>NPP_HORVU (Q687E1) Nucleotide pyrophosphatase/phosphodiesterase (EC 3.-.-.-)|
           (Fragments)
          Length = 368

 Score = 79.0 bits (193), Expect = 1e-14
 Identities = 36/36 (100%), Positives = 36/36 (100%)
 Frame = +3

Query: 495 SDGSVVWAKPYTFRAPPTPGQNSLQRIIVFGDMGKA 602
           SDGSVVWAKPYTFRAPPTPGQNSLQRIIVFGDMGKA
Sbjct: 19  SDGSVVWAKPYTFRAPPTPGQNSLQRIIVFGDMGKA 54

>THIC_NEIMA (Q9JWF3) Thiamine biosynthesis protein thiC|
          Length = 633

 Score = 32.7 bits (73), Expect = 0.83
 Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 2/147 (1%)
 Frame = +3

Query: 36  IKYQYANYSANYLKGGKGSIRLQLINQRADFSFALFTGGLENPKLVSVSKKVMFKNPKAP 215
           I+++Y N    YL+G +  IR+ L   R D ++    G   NP +       ++ +P A 
Sbjct: 27  IRFKYPNSERVYLQGSRDDIRVPLREIRQDDTYTA-QGAEANPPIPVYDTSGVYGDPAAH 85

Query: 216 VFPRLAQGKTHDEMTVTWTSGYDVNEAYPFV--EWGMVGAAGTRTPAGTLTFNRGSMCGE 389
           +   L QG  H  +   W       E  P +  E+G+  A   +T    L FN+      
Sbjct: 86  I--DLKQGLPH--IRTVWLDERGDTEILPKLSSEYGIERAHDPKT--AHLRFNQ---ITR 136

Query: 390 PARTVGWRDPGFIHTAFMRNLWPNKEY 470
           P R    R+   +H A    + P  E+
Sbjct: 137 PRRAKAGRNVTQLHYARQGIITPEMEF 163

>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (mLark)
          Length = 361

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = -1

Query: 386 AAHAAAVEGQCPGGGARSGGADHAPLHERVGLVNVVAAGPGHGH 255
           AA AAA    C        G D +PL    G V  V  G G+GH
Sbjct: 283 AAAAAAAAAACTAASTSYYGRDRSPLRRATGPVLTVGEGYGYGH 326

>PPAF_PHAVU (P80366) Iron(III)-zinc(II) purple acid phosphatase (EC 3.1.3.2)|
           (PAP)
          Length = 432

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +3

Query: 420 GFIHTAFMRNLWPNKEYFYKIGHELSDGSVVWAKPYTFRAPPTPGQNSLQRIIVFGDMGK 599
           GFIH   +R L  N +Y+Y++G   +       + ++F  PP  G +      + GD+G+
Sbjct: 85  GFIHHTTIRKLKYNTKYYYEVGLRNT------TRRFSFITPPQTGLDVPYTFGLIGDLGQ 138

Query: 600 A 602
           +
Sbjct: 139 S 139

>PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase precursor (EC|
           3.1.3.2) (PAP)
          Length = 469

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +3

Query: 420 GFIHTAFMRNLWPNKEYFYKIGHELSDGSVVWAKPYTFRAPPTPGQNSLQRIIVFGDMGK 599
           G+IH   + +L  + +Y+Y+IG      S  W++ + F  PP  G +      + GD+G+
Sbjct: 118 GYIHHCLIDDLEFDTKYYYEIG------SGKWSRRFWFFIPPKSGPDVPYTFGLIGDLGQ 171

>ELN_MOUSE (P54320) Elastin precursor (Tropoelastin)|
          Length = 860

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = -1

Query: 503 SVGELVPDLVKVLFVG--PQVPHERSVDEPGISPSNSSCRLAAHAAAVEGQCPGGGARSG 330
           ++G LVP  V     G  P VP    V   G +P+ ++   AA AAA  G  PG G   G
Sbjct: 492 ALGGLVPGAVPGALPGAVPAVPGAGGVPGAG-TPAAAAAAAAAKAAAKAGLGPGVGGVPG 550

