>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  236 bits (601), Expect = 4e-62
 Identities = 116/116 (100%), Positives = 116/116 (100%)
 Frame = +1

Query: 226 MASAFSSTVGAPASTPTIFLGKKVKNYYHGGNKMKSRVVRVMAAKKELDQGKQTDADRWK 405
           MASAFSSTVGAPASTPTIFLGKKVKNYYHGGNKMKSRVVRVMAAKKELDQGKQTDADRWK
Sbjct: 1   MASAFSSTVGAPASTPTIFLGKKVKNYYHGGNKMKSRVVRVMAAKKELDQGKQTDADRWK 60

Query: 406 GLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTM 573
           GLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTM
Sbjct: 61  GLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTM 116

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  177 bits (449), Expect = 2e-44
 Identities = 91/122 (74%), Positives = 98/122 (80%), Gaps = 6/122 (4%)
 Frame = +1

Query: 226 MASAFSSTVGAPASTPTIFLGKKVKNY------YHGGNKMKSRVVRVMAAKKELDQGKQT 387
           MA+AFSSTVGAPASTPT FLGKK+K        YHG +   S + R     KELD+GKQT
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKS---SNINRFKVMAKELDEGKQT 57

Query: 388 DADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDN 567
           D DRWKGLAYDISDDQQDITRGKG VDSLFQAP GDGTHEA+LSSYEY+SQGLR YDFDN
Sbjct: 58  DQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDN 117

Query: 568 TM 573
           TM
Sbjct: 118 TM 119

>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  162 bits (410), Expect = 6e-40
 Identities = 87/122 (71%), Positives = 98/122 (80%), Gaps = 6/122 (4%)
 Frame = +1

Query: 226 MASAFSSTVGAPASTPTIFLGKKVKNY------YHGGNKMKSRVVRVMAAKKELDQGKQT 387
           MA+AFSSTVGAPASTPT FLGKK+K        YHG +   +R   VMAA+  +D+ + T
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFT-VMAAEN-IDEKRNT 58

Query: 388 DADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDN 567
           D  +WKGLAYDISDDQQDITRGKGIVDSLFQAP G GTHEA+LSSYEY+SQGLRKYDFDN
Sbjct: 59  D--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDN 116

Query: 568 TM 573
           TM
Sbjct: 117 TM 118

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  160 bits (404), Expect = 3e-39
 Identities = 84/125 (67%), Positives = 97/125 (77%), Gaps = 9/125 (7%)
 Frame = +1

Query: 226 MASAFSSTVGAPASTPT--IFLGKKVKN-------YYHGGNKMKSRVVRVMAAKKELDQG 378
           MA+AFSSTVGAPASTPT   FLGKK+          YHG +   +   + MAAK E+D+ 
Sbjct: 1   MAAAFSSTVGAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAK-EVDET 59

Query: 379 KQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYD 558
           KQTD DRWKGLAYDISDDQQDITRGKG+VD+LFQAPMGDGTH A+LSSY+YISQG + Y+
Sbjct: 60  KQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYN 119

Query: 559 FDNTM 573
           FDN M
Sbjct: 120 FDNMM 124

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  132 bits (333), Expect = 5e-31
 Identities = 70/113 (61%), Positives = 83/113 (73%), Gaps = 2/113 (1%)
 Frame = +1

Query: 241 SSTVGAPASTPTIFLGKKVKNY--YHGGNKMKSRVVRVMAAKKELDQGKQTDADRWKGLA 414
           S  V APAST   FLGKKV     +   NK  +   +V+A K++    KQTD DRW+GLA
Sbjct: 23  SGAVSAPAST---FLGKKVVTVSRFAQSNKKSNGSFKVLAVKED----KQTDGDRWRGLA 75

Query: 415 YDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTM 573
           YD SDDQQDITRGKG+VDS+FQAPMG GTH A+LSSYEY+SQGLR+Y+ DN M
Sbjct: 76  YDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMM 128

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  129 bits (324), Expect = 6e-30
 Identities = 62/123 (50%), Positives = 86/123 (69%), Gaps = 3/123 (2%)
 Frame = +1

Query: 214 SINTMASAFSSTVGAPASTPTIFLGKKVKNYYHGG---NKMKSRVVRVMAAKKELDQGKQ 384
           ++N    + +++V   +   T F GK +K  Y  G    K+ ++ +R++A + ++D  KQ
Sbjct: 10  AVNKTPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQ 69

Query: 385 TDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFD 564
           TD+DRWKGL  D SDDQQDITRGKG+VDSLFQAP G GTH A+L SYEY+SQGLR+Y+ D
Sbjct: 70  TDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLD 129

Query: 565 NTM 573
           N +
Sbjct: 130 NKL 132

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  127 bits (320), Expect = 2e-29
 Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 3/138 (2%)
 Frame = +1

