ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63h06 |
|---|---|
| Clone Library Name | barley_pub |
>RBCMT_ARATH (Q9XI84) Probable ribulose-1,5 bisphosphate carboxylase/oxygenase| large subunit N-methyltransferase, chloroplast precursor (EC 2.1.1.127) ([Ribulose-bisphosphate carboxylase]-lysine N-methyltransferase) (RuBisCO methyltransferase) (RuBisco LS Length = 482 Score = 255 bits (651), Expect = 8e-68 Identities = 122/186 (65%), Positives = 150/186 (80%) Frame = +1 Query: 1 GDKLALIPFADLINHNGDITSKESCWEIKGKGFLGRDTVFSLRTPVDVKSGEQIYVQYDL 180 G L LIP ADLINHN I +++ +EIKG G RD +FSL++PV VK+GEQ+Y+QYDL Sbjct: 224 GQNLVLIPLADLINHNPAIKTEDYAYEIKGAGLFSRDLLFSLKSPVYVKAGEQVYIQYDL 283 Query: 181 DKSNAELALDYGFTESNSSRDSYTLTLEISESDPFYEDKLDIAELNGMGETAYFDVVLGE 360 +KSNAELALDYGF ESN R+SYTLT+EI ESDPF+ DKLDIAE N MGET YFD+V G+ Sbjct: 284 NKSNAELALDYGFVESNPKRNSYTLTIEIPESDPFFGDKLDIAESNKMGETGYFDIVDGQ 343 Query: 361 SLPPQMITYLRLLCLGGTDAFLLEALFRNKVWEHLELPVSRDNEESICQVIQNACKSALA 540 +LP M+ YLRL+ LGG DAFLLE++F N +W HLELPVSR NEE IC+V+++ACKSAL+ Sbjct: 344 TLPAGMLQYLRLVALGGPDAFLLESIFNNTIWGHLELPVSRTNEELICRVVRDACKSALS 403 Query: 541 AYHTTI 558 + TTI Sbjct: 404 GFDTTI 409
>RBCMT_TOBAC (P94026) Ribulose-1,5 bisphosphate carboxylase/oxygenase large| subunit N-methyltransferase, chloroplast precursor (EC 2.1.1.127) ([Ribulose-bisphosphate carboxylase]-lysine N-methyltransferase) (RuBisCO methyltransferase) (RuBisco LSMT) (rbcM Length = 491 Score = 253 bits (647), Expect = 2e-67 Identities = 119/184 (64%), Positives = 154/184 (83%), Gaps = 1/184 (0%) Frame = +1 Query: 10 LALIPFADLINHNGDITSKESCWEIKGK-GFLGRDTVFSLRTPVDVKSGEQIYVQYDLDK 186 L L+PFADL NHN +T+++ E++G G D +FSLR+P+ +K+G+Q+++QYDL+K Sbjct: 235 LILVPFADLTNHNARVTTEDHAHEVRGPAGLFSWDLLFSLRSPLKLKAGDQLFIQYDLNK 294 Query: 187 SNAELALDYGFTESNSSRDSYTLTLEISESDPFYEDKLDIAELNGMGETAYFDVVLGESL 366 SNA++ALDYGF E +S+RD++TLTLEISESD FY DKLDIAE NG+GETAYFD+ +G+SL Sbjct: 295 SNADMALDYGFIEPSSARDAFTLTLEISESDEFYGDKLDIAETNGIGETAYFDIKIGQSL 354 Query: 367 PPQMITYLRLLCLGGTDAFLLEALFRNKVWEHLELPVSRDNEESICQVIQNACKSALAAY 546 PP MI YLRL+ LGGTDAFLLE++FRN VW HL LPVSR NEE IC+V+++ACKSAL+ Y Sbjct: 355 PPTMIPYLRLVALGGTDAFLLESIFRNSVWGHLGLPVSRANEELICKVVRDACKSALSGY 414 Query: 547 HTTI 558 HTTI Sbjct: 415 HTTI 418
