||||||||||||||||||| Sbjct: 518 tgcaagtcctggatcgacccc 498
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 cgaggtcttccccaccggcc 458 |||||||||||||||||||| Sbjct: 928242 cgaggtcttccccaccggcc 928223
>gb|AC114684.10| Homo sapiens chromosome 18, clone RP11-1058N17, complete sequence Length = 196117 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 408 accaccacagcgagatgctgctgg 431 |||||||||| ||||||||||||| Sbjct: 191342 accaccacagggagatgctgctgg 191365
>emb|AL138821.12| Human DNA sequence from clone RP11-381L18 on chromosome 13 Contains part of the ATP7B gene for ATPase Cu++ transporting, beta polypeptide (Wilson disease) and a fatty acid binding protein pseudogene, complete sequence Length = 41669 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 266 ccacaaacggggcaggagcgggag 289 |||| ||||||||||||||||||| Sbjct: 16581 ccaccaacggggcaggagcgggag 16604
>gb|AC093567.13| Homo sapiens chromosome 18, clone RP11-484L8, complete sequence Length = 174698 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 408 accaccacagcgagatgctgctgg 431 |||||||||| ||||||||||||| Sbjct: 63246 accaccacagggagatgctgctgg 63223
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 469 cgccgtcaccttccactgcaagtcctggatcg 500 ||||||||||||||| ||||| || ||||||| Sbjct: 22955232 cgccgtcaccttccaatgcaactcgtggatcg 22955263
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 469 cgccgtcaccttccactgcaagtcctggatcg 500 ||||||||||||||| ||||| || ||||||| Sbjct: 22883423 cgccgtcaccttccaatgcaactcgtggatcg 22883454
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 469 cgccgtcaccttccactgcaagtcctggatcg 500 ||||||||||||||| ||||| || ||||||| Sbjct: 64509 cgccgtcaccttccaatgcaactcgtggatcg 64540
>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148705 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 469 cgccgtcaccttccactgcaagtcctggatcg 500 ||||||||||||||| ||||| || ||||||| Sbjct: 1593 cgccgtcaccttccaatgcaactcgtggatcg 1562
>dbj|AB071372.1| Asterina pectinifera ApIP3R mRNA for inositol 1,4,5-trisphosphate receptor, complete cds Length = 9374 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 141 aggccaccgagatgaaggccacggtgac 168 |||||| |||||| |||||||||||||| Sbjct: 5699 aggccagcgagatcaaggccacggtgac 5726 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,737,627 Number of Sequences: 3902068 Number of extensions: 2737627 Number of successful extensions: 48628 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48547 Number of HSP's gapped (non-prelim): 81 length of query: 550 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 527 effective length of database: 17,143,297,704 effective search space: 9034517890008 effective search space used: 9034517890008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)