Query: 169 LETTVIKLSAARRERSINTMASAFSSTVGAPASTPTIFLGKKVKNYYHGG---NKMKSRV 339
           + T+V  + AA      N    + +++V   +   T F GK +K  Y  G    K+ +R 
Sbjct: 1   MATSVSTIGAA------NKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRS 54

Query: 340 VRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILS 519
           +R+ A +K+ D  KQT +DRWKGL  D SDDQQDI RGKG+VDSLFQAP G GTH A+L 
Sbjct: 55  LRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQ 114

Query: 520 SYEYISQGLRKYDFDNTM 573
           SYEY+SQGLR+Y+ DNT+
Sbjct: 115 SYEYVSQGLRQYNMDNTL 132

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  127 bits (318), Expect = 3e-29
 Identities = 68/113 (60%), Positives = 83/113 (73%), Gaps = 2/113 (1%)
 Frame = +1

Query: 241 SSTVGAPASTPTIFLGKKVK--NYYHGGNKMKSRVVRVMAAKKELDQGKQTDADRWKGLA 414
           SS+   P+ST   FLG  +K  N     +K+ S  +R++A+   +D+ KQTD DRWKGLA
Sbjct: 22  SSSASVPSST---FLGSSLKKVNSRFTNSKVSSGSLRIVAS---VDEDKQTDKDRWKGLA 75

Query: 415 YDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTM 573
           +D SDDQQDITRGKG VDSLFQAP G GTH AI+SSYEYIS GLR+Y+FDN M
Sbjct: 76  FDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNM 128

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  122 bits (305), Expect = 9e-28
 Identities = 59/121 (48%), Positives = 86/121 (71%), Gaps = 3/121 (2%)
 Frame = +1

Query: 214 SINTMASAFSSTVGAPASTPTIFLG---KKVKNYYHGGNKMKSRVVRVMAAKKELDQGKQ 384
           ++N      + + G  +   + F G   KKV +     +K+ S   +++AA KE+++ +Q
Sbjct: 10  AVNRTLLNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQ 69

Query: 385 TDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFD 564
           T+ DRW+GLAYD+SDDQQDITRGKG+VDSLFQAPM  GTH A++SS++Y+S GLR+Y+FD
Sbjct: 70  TEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFD 129

Query: 565 N 567
           N
Sbjct: 130 N 130

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  120 bits (300), Expect = 4e-27
 Identities = 67/131 (51%), Positives = 85/131 (64%), Gaps = 15/131 (11%)
 Frame = +1

Query: 226 MASAFSSTVGAPASTP---------------TIFLGKKVKNYYHGGNKMKSRVVRVMAAK 360
           MA+A+S TVGA    P               T F G  +K       K  S   +++A  
Sbjct: 1   MAAAYS-TVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVA-- 57

Query: 361 KELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQ 540
           +E+ + +QTD D+WKGLAYDISDDQQDITRGKG+VD+LFQAPM  GTH A++SSY+YISQ
Sbjct: 58  QEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQ 117

Query: 541 GLRKYDFDNTM 573
           GLR+Y+ DN M
Sbjct: 118 GLRQYNLDNNM 128

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  120 bits (300), Expect = 4e-27
 Identities = 67/131 (51%), Positives = 85/131 (64%), Gaps = 15/131 (11%)
 Frame = +1

Query: 226 MASAFSSTVGAPASTP---------------TIFLGKKVKNYYHGGNKMKSRVVRVMAAK 360
           MA+A+S TVGA    P               T F G  +K       K  S   +++A  
Sbjct: 1   MAAAYS-TVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVA-- 57

Query: 361 KELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQ 540
           +E+ + +QTD D+WKGLAYDISDDQQDITRGKG+VD+LFQAPM  GTH A++SSY+YISQ
Sbjct: 58  QEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQ 117

Query: 541 GLRKYDFDNTM 573
           GLR+Y+ DN M
Sbjct: 118 GLRQYNLDNNM 128

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  118 bits (295), Expect = 1e-26
 Identities = 60/106 (56%), Positives = 78/106 (73%), Gaps = 4/106 (3%)
 Frame = +1

Query: 253 GAPASTPT-IFLGKKVKNYYHG---GNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYD 420
           GA AS PT  F G  +K         +K+ +   +++AA+KE+++ +QT+ DRWKGLAYD
Sbjct: 22  GAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYD 81

Query: 421 ISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYD 558
           ISDDQQDITRGKG+VD LFQAPM  GTH A++SSYEY+S GLR+ D
Sbjct: 82  ISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLRQLD 127

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score =  112 bits (279), Expect = 1e-24
 Identities = 56/99 (56%), Positives = 73/99 (73%), Gaps = 1/99 (1%)
 Frame = +1

