ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63h08 |
|---|---|
| Clone Library Name | barley_pub |
>CSTN2_HUMAN (Q9H4D0) Calsyntenin-2 precursor| Length = 955 Score = 31.6 bits (70), Expect = 1.8 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 9/83 (10%) Frame = -3 Query: 237 GQGCRAEATAARSPSRWDGAQCS--------STSDGWCLGVLVRSHSCSFLW-GLARSPP 85 G+GC E + +S + GA S + W G+LV S F + G + Sbjct: 307 GKGCDRETYSEKSLQKLCGASSGIIDLLPSPSAATNWTAGLLVDSSEMIFKFDGRQGAKI 366 Query: 84 PPGVLPLNGAAQLCTLQWEGGGP 16 P G++P N Q W GP Sbjct: 367 PDGIVPKNLTDQFTITMWMKHGP 389
>CSTN2_RAT (Q8VDA1) Calsyntenin-2 precursor| Length = 965 Score = 31.6 bits (70), Expect = 1.8 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 9/83 (10%) Frame = -3 Query: 237 GQGCRAEATAARSPSRWDGAQCS--------STSDGWCLGVLVRSHSCSFLW-GLARSPP 85 G+GC E + +S + GA S + W G+LV S F + G + Sbjct: 309 GKGCDRETYSEKSLQKLCGASSGIIDLLPSPSAATNWTAGLLVDSSEMIFKFDGRQGAKI 368 Query: 84 PPGVLPLNGAAQLCTLQWEGGGP 16 P G++P N Q W GP Sbjct: 369 PDGIVPKNLTDQFTITMWMKHGP 391
>CSTN2_MOUSE (Q9ER65) Calsyntenin-2 precursor| Length = 966 Score = 31.6 bits (70), Expect = 1.8 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 9/83 (10%) Frame = -3 Query: 237 GQGCRAEATAARSPSRWDGAQCS--------STSDGWCLGVLVRSHSCSFLW-GLARSPP 85 G+GC E + +S + GA S + W G+LV S F + G + Sbjct: 309 GKGCDRETYSEKSLQKLCGASSGIIDLLPSPSAATNWTAGLLVDSSEMIFKFDGRQGAKI 368 Query: 84 PPGVLPLNGAAQLCTLQWEGGGP 16 P G++P N Q W GP Sbjct: 369 PDGIVPKNLTDQFTITMWMKHGP 391
>HCN2_HUMAN (Q9UL51) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 (Brain cyclic nucleotide gated channel 2) (BCNG-2) Length = 889 Score = 30.8 bits (68), Expect = 3.1 Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 4/95 (4%) Frame = +2 Query: 5 AAAFGPPPSHWSVQSWAAPFKGRTPGGGG----DRAKPQRKEQE*ERTNTPKHHPSLVLL 172 AA+ GPPP + A+P RT GG A P + R + P L Sbjct: 769 AASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSRASRPLSASQPSLP 828 Query: 173 HCAPSQREGDRAAVASALQPCPFSACLSAAPSRPR 277 H AP R A +S + P A +AAPS R Sbjct: 829 HGAPGPAASTRPASSSTPRLRPTPAARAAAPSPDR 863
>UL62_HCMVA (P16819) Hypothetical protein UL62| Length = 217 Score = 30.4 bits (67), Expect = 4.1 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%) Frame = -3 Query: 312 CRLHFLRPS--VGPRGREGAADRQAEKGQGCRAEATAARSPSRWDG 181 CRL F RPS V G A + +KG C + + WDG Sbjct: 103 CRLDFFRPSAPVSVHGFSTAKSEKGKKGGACSLPGSRTSRHAGWDG 148
>MET_CALMO (Q2QLC0) Hepatocyte growth factor receptor precursor (EC 2.7.10.1)| (HGF receptor) (Scatter factor receptor) (SF receptor) (HGF/SF receptor) (Met proto-oncogene tyrosine kinase) (c-Met) Length = 1381 Score = 30.4 bits (67), Expect = 4.1 Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 6/78 (7%) Frame = -3 Query: 237 GQGCRAEATAARSPSRWDGAQCSSTSDGWCLGVLVRSHSCSF-LWGLARSPPP-----PG 76 G GCR + ++ S QC GWC VRS CS W P P Sbjct: 517 GLGCRHFQSCSQCLSAPSFVQC-----GWCHDKCVRSEECSSGTWTQETCLPAIYKVFPT 571 Query: 75 VLPLNGAAQLCTLQWEGG 22 PL G +L W+ G Sbjct: 572 SAPLEGGTRLTICGWDFG 589
