ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah63i15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible l... 942 0.0
2emb|AJ507212.1|HVU507212 Hordeum vulgare mRNA for lipoxygenase 2... 62 2e-06
3gb|AY103918.1| Zea mays PCO093660 mRNA sequence 46 0.12
4ref|XM_464447.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.48
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
6dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
7dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.48
8gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 1.9
9ref|NM_207980.1| Eremothecium gossypii AAR086Wp (AAR086W), mRNA 42 1.9
10gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 7.5
11gb|AC114684.10| Homo sapiens chromosome 18, clone RP11-1058N17, ... 40 7.5
12emb|AL138821.12| Human DNA sequence from clone RP11-381L18 on ch... 40 7.5
13gb|AC093567.13| Homo sapiens chromosome 18, clone RP11-484L8, co... 40 7.5
14dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
15gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
16emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa... 40 7.5
17emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa... 40 7.5
18dbj|AB071372.1| Asterina pectinifera ApIP3R mRNA for inositol 1,... 40 7.5

>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA,
           complete cds
          Length = 3054

 Score =  942 bits (475), Expect = 0.0
 Identities = 481/483 (99%)
 Strand = Plus / Plus

                                                                       
Query: 68  ttgtccgccgactccaatggggcggccgttggcacggtaacccgcccggacgtccacgtc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttgtccgccgactccaatggggcggccgttggcacggtaacccgcccggacgtccacgtc 342

                                                                       
Query: 128 caggaccgcacgcaggccaccgagatgaaggccacggtgacggtgcacatgagtaaggca 187
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 caggaccgcacgcacgccaccgagatgaaggccacggtgacggtgcacatgagtaaggca 402

                                                                       
Query: 188 gccggggttcgtgatttcctctacgacctcatcctcaaaacctggctgcacgtcgacctc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gccggggttcgtgatttcctctacgacctcatcctcaaaacctggctgcacgtcgacctc 462

                                                                       
Query: 248 gtcagctcagagttggatccacaaacggggcaggagcgggagcccatctccggggccgtc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gtcagctcagagttggatccacaaacggggcaggagcgggagcccatctccggggccgtc 522

                                                                       
Query: 308 aagcactcgggtagagtggacgacgagtgggacatgtacgaggcgaccttcaaggtgccg 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aagcactcgggtagagtggacgacgagtgggacatgtacgaggcgaccttcaaggtgccg 582

                                                                       
Query: 368 gcgtcgttcggacccatcggcgccgtgcaggtcacaaactaccaccacagcgagatgctg 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 583 gcgtcgttcggacccatcggcgccgtgcaggtcacaaactaccaccacagcgagatgttg 642

                                                                       
Query: 428 ctgggggacatcgaggtcttccccaccggccaggaggagtccgccgtcaccttccactgc 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ctgggggacatcgaggtcttccccaccggccaggaggagtccgccgtcaccttccactgc 702

                                                                       
Query: 488 aagtcctggatcgacccctcgcactgcacccccgacaagcgtgtcttctttcccgcgcac 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 aagtcctggatcgacccctcgcactgcacccccgacaagcgtgtcttctttcccgcgcac 762

              
Query: 548 tct 550
           |||
Sbjct: 763 tct 765



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 1   ccgccgcaccagtgtctccaaggtgg 26
           ||||||||||||||||||||||||||
Sbjct: 216 ccgccgcaccagtgtctccaaggtgg 241



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>emb|AJ507212.1|HVU507212 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:2 gene)
          Length = 3023

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 479 ttccactgcaagtcctggatcgacccctcgcactgcacccccgacaagcgt 529
           ||||||||| | ||||||||||||||||| || |||| |||||||||||||
Sbjct: 690 ttccactgccaatcctggatcgacccctcacattgcagccccgacaagcgt 740



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 245 ctcgtcagctcagagttggatccacaaacggggcagga 282
           ||||||||||| |||||||||||| |||||||||||||
Sbjct: 444 ctcgtcagctccgagttggatccaaaaacggggcagga 481



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 148 cgagatgaaggccacggtgacggtgcacatga 179
           ||||||||||||||||||| ||||||||||||
Sbjct: 326 cgagatgaaggccacggtgtcggtgcacatga 357



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>gb|AY103918.1| Zea mays PCO093660 mRNA sequence
          Length = 1752

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 356 ttcaaggtgccggcgtcgttcgg 378
           |||||||||||||||||||||||
Sbjct: 620 ttcaaggtgccggcgtcgttcgg 642