Query: 280 FLGKKVK-NYYHGGNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGK 456
           FLG ++K +     +KM +   +++A   E D+ KQT+ D+W+GLA+D SDDQQDITRGK
Sbjct: 30  FLGSRLKVSSRFTTSKMVTGNFKIVA---EQDEEKQTEKDKWRGLAFDTSDDQQDITRGK 86

Query: 457 GIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTM 573
           G+ D LFQAPMG GTH A+LSSYEYIS GLR Y +DN +
Sbjct: 87  GLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNV 125

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  107 bits (267), Expect = 2e-23
 Identities = 62/131 (47%), Positives = 81/131 (61%), Gaps = 17/131 (12%)
 Frame = +1

Query: 232 SAFSSTVGAPASTP--------------TIFLGKKVKNYYHGG---NKMKSRVVRVMAAK 360
           +A  ST+GA +  P              T F GK +K  Y  G    K+ +R +RV+A  
Sbjct: 2   AASVSTIGAASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVA-- 59

Query: 361 KELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQ 540
           +E+D+ K+   DRWKGL  + SDDQQDI RGKG+VDSLFQAP G GTH AI++SYEY+SQ
Sbjct: 60  QEVDETKE---DRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQ 116

Query: 541 GLRKYDFDNTM 573
            L+ Y  DN +
Sbjct: 117 ALKTYQLDNKL 127

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score = 92.4 bits (228), Expect = 8e-19
 Identities = 53/107 (49%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
 Frame = +1

Query: 256 APASTPTI-FLGKKVKNYYHGGNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDD 432
           A AS PT  FLG  +K + +      SR   +     E    ++ + D+W  LA D SDD
Sbjct: 23  AGASVPTSGFLGSSLKKHTNVRFPSSSRTTSMTVKAAE---NEEKNTDKWAHLAKDFSDD 79

Query: 433 QQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTM 573
           Q DI RGKG+VDSLFQAP   GTH  I SS+EY SQGLRKYD DN +
Sbjct: 80  QLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNML 126

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
 Frame = +1

Query: 313 GGNKMKSRVVRVMAAKKELDQGKQTDADRWKGL--AYDISDDQQDITRGKGIVDSLFQAP 486
           GG ++ +R VR   A+ ++    +    RW+ +    D SDDQQDITRG+ +VD LFQ  
Sbjct: 16  GGARVATRSVR--RAQLQVVAPSRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGG 73

Query: 487 MG-DGTHEAILSSYEYISQGLRKYD 558
            G  GTH A+LSS EY+SQ    ++
Sbjct: 74  FGAGGTHNAVLSSQEYLSQSRASFN 98

>MCM2_MOUSE (P97310) DNA replication licensing factor MCM2 (Minichromosome|
           maintenance protein 2 homolog) (Nuclear protein BM28)
          Length = 904

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = -2

Query: 444 DVLLVVRDVVGQTLPPVRIGLLALVKFLFGRHDPHHPA 331
           DVL VVRD    T+ PV+  +LA  +F+ G H  HHP+
Sbjct: 658 DVLCVVRD----TVDPVQDEMLA--RFVVGSHVRHHPS 689

>MCM2_HUMAN (P49736) DNA replication licensing factor MCM2 (Minichromosome|
           maintenance protein 2 homolog) (Nuclear protein BM28)
          Length = 904

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = -2

Query: 444 DVLLVVRDVVGQTLPPVRIGLLALVKFLFGRHDPHHPA 331
           D+L VVRD    T+ PV+  +LA  +F+ G H  HHP+
Sbjct: 658 DILCVVRD----TVDPVQDEMLA--RFVVGSHVRHHPS 689

>Y5626_BACAN (Q81JS3) Probable tautomerase BA5626/GBAA5626/BAS5226 (EC 5.3.2.-)|
          Length = 60

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +1

Query: 184 IKLSAARRERSINTMA----SAFSSTVGAPASTPTIFLGKKVKNYYHGGNKMKS 333
           +K+   R E     +A    +A S T GAP     +F+ +  KN+Y  G K  S
Sbjct: 5   VKMLEGRTEEQKKALAEKVTAAVSETTGAPEENIVVFIEEMSKNHYAVGGKRLS 58

>Y5378_BACCR (Q814P5) Probable tautomerase BC_5378 (EC 5.3.2.-)|
          Length = 60

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +1

Query: 184 IKLSAARRERSINTMA----SAFSSTVGAPASTPTIFLGKKVKNYYHGGNKMKS 333
           +K+   R E     +A    +A S T GAP     +F+ +  KN+Y  G K  S
Sbjct: 5   VKMLEGRTEEQKKALAEKVTAAVSETTGAPEENIVVFIEEMSKNHYAVGGKRLS 58


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,361,376
Number of Sequences: 219361
Number of extensions: 1376943
Number of successful extensions: 3943
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3939
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)