>MET_CALJA (Q2QLG5) Hepatocyte growth factor receptor precursor (EC 2.7.10.1)| (HGF receptor) (Scatter factor receptor) (SF receptor) (HGF/SF receptor) (Met proto-oncogene tyrosine kinase) (c-Met) Length = 1381 Score = 30.4 bits (67), Expect = 4.1 Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 6/78 (7%) Frame = -3 Query: 237 GQGCRAEATAARSPSRWDGAQCSSTSDGWCLGVLVRSHSCSF-LWGLARSPPP-----PG 76 G GCR + ++ S QC GWC VRS CS W P P Sbjct: 517 GLGCRHFQSCSQCLSAPSFVQC-----GWCHDKCVRSEECSSGTWTQETCLPTIYKVFPT 571 Query: 75 VLPLNGAAQLCTLQWEGG 22 PL G +L W+ G Sbjct: 572 SAPLEGGTRLTICGWDFG 589
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 30.0 bits (66), Expect = 5.3 Identities = 27/80 (33%), Positives = 33/80 (41%) Frame = -3 Query: 291 PSVGPRGREGAADRQAEKGQGCRAEATAARSPSRWDGAQCSSTSDGWCLGVLVRSHSCSF 112 P GP R A+ E G+ R EA AAR P R GA +G V H + Sbjct: 726 PVPGPGVRVRRAEAVGEGGEQ-RREAAAARVPGRARGA-LGGLGAELLVGQRVVEHHHAH 783 Query: 111 LWGLARSPPPPGVLPLNGAA 52 + G+ P P G GAA Sbjct: 784 VLGVGYLPHPGGAAAERGAA 803
>MUCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 831 Score = 30.0 bits (66), Expect = 5.3 Identities = 21/78 (26%), Positives = 33/78 (42%) Frame = +1 Query: 19 ASSFPLERTKLGGTI*RKNTXXXXXXXQTPKKGTRVRAHQHPQTPSIASAATLRSVPARG 198 ASS P LG + + T QTPK GT HP P+ ++ +L + +R Sbjct: 515 ASSIPGGSPTLGTSTSPQTTTPGGDSAQTPKPGT-----SHPTAPTSRTSTSLMTTSSRS 569 Query: 199 GSRRCCFCPAALPFLSLP 252 S + + P + +P Sbjct: 570 DSTQTPKPGTSQPMVPIP 587
>ESR1_OREAU (P50240) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 583 Score = 30.0 bits (66), Expect = 5.3 Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Frame = -3 Query: 474 AKE*MRKYAVVVRIC*HLHARQNLMLRLEPHEHLTKLR-KNA*FCYPTFFQI*EACRLHF 298 A++ R+ A ++ + H+ N + EHL ++ KN Y ++ +A R+H Sbjct: 451 AQQQSRRQAQLLLLLSHIRHMSNKGM-----EHLYSMKCKNKVPLYDLLLEMLDAHRIH- 504 Query: 297 LRPSVGPRGREGAADRQAEKGQGCRAEATAARSPSRWD--GAQCSSTSDGWCLGVLVRSH 124 RP V P DR + A +T++R D GA + +S G SH Sbjct: 505 -RP-VKPSQSWSQGDRDSPT-----ASSTSSRGGGGGDDEGASSAGSSSG-----PQGSH 552 Query: 123 SCSFLWGLARSPPPPGVLPLNGAAQLCT 40 L+R+P PGVL G+ CT Sbjct: 553 ESPRRENLSRAPKGPGVLQYRGSHSDCT 580
>MET_PONPY (Q2IBD8) Hepatocyte growth factor receptor precursor (EC 2.7.10.1)| (HGF receptor) (Scatter factor receptor) (SF receptor) (HGF/SF receptor) (Met proto-oncogene tyrosine kinase) (c-Met) Length = 1390 Score = 30.0 bits (66), Expect = 5.3 Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 6/78 (7%) Frame = -3 Query: 237 GQGCRAEATAARSPSRWDGAQCSSTSDGWCLGVLVRSHSCSF-LWGLARSPPP-----PG 76 G GCR + ++ S QC GWC VRS CS W P P Sbjct: 517 GLGCRHFQSCSQCLSAPPFVQC-----GWCHDKCVRSEECSSGTWTQQICLPAIYKVFPS 571 Query: 75 VLPLNGAAQLCTLQWEGG 22 PL G +L W+ G Sbjct: 572 SAPLEGGTRLTICGWDFG 589
