ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63h15 |
|---|---|
| Clone Library Name | barley_pub |
>AKR2_ARATH (Q9SAR5) Ankyrin repeat domain-containing protein 2 (AtAKR2)| Length = 342 Score = 199 bits (507), Expect = 4e-51 Identities = 97/173 (56%), Positives = 130/173 (75%), Gaps = 8/173 (4%) Frame = +1 Query: 118 ASDQNEGSKSE---GLAAGAGLP----SPFDFSNMSSLLNDPSIREMAEQIASDPVFNQM 276 ++++N+ SK E G + + +P + FDFSNM+S+LNDPSIREMAEQIA DP FNQ+ Sbjct: 18 STEENKSSKPESASGSSTSSAMPGLNFNAFDFSNMASILNDPSIREMAEQIAKDPAFNQL 77 Query: 277 AEQLQKSAQGTGEQG-VPSLDPQAYLETMTKVMQNPQFMSMAERLGNSLMQDPAMSSMLE 453 AEQLQ+S G++G P+ DPQ Y+ TM +VM NP+F +MAE+LG +L+QDP MS L+ Sbjct: 78 AEQLQRSIPNAGQEGGFPNFDPQQYVNTMQQVMHNPEFKTMAEKLGTALVQDPQMSPFLD 137 Query: 454 NLTSPAHKEQLEERMTRIKDDPSLKPILDEIERGGPSAMVKYWNDPEILQKIG 612 ++P E ERM R+K+DP LKPILDEI+ GGPSAM+KYWNDPE+L+K+G Sbjct: 138 AFSNPETAEHFTERMARMKEDPELKPILDEIDAGGPSAMMKYWNDPEVLKKLG 190
>SRP54_CANAL (O42816) Signal recognition particle 54 kDa protein homolog| Length = 556 Score = 33.1 bits (74), Expect = 0.66 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%) Frame = +1 Query: 208 LLNDPSIREMAEQIASDPVFNQMAEQLQKSAQGTGEQGVPSL-----DPQAYLETMTKVM 372 + N+P ++ M +Q S+P F Q A + A G G G L +P + + Sbjct: 466 MANNPQMQRMMQQAQSNPNFMQQAMNMLGGA-GGGAGGAGGLAGMMNNPAMMQQAQQMMR 524 Query: 373 QNPQFMSMAERLGNSLMQDPAM 438 NPQ M A++ +M++P M Sbjct: 525 SNPQMMQQAQQ----MMKNPGM 542
>KCY_MYCGA (Q7NBV1) Cytidylate kinase (EC 2.7.4.14) (CK) (Cytidine| monophosphate kinase) (CMP kinase) Length = 226 Score = 33.1 bits (74), Expect = 0.66 Identities = 16/33 (48%), Positives = 21/33 (63%) Frame = +1 Query: 196 NMSSLLNDPSIREMAEQIASDPVFNQMAEQLQK 294 N+S LLNDP+I + A +IA DP A LQ+ Sbjct: 83 NISQLLNDPTISKGASEIAQDPKIRAYALSLQQ 115
>NGAP_HUMAN (Q9UJF2) Ras GTPase-activating protein nGAP (RAS protein| activator-like 1) Length = 1139 Score = 33.1 bits (74), Expect = 0.66 Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 7/124 (5%) Frame = +1 Query: 163 GAGLPSPFDFSNMSSLLNDPSIREMAEQIASDPVFNQMAEQLQKSAQGTGEQGVPSLDPQ 342 GA +P + +SL + S+ ++ + ++PV N + Q S+ + E VP + + Sbjct: 879 GARAKAPPSLPHSASLRSTGSMSVVSAALVAEPVQNGSRSRQQSSS--SRESPVPKV--R 934 Query: 343 AYLETMTKVMQNP---QFMSMAERLG----NSLMQDPAMSSMLENLTSPAHKEQLEERMT 501 A T+ +Q+P MS ER N+ + + +NL H E+ E+ +T Sbjct: 935 AIQRQQTQQVQSPVDSATMSPVERTAAWVLNNGQYEEDVEETEQNLDEAKHAEKYEQEIT 994 Query: 502 RIKD 513 ++K+ Sbjct: 995 KLKE 998