>RBCMT_PEA (Q43088) Ribulose-1,5 bisphosphate carboxylase/oxygenase large| subunit N-methyltransferase, chloroplast precursor (EC 2.1.1.127) ([Ribulose-bisphosphate carboxylase]-lysine N-methyltransferase) (RuBisCO methyltransferase) (RuBisco LSMT) (rbcMT) Length = 489 Score = 249 bits (635), Expect = 6e-66 Identities = 114/186 (61%), Positives = 150/186 (80%), Gaps = 1/186 (0%) Frame = +1 Query: 4 DKLALIPFADLINHNGDITSKESCWEIKGK-GFLGRDTVFSLRTPVDVKSGEQIYVQYDL 180 + L ++P ADLINH+ +T+++ +E+KG G D +FSL++P+ VK+GEQ+Y+QYDL Sbjct: 230 ENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDL 289 Query: 181 DKSNAELALDYGFTESNSSRDSYTLTLEISESDPFYEDKLDIAELNGMGETAYFDVVLGE 360 +KSNAELALDYGF E N +R +YTLTLEISESDPF++DKLD+AE NG +TAYFD+ Sbjct: 290 NKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNR 349 Query: 361 SLPPQMITYLRLLCLGGTDAFLLEALFRNKVWEHLELPVSRDNEESICQVIQNACKSALA 540 +LPP ++ YLRL+ LGGTDAFLLE+LFR+ +W HLEL VSRDNEE +C+ ++ ACKSALA Sbjct: 350 TLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALA 409 Query: 541 AYHTTI 558 YHTTI Sbjct: 410 GYHTTI 415
>SETD4_MOUSE (P58467) SET domain-containing protein 4| Length = 439 Score = 40.0 bits (92), Expect = 0.005 Identities = 43/193 (22%), Positives = 77/193 (39%), Gaps = 8/193 (4%) Frame = +1 Query: 4 DKLALIPFADLINHNGDITSKESCWEIKGKGFLGRDTVFSLRTPVDVKSGEQIYVQYDLD 183 D AL PF DL+NH+ + K + F + + +RT + +++++ Y Sbjct: 223 DTCALAPFLDLLNHSPHVQVKAA--------FNEKTRCYEIRTASRCRKHQEVFICYG-P 273 Query: 184 KSNAELALDYGFTESNSSRDSYTLTLE-----ISESDPFYEDKLDIAELNGMGETAYFDV 348 N L L+YGF + ++ + + +D K+ I + +G F Sbjct: 274 HDNQRLLLEYGFVSVRNPHACVPVSADMLVKFLPAADKQLHRKITILKDHGFTGNLTF-- 331 Query: 349 VLGESLPP-QMITYLRLLCLGGTDAFLLEALFRNKVWEHLEL--PVSRDNEESICQVIQN 519 G P +++T L+LLCL R W+ + L +S NE++ V Q Sbjct: 332 --GWDGPSWRLLTALKLLCLEAE---------RFTSWKKVLLGEVISDTNEKTSLGVAQK 380 Query: 520 ACKSALAAYHTTI 558 C + H + Sbjct: 381 ICSDVIEETHAVL 393
>SETD4_HUMAN (Q9NVD3) SET domain-containing protein 4| Length = 440 Score = 40.0 bits (92), Expect = 0.005 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 6/180 (3%) Frame = +1 Query: 4 DKLALIPFADLINHNGDITSKESCWEIKGKGFLGRDTVFSLRTPVDVKSGEQIYVQYDLD 183 D AL P+ DL+NH+ + K + F + +RT + E++++ Y Sbjct: 224 DTCALAPYLDLLNHSPHVQVKAA--------FNEETHSYEIRTTSRWRKHEEVFICYG-P 274 Query: 184 KSNAELALDYGFTESNSSRDSYTLTLEI-----SESDPFYEDKLDIAELNGMGETAYFDV 348 N L L+YGF ++ ++ EI +D + K+ I + +G E F Sbjct: 275 HDNQRLFLEYGFVSVHNPHACVYVSREILVKYLPSTDKQMDKKISILKDHGYIENLTF-- 332 Query: 349 VLGESLPP-QMITYLRLLCLGGTDAFLLEALFRNKVWEHLELPVSRDNEESICQVIQNAC 525 G P +++T L+LLCL + + +V +S NE++ + Q C Sbjct: 333 --GWDGPSWRLLTALKLLCLEAEKFTCWKKVLLGEV-------ISDTNEKTSLDIAQKIC 383