Query: 329 GADHAPLHERVGLVNVV-AAGPG 264
           G     +   VG+  V    GPG
Sbjct: 551 GVGVGGIPGGVGVGGVPGGVGPG 573

>UL56_HHV1E (P36297) Protein UL56|
          Length = 233

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 36/112 (32%), Positives = 42/112 (37%), Gaps = 19/112 (16%)
 Frame = -1

Query: 557 LPGGWRCPE---SVGLGPHHTSVG------ELVPDLVKVLFVGPQV-----PHERSVDEP 420
           L G W+ P      GL PH TS G         P L +     PQ      P  R    P
Sbjct: 104 LAGYWQPPSFFRKPGLWPHPTSQGTSCRASRCTPRLCRTT---PQPMPLSWPFVRPNSRP 160

Query: 419 GI-SPSNSSCRLAAHAAAVEGQ----CPGGGARSGGADHAPLHERVGLVNVV 279
           G+  P+ S  RL      + G     C G  A  G  DHAP + R G   VV
Sbjct: 161 GLWRPTTSDERLTRARGGLLGSIRASCTGPNAARGSYDHAP-YRREGCCGVV 211

>NIFA_AZOLI (P54929) Nif-specific regulatory protein|
          Length = 624

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 418 GSLHPTVRAGSPHMLPRLKVSVPAGVRVPAAPTMP 314
           G L P++  GS + +P  +  VPA    P AP MP
Sbjct: 466 GGLAPSMGPGSVNRVPPGRPGVPAPANAPKAPAMP 500

>PPAF_SOYBN (Q09131) Purple acid phosphatase precursor (EC 3.1.3.2)|
           (Manganese(II) purple acid phosphatase)
          Length = 464

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +3

Query: 420 GFIHTAFMRNLWPNKEYFYKIGHELSDGSVVWAKPYTFRAPPTPGQNSLQRIIVFGDMGK 599
           GFIH   +RNL    +Y+Y++G   +       + + F  PP  G +      + GD+G+
Sbjct: 112 GFIHHTTIRNLEYKTKYYYEVGLGNT------TRQFWFVTPPEIGPDVPYTFGLIGDLGQ 165

Query: 600 A 602
           +
Sbjct: 166 S 166

>SNIP_RAT (Q9QXY2) p130Cas-associated protein (p140Cap) (SNAP-25-interacting|
           protein) (SNIP)
          Length = 1197

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 458 GPQVPHERSVDEPGI-SPSNSSCRLAAHAAAVEGQCPGGGARSGGADHA 315
           GP  PH      P   SP   S R  + +++V  + PGG ARS GA  A
Sbjct: 521 GPPPPHSPYSGPPSRGSPVRQSFRKDSGSSSVFAESPGGKARSTGASTA 569

>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (hLark)
          Length = 364

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -1

Query: 410 PSNSSCRLAAHAAAVEGQCPGGGARSGGADHAPLHERVGLVNVVAAGPGHGH 255
           P++ +   AA AAA             G D +PL      V  V  G G+GH
Sbjct: 278 PTSGAAATAAAAAAAAAAVTAASTSYYGRDRSPLRRATAPVPTVGEGYGYGH 329

>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 4 (Hyperpolarization-activated
           cation channel 4) (HAC-4)
          Length = 1175

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
 Frame = -1

Query: 413 SPSNSSCRLAAHAAAVEGQCPGGGA--RSGGADHAPLHERVGLVNVVAAG---PGHGHLV 249
           S +N  CR    + A  G   GGG    +GG  H  LH+      ++A G   PG     
Sbjct: 93  SSTNGDCRRFRGSLASLGSRGGGGGGGSTGGGSHGHLHDSAEERRLIAEGDASPGEDRTP 152

Query: 248 VGLA 237
            GLA
Sbjct: 153 PGLA 156

>TCF20_HUMAN (Q9UGU0) Transcription factor 20 (Stromelysin 1 PDGF-responsive|
           element-binding protein) (SPRE-binding protein) (Nuclear
           factor SPBP) (AR1)
          Length = 1960