>NHR41_CAEEL (Q9N4B8) Nuclear hormone receptor family member nhr-41| Length = 615 Score = 32.3 bits (72), Expect = 1.1 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Frame = +1 Query: 175 PSPFDFSNMSSLLNDPSIREMAEQIASDPVFNQMAEQLQKSAQGTGEQGV-PSLDPQAYL 351 P P DFS SL+ +I++ + I S P + Q + T G+ P+L A + Sbjct: 14 PPPIDFSR--SLIAPTAIKQESHLIPSTPGTPTAFQPPQHA--NTPIPGIQPNLFNPAIM 69 Query: 352 ETMTKVMQNPQFMSMAERLGNSLMQDPAM 438 V NPQ M+M + N L+ P++ Sbjct: 70 AAQLNVFSNPQLMAMMQATRNPLLGHPSV 98
>WDHD1_HUMAN (O75717) WD repeat and HMG-box DNA-binding protein 1 (Acidic| nucleoplasmic DNA-binding protein 1) (And-1) Length = 1129 Score = 32.0 bits (71), Expect = 1.5 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Frame = +1 Query: 190 FSNMSSLLNDPSIREMAEQIASDP--VFNQMAEQLQKSAQGTGEQGVPSLDPQAYLETMT 363 +SN ++ + P R E+ A D ++ ++ K Q + + S D A +T Sbjct: 845 YSNTATEWSQPRFRNQVEEDAEDSGEADDEEKPEIHKPGQNSFSKSTNSSDVSAKSGAVT 904 Query: 364 KVMQ---NPQFMSMAERLGNSLMQDPAMSSMLENLTSPAHKEQLEERMTRIKDDPSLKPI 534 Q NP +S + + M +++L+N+ + K R T + P +KP+ Sbjct: 905 FSSQGRVNPFKVSASSKEPAMSMNSARSTNILDNMGKSSKKSTALSRTTNNEKSPIIKPL 964 Query: 535 L 537 + Sbjct: 965 I 965
>SGT2_YEAST (Q12118) Small glutamine-rich tetratricopeptide repeat-containing| protein 2 (Viral protein U-binding protein) (SGT/UBP) Length = 346 Score = 32.0 bits (71), Expect = 1.5 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = +1 Query: 115 MASDQNEGSKSEGLAAGAGLPSPFDFSNMSSLLNDPSIREMA 240 M D + +EG A+G G P N+S L+N+P++R MA Sbjct: 289 MMQDPSIRQMAEGFASGGGTP------NLSDLMNNPALRNMA 324 Score = 29.6 bits (65), Expect = 7.2 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +1 Query: 157 AAGAGLPSPFDFSNMSSLLNDPSIREMAEQIAS 255 AA + +P N+ ++ DPSIR+MAE AS Sbjct: 272 AAQKMMSNPGAMQNIQKMMQDPSIRQMAEGFAS 304
>CUTL1_MOUSE (P53564) Homeobox protein cut-like 1 (CCAAT displacement protein)| (CDP) (Homeobox protein Cux) Length = 1515 Score = 31.2 bits (69), Expect = 2.5 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 3/94 (3%) Frame = +1 Query: 316 QGVPSLDPQAYLETMTKVMQNPQFMSMAERLGNSLMQDPAMSSML---ENLTSPAHKEQL 486 Q VP+LDP + V++ + +E + S +DP S + NLTS + Sbjct: 787 QDVPTLDPPGSADAAQGVLRPMK----SELVRGSTWKDPWWSPIQPERRNLTSSEETKAD 842 Query: 487 EERMTRIKDDPSLKPILDEIERGGPSAMVKYWND 588 E + + S +P + + GPSA +YW + Sbjct: 843 ETTASGKERAGSSQPRAERSQLQGPSASAEYWKE 876
>HRPZ_PSEAP (O87653) Harpin hrpZ (HrpZ-Psa protein) (Harpin-Psa)| Length = 342 Score = 30.4 bits (67), Expect = 4.2 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = +1 Query: 130 NEGSKSEGLAA-GAGLPSPFDFSNMSSLLNDPSI 228 N+ S + GLA G GL +P FSN SS+ DP I Sbjct: 199 NQQSDAGGLAGTGGGLGTPSSFSNNSSVTGDPLI 232