>YHD9_YEAST (P38732) Protein YHL039W| Length = 585 Score = 39.3 bits (90), Expect = 0.009 Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 8/136 (5%) Frame = +1 Query: 16 LIPFADLINHNGDITSKESCWEIKGKG---FLGRDTVFSLRTPVDVKSGEQIYVQYDLDK 186 L P DL+NH D+ + WE+ + F+ + T FS + ++++ Y + Sbjct: 236 LYPIVDLLNHKNDVPVR---WEMNEQNELCFMSQTTTFSAQ--------DELFNNYG-NI 283 Query: 187 SNAELALDYGFTESNSSRDSYTLTLE-----ISESDPFYEDKLDIAELNGMGETAYFDVV 351 SN + L+YGF +S++ D LTL+ +S + + +G F + Sbjct: 284 SNEKCLLNYGFWDSSNKFDFSRLTLKLPSTLVSGLPVDFNKSGNFVTDDGETTILQFSLK 343 Query: 352 LGESLPPQMITYLRLL 399 + E LPP ++ L Sbjct: 344 ISEPLPPVLLALFAYL 359
>PANF_ECOLI (P16256) Sodium/pantothenate symporter (Pantothenate permease)| Length = 483 Score = 31.6 bits (70), Expect = 1.9 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 6/49 (12%) Frame = +1 Query: 331 TAYFDVVLGESL------PPQMITYLRLLCLGGTDAFLLEALFRNKVWE 459 +A +VLG L PP+MI +L LL GG +A L L WE Sbjct: 370 SAVITLVLGALLLLAAWKPPEMIIWLNLLAFGGLEAVFLWPLVLGLYWE 418
>Y1602_HAEIN (P44270) Hypothetical protein HI1602| Length = 151 Score = 30.8 bits (68), Expect = 3.2 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = +2 Query: 128 GRQWMLNLENRYMFSMTWTRVMLNWHLTMGS 220 G+ W +++R+ F +NWH+ MGS Sbjct: 36 GQNWFAEIQDRFPFPFNLIPADINWHVAMGS 66
>TAGB_BACSU (P27621) Putative CDP-glycerol:glycerophosphate| glycerophosphotransferase (EC 2.7.8.-) (Major teichoic acid biosynthesis protein B) Length = 381 Score = 30.8 bits (68), Expect = 3.2 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Frame = +1 Query: 76 WEIKG--KGFLGRDTVFSLRTPVDVKSGEQIYVQYD-LDKSNAELALDYGFTESNSSRDS 246 W G K F D RT D+K +++Y YD L + E+A F +S +D+ Sbjct: 125 WHANGSLKKFGLEDITNMQRTKTDIKRFQKVYSSYDYLTVGSEEMA--NIFKKSFGIKDN 182 Query: 247 YTLTLEISESDPFY-EDKLDIAE 312 L + + +DP+Y E+K I++ Sbjct: 183 QLLKIGVPLTDPYYRENKKKISD 205
>CNTP2_PONPY (Q5RD64) Contactin-associated protein-like 2 precursor| Length = 1331 Score = 30.4 bits (67), Expect = 4.2 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 7/118 (5%) Frame = +1 Query: 187 SNAELALDYGFTESNSSRDSYTLTLEISESDPFYEDKLDIAELN-----GMGETAYFDVV 351 ++A + + ESN TL+ S +DP++ D LD A + G G+ V Sbjct: 1199 ASAHVHIQGELVESNCGASPLTLSPMSSATDPWHLDHLDSASADFPYNPGQGQAIRNGVN 1258 Query: 352 LGESLPPQMITYL--RLLCLGGTDAFLLEALFRNKVWEHLELPVSRDNEESICQVIQN 519 ++ +I + +LC T FL+ +FR+K H ++ ES I N Sbjct: 1259 RNSAIIGGVIAVVIFTILC---TLVFLIRYMFRHKGTYHTNEAKGAESAESADAAIMN 1313