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
 Frame = -1

Query: 428 DEPGIS---PSNSSCRLAAHAAAVEGQCPGGGARSG--GADHAPLH--ERVGLVNVVAAG 270
           D+P  +   PSN   +  +HA+  + + PGGG   G    D+   H  E  G     AAG
Sbjct: 630 DDPAATQRPPSNGGAKETSHASLPQPEPPGGGGSKGNKNGDNNSNHNGEGNGQSGHSAAG 689

Query: 269 PG 264
           PG
Sbjct: 690 PG 691

>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)|
          Length = 2414

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 353 PGGGARSGGADHAPLHERVGLVNVVAAGPGHG 258
           PGGG  + G   AP  ++ GLV  VA G G G
Sbjct: 295 PGGGMPNMGQQPAPQVQQPGLVTPVAQGMGSG 326

>SREP_PENCH (Q92259) GATA factor SREP|
          Length = 532

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = -1

Query: 410 PSNSSCRLAAHAAAVEGQCPGGGARSG-----GADHAPLH 306
           P++S C  ++     +G CPGGG+ +G     G D  P +
Sbjct: 147 PASSHCGGSSEGGGCKGSCPGGGSCNGTGGAEGCDGCPAY 186

>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a)
          Length = 362

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -1

Query: 386 AAHAAAVEGQCPGGGARSGGADHAPLHERVGLVNVVAAGPGHGH 255
           AA AAA         +   G D +PL    G V  V  G G+GH
Sbjct: 284 AAAAAAAAAAVTAASSSYYGRDRSPLRRATGPVPTVGEGYGYGH 327

>HXB7_MOUSE (P09024) Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (MH-22B)|
          Length = 217

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 419 GISPSNSSCRLAAHAAAVEGQCPGGGARSGGA 324
           G+ PS+ +   A     + G CPG  A++GGA
Sbjct: 79  GLEPSSFNMHCAPFEQNLSGVCPGDAAKAGGA 110

>TLE1_MOUSE (Q62440) Transducin-like enhancer protein 1 (Groucho-related|
           protein 1) (Grg-1)
          Length = 770

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 455 PQVPHERSVDEPGISPSNSSCRLAAHAAAVEGQ 357
           P  PH   +  PGI P   S  L A ++A+ GQ
Sbjct: 142 PLTPHPSGLQPPGIPPLGGSASLLALSSALSGQ 174

>VG45_ICHV1 (Q00111) Hypothetical gene 45 protein|
          Length = 240

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 2/125 (1%)
 Frame = +3

Query: 195 FKNPKAPVFPRLAQGKTHDEMTVTWTSGYDVNEAYPFVEWGMVGAAGTRTPAGTLTFNRG 374
           F+N   P+   ++     D     WT         P   WG++ A      A  +   + 
Sbjct: 5   FQNEWNPILSDISDSIV-DRTAAQWT---------PATYWGLLEA-----DARAIRPVQQ 49

Query: 375 SMCGEPARTVGWRDP--GFIHTAFMRNLWPNKEYFYKIGHELSDGSVVWAKPYTFRAPPT 548
            +C  P  +  W  P  G++ T F+  +     Y        + GS  W +P T  APP 
Sbjct: 50  YVCNGPCCSTLWAGPVPGYVITQFVPPVTYPNPYRVVAAPGCAPGSE-WCEPPTVSAPPP 108

Query: 549 PGQNS 563
           P Q S
Sbjct: 109 PSQFS 113

>HISZ_ANASP (Q8YT12) ATP phosphoribosyltransferase regulatory subunit|
          Length = 404

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
 Frame = -1

Query: 590 VTEDDDTLQRVLPGGWRCPESVGL----GPHHTSVGEL--VPDLVKVLFVGPQVPHERSV 429
           +  + D+  RVL  G R  + +GL    G +   +G +  + DL +VL    Q+P E   
Sbjct: 273 IVNNTDSQARVLGRGGRYDQLLGLYHPQGENIPGIGFVLNIEDLYQVLLSTQQLPQETPA 332

Query: 428 DEPGISPSNSSCRLAAHAAA 369
            +  + P N +   AA A A
Sbjct: 333 SDWLVVPENPAAHSAAFAYA 352


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.127    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,470,167
Number of Sequences: 219361
Number of extensions: 1729341
Number of successful extensions: 6866
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 6523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6852
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)