>UL48_HCMVA (P16785) Probable large tegument protein| Length = 2241 Score = 30.4 bits (67), Expect = 4.2 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Frame = +1 Query: 382 QFMSMAERLGNSLMQDPAMSSMLENLTSPAHKEQLEERMTRIKDD---PSLKPILDE 543 Q +ERL SL QDP SS+ P ++L R+T D P K +LD+ Sbjct: 1186 QMTETSERLDRSLRQDPGSSSVTRVPEKPFKGQELAGRITPPPADFQQPVFKTLLDQ 1242
>SFR11_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Arginine-rich 54| kDa nuclear protein) (p54) Length = 484 Score = 30.4 bits (67), Expect = 4.2 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%) Frame = +1 Query: 319 GVPSLDPQAYLETMTKVMQNPQFMSMAERLGNSLMQDPAMSSMLENLTSPAHK-----EQ 483 G P+LDP + N Q ++ + L DP ++ + L SP+ K ++ Sbjct: 159 GAPTLDPALAALGLPGANLNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKE 218 Query: 484 LEERMTRIKDDPSL 525 +EE M R+++ SL Sbjct: 219 IEEAMKRVREAQSL 232
>AMPA_PHOLL (Q7MZ27) Probable cytosol aminopeptidase (EC 3.4.11.1) (Leucine| aminopeptidase) (LAP) (Leucyl aminopeptidase) Length = 506 Score = 30.0 bits (66), Expect = 5.6 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 1/96 (1%) Frame = +1 Query: 133 EGSKSEGLAAGAGLPSPFDFSNM-SSLLNDPSIREMAEQIASDPVFNQMAEQLQKSAQGT 309 E + GLA AG+ + D SNM ++ N + A Q+A + + + Sbjct: 171 ERAIQHGLAIAAGIKAAKDLSNMPPNICNAAYLASQARQLAD-------SANSHITTKVI 223 Query: 310 GEQGVPSLDPQAYLETMTKVMQNPQFMSMAERLGNS 417 GE+ + L AYL + + QN MS+ E G+S Sbjct: 224 GEEQMKELGMNAYL-AVGQGSQNESLMSVMEYKGSS 258
>KIF17_MOUSE (Q99PW8) Kinesin-like protein KIF17 (MmKIF17)| Length = 1038 Score = 30.0 bits (66), Expect = 5.6 Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 3/140 (2%) Frame = +1 Query: 106 RSAMASDQNEGSKSEGLAAGAGLPSPFDFSNMSSLLNDPSIREMAEQIASDPVFNQMAEQ 285 RS + + NE S E A P P +FSNM + + + + + + Q A Sbjct: 532 RSEFSFESNECSTLEDSATSEAFPGPEEFSNME--FSMAAALTESRYLPEEYLGGQEAAA 589 Query: 286 LQKSAQGTGEQGVPSLDPQAYLETMTKVMQNP--QFMSMAERLGNSL-MQDPAMSSMLEN 456 A+ ++ PSL+P L + +Q+P + + RL +++ M D + + + + Sbjct: 590 SPLEAERYVQENEPSLEPLRILAS----LQDPFAEVEAKLARLSSTVAMSDSSQTVVPQI 645 Query: 457 LTSPAHKEQLEERMTRIKDD 516 P+ + LE T+ + D Sbjct: 646 PKQPSSADLLEPSDTKSEAD 665
>SCA4_RICFE (Q9AJ37) Antigenic heat-stable 120 kDa protein (PS120) (120 kDa| antigen) (Protein PS 120) Length = 1039 Score = 30.0 bits (66), Expect = 5.6 Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 2/127 (1%) Frame = +1 Query: 184 FDFSNMSSLLNDPSIREMAEQIASDPVFNQMAEQLQKSAQGTGEQGVPSLDPQAYLETMT 363 F F+ SS + PSI ++ I+SD +Q ++ + K+ + T Q P D A E + Sbjct: 85 FSFTPASSTQSTPSISSLSGGISSD---SQTSDPITKAVRETIIQ--PQKDEIA--EQIL 137 Query: 364 KVMQNPQFMSMAERLGNSLMQ--DPAMSSMLENLTSPAHKEQLEERMTRIKDDPSLKPIL 537 K + +AE+ + + D +S+ N PA++E +++ + ++P LK L Sbjct: 138 KDLAALADRDLAEQKRKEIEEEKDKTLSAFFGN---PANREFIDKAL----ENPELKKKL 190 Query: 538 DEIERGG 558 + IE G Sbjct: 191 ESIEIAG 197
