>Y964_METJA (Q58374) Hypothetical protein MJ0964|
          Length = 680

 Score = 33.5 bits (75), Expect = 0.57
 Identities = 18/64 (28%), Positives = 37/64 (57%)
 Frame = +2

Query: 443 RFDAIGQLKEFPCVSLSSTEESRRIDEVAKPRKEYQDTPMMYVEACENHVHAKKKIQVLS 622
           R DA G +     ++  + EE ++I E+ K +K+Y+   + ++ + +N +H KK  +++ 
Sbjct: 128 RIDANGNI-----ITPLNEEELQKIAEIIK-KKDYEVVVISFLHSYKNPIHEKKAREIIK 181

Query: 623 NGCS 634
           N CS
Sbjct: 182 NLCS 185

>UNC89_CAEEL (O01761) Muscle M-line assembly protein unc-89 (Uncoordinated protein|
            89)
          Length = 8081

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +3

Query: 27   DP-PPXXWFRRILWLQDLPNTVLKAMPCSCNVFIVSRHRLTIKLVNQTQADNSNTYLKIE 203
            DP P   W+R    L++ P TV++  P       V+   ++ + + + +A+N++   K +
Sbjct: 5513 DPFPEIKWYRNGQLLRNGPRTVIETSPDGSCSLTVNESTMSDEGIYRCEAENAHGKAKTQ 5572

Query: 204  SVSHREFAL 230
            + +H + AL
Sbjct: 5573 ATAHVQMAL 5581

>RPOA_LDVC (Q06502) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
            Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
            papain-like cysteine proteinase (EC 3.4.22.-)
            (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
            (EC 3.4.22.-) (PCP1
          Length = 3637

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -3

Query: 645  CKSSLHPLESTWI-FFL----AWT*FSQASTYIIGVSWYSFLGFATSSI 514
            CK SLHP+   W+ FFL     W     AS  ++  SW  FL  ATSS+
Sbjct: 1411 CKVSLHPITLVWVQFFLLAVNVWA--GVASVVVLISSW--FLARATSSL 1455


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,359,138
Number of Sequences: 219361
Number of extensions: 1538179
Number of successful extensions: 3609
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3609
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)