>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 29.6 bits (65), Expect = 6.9 Identities = 27/93 (29%), Positives = 37/93 (39%) Frame = +2 Query: 20 PPPSHWSVQSWAAPFKGRTPGGGGDRAKPQRKEQE*ERTNTPKHHPSLVLLHCAPSQREG 199 PPPS + + A +G P D P+ E+ ++ + H L S G Sbjct: 30 PPPSPSAAAAGAPGARGSEPR---DPGSPRGSEEPGKKRHERLFHRQDALWISTSSAGTG 86 Query: 200 DRAAVASALQPCPFSACLSAAPSRPRGPTDGRR 298 A AL P P A+P+RP P GRR Sbjct: 87 --GAEPPALSPAP------ASPARPVSPAPGRR 111
>MET_PANTR (Q2QLF1) Hepatocyte growth factor receptor precursor (EC 2.7.10.1)| (HGF receptor) (Scatter factor receptor) (SF receptor) (HGF/SF receptor) (Met proto-oncogene tyrosine kinase) (c-Met) Length = 1390 Score = 29.6 bits (65), Expect = 6.9 Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 6/78 (7%) Frame = -3 Query: 237 GQGCRAEATAARSPSRWDGAQCSSTSDGWCLGVLVRSHSC-SFLWGLARSPPP-----PG 76 G GCR + ++ S QC GWC VRS C S W P P Sbjct: 517 GLGCRHFQSCSQCLSAPPFVQC-----GWCHDKCVRSEECLSGTWTQQICLPAIYKVFPN 571 Query: 75 VLPLNGAAQLCTLQWEGG 22 PL G +L W+ G Sbjct: 572 SAPLEGGTRLTICGWDFG 589
>MET_HUMAN (P08581) Hepatocyte growth factor receptor precursor (EC 2.7.10.1)| (HGF receptor) (Scatter factor receptor) (SF receptor) (HGF/SF receptor) (Met proto-oncogene tyrosine kinase) (c-Met) Length = 1390 Score = 29.6 bits (65), Expect = 6.9 Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 6/78 (7%) Frame = -3 Query: 237 GQGCRAEATAARSPSRWDGAQCSSTSDGWCLGVLVRSHSC-SFLWGLARSPPP-----PG 76 G GCR + ++ S QC GWC VRS C S W P P Sbjct: 517 GLGCRHFQSCSQCLSAPPFVQC-----GWCHDKCVRSEECLSGTWTQQICLPAIYKVFPN 571 Query: 75 VLPLNGAAQLCTLQWEGG 22 PL G +L W+ G Sbjct: 572 SAPLEGGTRLTICGWDFG 589
>TXLNA_MOUSE (Q6PAM1) Alpha-taxilin| Length = 554 Score = 29.6 bits (65), Expect = 6.9 Identities = 13/46 (28%), Positives = 22/46 (47%) Frame = -3 Query: 291 PSVGPRGREGAADRQAEKGQGCRAEATAARSPSRWDGAQCSSTSDG 154 P G EGA R + G AE + +++P + +GA+ + G Sbjct: 20 PGQREAGPEGAHGRPRQTAPGAEAEGSTSQAPGKTEGARAKAAQPG 65
>VSG4_TRYBR (P02897) Variant surface glycoprotein 4 precursor (VSG 4)| (Metacyclic variable antigen) (Fragment) Length = 476 Score = 29.3 bits (64), Expect = 9.1 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = -3 Query: 267 EGAADRQAEKGQGCRAEATAARSPS-RWDGAQCSSTS 160 EGAAD++ EK +G + E ++P +W+G C +S Sbjct: 424 EGAADKKEEKCKG-KLEPECTKAPECKWEGETCKDSS 459
>SEM3D_BRARE (Q9W6G6) Semaphorin-3D precursor (Semaphorin-2) (Semaphorin Z2)| (Sema-Z2) Length = 764 Score = 29.3 bits (64), Expect = 9.1 Identities = 15/24 (62%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Frame = -3 Query: 237 GQGCRAEATAARSP-SRWDGAQCS 169 GQGC AE AR P WDG QCS Sbjct: 542 GQGC-AECCLARDPYCAWDGTQCS 564 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,612,291 Number of Sequences: 219361 Number of extensions: 1989270 Number of successful extensions: 6233 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5701 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6221 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