>PO6F2_HUMAN (P78424) POU domain, class 6, transcription factor 2| (Retina-derived POU-domain factor 1) (RPF-1) Length = 684 Score = 29.6 bits (65), Expect = 7.2 Identities = 29/104 (27%), Positives = 36/104 (34%), Gaps = 6/104 (5%) Frame = +1 Query: 163 GAGLPSPFDFSNMSSLLNDPSIREMA------EQIASDPVFNQMAEQLQKSAQGTGEQGV 324 G GLPSP N L+N+P + A IAS F LQ G G Sbjct: 274 GHGLPSPLTPPNPLQLVNNPLASQAAAAAAAMSSIASSQAFGNALSSLQ------GVTGQ 327 Query: 325 PSLDPQAYLETMTKVMQNPQFMSMAERLGNSLMQDPAMSSMLEN 456 + Q + +M NP S A L P +L N Sbjct: 328 LVTNAQGQIIGTIPLMPNPGPSSQAASGTQGLQVQPITPQLLTN 371
>AKAP2_HUMAN (Q9Y2D5) A-kinase anchor protein 2 (Protein kinase A-anchoring| protein 2) (PRKA2) (AKAP-2) Length = 1103 Score = 29.6 bits (65), Expect = 7.2 Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 9/134 (6%) Frame = +1 Query: 121 SDQNEGSKSEGLA---AGAGLPSPFDFSNMSSLLNDPSIREMAEQIASDPVFNQMAEQLQ 291 +D + EG++ + G SP S L++DP + A + + + +AEQ+ Sbjct: 760 TDNPSEGRGEGVSKSFSDHGFYSPSSTLGDSPLVDDP-LEYQAGLLVQNAIQQAIAEQVD 818 Query: 292 KSAQGTGEQGVPSLDPQAYLETMTKVMQNPQFMSMAERLGNSLMQDPAMSSMLENLTS-- 465 K+ T G P+A +E + + S+ + P +SS ++ Sbjct: 819 KAVSKTSRDGAEQQGPEATVE-------EAEAAAFGSEKPQSMFEPPQVSSPVQEKRDVL 871 Query: 466 ----PAHKEQLEER 495 PA L ER Sbjct: 872 PKILPAEDRALRER 885
>SGTA_HUMAN (O43765) Small glutamine-rich tetratricopeptide repeat-containing| protein A (Vpu-binding protein) (UBP) Length = 313 Score = 29.6 bits (65), Expect = 7.2 Identities = 27/109 (24%), Positives = 46/109 (42%) Frame = +1 Query: 283 QLQKSAQGTGEQGVPSLDPQAYLETMTKVMQNPQFMSMAERLGNSLMQDPAMSSMLENLT 462 +L+++ TG GV S D + ++ NP FMSMA L N+ MS M+ Sbjct: 205 KLREAPSPTG--GVGSFD-------IAGLLNNPGFMSMASNLMNNPQIQQLMSGMISGGN 255 Query: 463 SPAHKEQLEERMTRIKDDPSLKPILDEIERGGPSAMVKYWNDPEILQKI 609 +P + PS + I+ G A +PE+++++ Sbjct: 256 NP---------LGTPGTSPSQNDLASLIQAGQQFAQQMQQQNPELIEQL 295
>GATB_SULSO (Q980Q3) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B| (EC 6.3.5.-) (Asp/Glu-ADT subunit B) Length = 472 Score = 29.6 bits (65), Expect = 7.2 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Frame = +1 Query: 355 TMTKVMQNPQFMSMAERLGNSLMQDPAMSSMLEN--LTSPAHKEQLEER-MTRIKDDPSL 525 T +K N + + E L + L+ + +L LT + ++E+ MT IKD+ L Sbjct: 358 TQSKAKAN-HIIELFEYLDSGLISIKIVKELLPEMILTGKTPGQLIKEKGMTNIKDENYL 416 Query: 526 KPILDEIERGGPSAMVKYWNDPEIL 600 + I+DE+ A+ K DP+++ Sbjct: 417 ERIIDEVLNEEKEAVEKAKRDPKVV 441
