>CWC15_EMENI (Q5B020) Pre-mRNA-splicing factor cwc15|
          Length = 232

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 51/201 (25%), Positives = 73/201 (36%), Gaps = 13/201 (6%)
 Frame = +1

Query: 79  PTWAPAKGGNEQGGTRIFGPSGKYSSRDLAAHTSLKPRKEGQQTQEEVQKXXXXXXXXXX 258
           PT+ PA+G        + GP+  Y  R L A+T LK R+ GQ T+ E  +          
Sbjct: 7   PTFDPARGKEA-----LRGPA--YHQRLLPAYTHLKVRQSGQGTEGEAARRDLRAELLQA 59

Query: 259 XXKHFSSKDKSYVDERDRRKSSSLLLEGS-------KRDED------KIVPREIXXXXXX 399
              HF+ K+ + V E     +    LEG+       + +ED      +I+          
Sbjct: 60  EAAHFAKKNGAPVPEASAESTPKRQLEGAPANGGDGELEEDPEAKRRRILEETREIDADS 119

Query: 400 XXXXXXXXXXXXXXXXXXXXXXXXXXRIKKERAEDXXXXXXXXXXXXXXXXXXXXXXGNP 579
                                     +IKKER                         GNP
Sbjct: 120 EASEEDSSEDESDDEDEAAELMRELEKIKKERLAQKEKEERERAAKEEEQREVDIARGNP 179

Query: 580 LINMNNSGSFNVKRRWDDDVV 642
           L+N ++   FN+KRRWDDDVV
Sbjct: 180 LLNPSD---FNIKRRWDDDVV 197

>CWC15_SCHPO (P78794) Pre-mRNA-splicing factor cwc15 (Complexed with cdc5|
           protein 15) (Cell cycle control protein cwf15)
          Length = 265

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 58/230 (25%), Positives = 73/230 (31%), Gaps = 42/230 (18%)
 Frame = +1

Query: 79  PTWAPAKGGNEQGGTRIFGPSGKYSSRDLAAHTSLKPRKEGQQTQEEVQKXXXXXXXXXX 258
           P + PA+G +E   TRI       SSR L AH  LK R+E Q T+EEV+K          
Sbjct: 7   PQFDPARGHSEMAPTRIT------SSRALPAHLKLKYRQESQGTEEEVRKQDLREALLRA 60

Query: 259 XXKHF-------------------------SSKDKSYVD---------------ERDRRK 318
              HF                         S+ DK   D               + D   
Sbjct: 61  EAAHFATQEHGASSEEVSQNSKLIEGFTSPSTDDKPNNDVEVDYQELLRQTLEADEDASD 120

Query: 319 SSSLLLEGSKRDEDKIVPR--EIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIKKE 492
           S   +   +K  E  I  R  E                                  IK+E
Sbjct: 121 SDDSVDSSNKNSEVSIKRRKTESNSQESVDSSNSESSDEESDSEDETQQLLRELENIKQE 180

Query: 493 RAEDXXXXXXXXXXXXXXXXXXXXXXGNPLINMNNSGSFNVKRRWDDDVV 642
           R  +                      GN L+N  +SGSF VKRRWD+DVV
Sbjct: 181 RKREQMLQEEKNRALEQEKREREIAFGNELLNKASSGSFQVKRRWDEDVV 230

>CWC15_YARLI (Q6C0E6) Pre-mRNA-splicing factor CWC15|
          Length = 215

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +1

Query: 478 RIKKERAEDXXXXXXXXXXXXXXXXXXXXXXGNPLINMNNSGSFNVKRRWDDDVV 642
           RIK+ERA+                       GNPL+N        +KR+W++DVV
Sbjct: 133 RIKQERAQAKAREEERLALEEAKAREEQVAFGNPLMN-----PVAIKRKWNEDVV 182

>CWC15_ASHGO (Q750V7) Pre-mRNA-splicing factor CWC15|
          Length = 184

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 94  AKGGNEQGGTRIFGPSGKYSSRDLAAHTSLKPRKEGQQTQEEVQK 228
           A+ G + G    + P+G   +R L  H ++K R+EG  T E+ ++
Sbjct: 11  ARSGTKSGVAGEYVPTGVKHARLLPGHRTVKRRREGGATAEDEER 55


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,920,177
Number of Sequences: 219361
Number of extensions: 858725
Number of successful extensions: 1596
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1595
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)