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 468 ccgccgtcaccttccactgcaagtcctgg 496
           |||||||||||||| ||||||| ||||||
Sbjct: 732 ccgccgtcaccttcgactgcaactcctgg 760



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>ref|XM_464447.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3123

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 467 tccgccgtcaccttccactgcaagtcctgg 496
           ||||||||||||||| ||||||| ||||||
Sbjct: 665 tccgccgtcaccttcgactgcaactcctgg 694



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 467     tccgccgtcaccttccactgcaagtcctgg 496
               ||||||||||||||| ||||||| ||||||
Sbjct: 5281867 tccgccgtcaccttcgactgcaactcctgg 5281838



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>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1225_F07
          Length = 142772

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 467  tccgccgtcaccttccactgcaagtcctgg 496
            ||||||||||||||| ||||||| ||||||
Sbjct: 8170 tccgccgtcaccttcgactgcaactcctgg 8141



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>dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full
           insert sequence
          Length = 3160

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 467 tccgccgtcaccttccactgcaagtcctgg 496
           ||||||||||||||| ||||||| ||||||
Sbjct: 664 tccgccgtcaccttcgactgcaactcctgg 693



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>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I,
              complete sequence
          Length = 691920

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 485    tgcaagtcctggatcgacccc 505
              |||||||||||||||||||||
Sbjct: 497118 tgcaagtcctggatcgacccc 497098



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>ref|NM_207980.1| Eremothecium gossypii AAR086Wp (AAR086W), mRNA
          Length = 2424

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 485 tgcaagtcctggatcgacccc 505
           |||||||||||||||||||||
Sbjct: 518 tgcaagtcctggatcgacccc 498



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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 439    cgaggtcttccccaccggcc 458
              ||||||||||||||||||||
Sbjct: 928242 cgaggtcttccccaccggcc 928223



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>gb|AC114684.10| Homo sapiens chromosome 18, clone RP11-1058N17, complete sequence
          Length = 196117

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 408    accaccacagcgagatgctgctgg 431
              |||||||||| |||||||||||||
Sbjct: 191342 accaccacagggagatgctgctgg 191365



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>emb|AL138821.12| Human DNA sequence from clone RP11-381L18 on chromosome 13 Contains
             part of the ATP7B gene for ATPase Cu++ transporting, beta
             polypeptide (Wilson disease) and a fatty acid binding
             protein pseudogene, complete sequence
          Length = 41669

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 266   ccacaaacggggcaggagcgggag 289
             |||| |||||||||||||||||||
Sbjct: 16581 ccaccaacggggcaggagcgggag 16604



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>gb|AC093567.13| Homo sapiens chromosome 18, clone RP11-484L8, complete sequence
          Length = 174698

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 408   accaccacagcgagatgctgctgg 431
             |||||||||| |||||||||||||
Sbjct: 63246 accaccacagggagatgctgctgg 63223



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 469      cgccgtcaccttccactgcaagtcctggatcg 500
                ||||||||||||||| ||||| || |||||||
Sbjct: 22955232 cgccgtcaccttccaatgcaactcgtggatcg 22955263



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 469      cgccgtcaccttccactgcaagtcctggatcg 500
                ||||||||||||||| ||||| || |||||||
Sbjct: 22883423 cgccgtcaccttccaatgcaactcgtggatcg 22883454



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>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 155568

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 469   cgccgtcaccttccactgcaagtcctggatcg 500
             ||||||||||||||| ||||| || |||||||
Sbjct: 64509 cgccgtcaccttccaatgcaactcgtggatcg 64540



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>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 148705

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 469  cgccgtcaccttccactgcaagtcctggatcg 500
            ||||||||||||||| ||||| || |||||||
Sbjct: 1593 cgccgtcaccttccaatgcaactcgtggatcg 1562



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>dbj|AB071372.1| Asterina pectinifera ApIP3R mRNA for inositol 1,4,5-trisphosphate
            receptor, complete cds
          Length = 9374

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 141  aggccaccgagatgaaggccacggtgac 168
            |||||| |||||| ||||||||||||||
Sbjct: 5699 aggccagcgagatcaaggccacggtgac 5726


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,737,627
Number of Sequences: 3902068
Number of extensions: 2737627
Number of successful extensions: 48628
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48547
Number of HSP's gapped (non-prelim): 81
length of query: 550
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 527
effective length of database: 17,143,297,704
effective search space: 9034517890008
effective search space used: 9034517890008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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