>PAM17_ASPFU (Q4WKN3) Presequence translocated-associated motor subunit pam17,| mitochondrial precursor Length = 247 Score = 29.3 bits (64), Expect = 9.5 Identities = 13/54 (24%), Positives = 26/54 (48%) Frame = +1 Query: 193 SNMSSLLNDPSIREMAEQIASDPVFNQMAEQLQKSAQGTGEQGVPSLDPQAYLE 354 ++ + +L PS+R + P+F + A +L +A VP LD ++ + Sbjct: 51 TSTTRILLKPSLRPQTSSMCLSPIFRKTAFRLNSTAANASRAEVPKLDWNSFFK 104
>STIP1_MOUSE (Q60864) Stress-induced-phosphoprotein 1 (STI1)| (Hsc70/Hsp90-organizing protein) (Hop) (mSTI1) Length = 543 Score = 29.3 bits (64), Expect = 9.5 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = +1 Query: 178 SPFDFSNM-SSLLNDPSIREMAEQIASDPVFNQMAEQLQKSAQGTG 312 +PF+ N+ L NDP R + SDP + ++ EQLQ G Sbjct: 126 NPFNLPNLYQKLENDPRTRSLL----SDPTYRELIEQLQNKPSDLG 167
>RP54_BRAJA (P30332) RNA polymerase sigma-54 factor 1| Length = 484 Score = 29.3 bits (64), Expect = 9.5 Identities = 15/51 (29%), Positives = 27/51 (52%) Frame = +1 Query: 427 DPAMSSMLENLTSPAHKEQLEERMTRIKDDPSLKPILDEIERGGPSAMVKY 579 DPAM +++E+L A ++ R DD + ++DE+ R P +K+ Sbjct: 201 DPAMQALVEHLDLLAKRDIASLRKLCGVDDEDIADMIDELRRLSPKPGMKF 251
>HRPZ_PSESY (P35674) Harpin hrpZ (HrpZ-Pss protein) (Harpin-Pss)| Length = 341 Score = 29.3 bits (64), Expect = 9.5 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = +1 Query: 130 NEGSKSEGLAA-GAGLPSPFDFSNMSSLLNDPSI 228 N+ S + LA G GL +P FSN SS++ DP I Sbjct: 198 NQQSDAGSLAGTGGGLGTPSSFSNNSSVMGDPLI 231
>PRP45_KLULA (Q6CLJ7) Pre-mRNA-splicing factor PRP45 (Pre-mRNA-processing| protein 45) Length = 430 Score = 29.3 bits (64), Expect = 9.5 Identities = 10/38 (26%), Positives = 22/38 (57%) Frame = +1 Query: 478 EQLEERMTRIKDDPSLKPILDEIERGGPSAMVKYWNDP 591 E+++ + DDPS+KP +E+++ + + W +P Sbjct: 147 EEIQAPILHKSDDPSIKPTKEELDKWRIPSAISNWKNP 184
>ELK4_MOUSE (P41158) ETS domain-containing protein Elk-4 (Serum response factor| accessory protein 1) (SAP-1) Length = 430 Score = 29.3 bits (64), Expect = 9.5 Identities = 17/60 (28%), Positives = 31/60 (51%) Frame = +1 Query: 364 KVMQNPQFMSMAERLGNSLMQDPAMSSMLENLTSPAHKEQLEERMTRIKDDPSLKPILDE 543 K+ ++ + + AE+L Q+P S+++ +T+PA K +E PSL P +E Sbjct: 160 KLFKSIKIENPAEKLAEKKAQEPT-PSVIKFVTTPAKKPPIEPVAAACATSPSLSPSSEE 218 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.128 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,650,044 Number of Sequences: 219361 Number of extensions: 1767245 Number of successful extensions: 4194 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4089 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4189 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