>CNTP2_HUMAN (Q9UHC6) Contactin-associated protein-like 2 precursor (Cell| recognition molecule Caspr2) Length = 1331 Score = 30.4 bits (67), Expect = 4.2 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 7/118 (5%) Frame = +1 Query: 187 SNAELALDYGFTESNSSRDSYTLTLEISESDPFYEDKLDIAELN-----GMGETAYFDVV 351 ++A + + ESN TL+ S +DP++ D LD A + G G+ V Sbjct: 1199 ASAHVHIQGELVESNCGASPLTLSPMSSATDPWHLDHLDSASADFPYNPGQGQAIRNGVN 1258 Query: 352 LGESLPPQMITYL--RLLCLGGTDAFLLEALFRNKVWEHLELPVSRDNEESICQVIQN 519 ++ +I + +LC T FL+ +FR+K H ++ ES I N Sbjct: 1259 RNSAIIGGVIAVVIFTILC---TLVFLIRYMFRHKGTYHTNEAKGAESAESADAAIMN 1313
>PALB_EMENI (Q00204) Calpain-like protease palB (EC 3.4.22.-) (Cysteine| protease palB) Length = 847 Score = 30.4 bits (67), Expect = 4.2 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +3 Query: 303 HCRAKWNGGDRILRCRPR*ITSSSNDY 383 H + W+GG RI R R R I + S DY Sbjct: 632 HVKLFWSGGKRIARVRSRDIVADSGDY 658
>CNTP2_MOUSE (Q9CPW0) Contactin-associated protein-like 2 precursor (Cell| recognition molecule Caspr2) Length = 1332 Score = 30.4 bits (67), Expect = 4.2 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 7/118 (5%) Frame = +1 Query: 187 SNAELALDYGFTESNSSRDSYTLTLEISESDPFYEDKLDIAELN-----GMGETAYFDVV 351 ++A + + ESN TL+ S +DP++ D LD A + G G+ V Sbjct: 1200 ASAHVHIQGELVESNCGASPLTLSPMSSATDPWHLDHLDSASADFPYNPGQGQAIRNGVN 1259 Query: 352 LGESLPPQMITYL--RLLCLGGTDAFLLEALFRNKVWEHLELPVSRDNEESICQVIQN 519 ++ +I + +LC T FL+ +FR+K H ++ ES I N Sbjct: 1260 RNSAIIGGVIAVVIFTILC---TLVFLIRYMFRHKGTYHTNEAKGAESAESADAAIMN 1314
>TRA1_YEAST (P38811) Transcription-associated protein 1 (p400 kDa component of| SAGA) Length = 3744 Score = 30.4 bits (67), Expect = 4.2 Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Frame = +1 Query: 226 SNSSRDSYTLTLEISESDPFYEDK-LDIAELNGMGETAYFDVVLGES 363 SNS+ DS+TL ++++ ++E+K L+I +N + DVV+ +S Sbjct: 2018 SNSNSDSHTLAIDLASLILYWENKTLEITNVNNTKTDSDGDVVMSDS 2064
>RNT2_HUMAN (O00584) Ribonuclease T2 precursor (EC 3.1.27.-) (Ribonuclease 6)| Length = 256 Score = 30.4 bits (67), Expect = 4.2 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = +1 Query: 388 LRLLCLGGTDAFLLEALFRNKVWEHLELPVSRDNEESICQVIQNACK 528 L LLCLGG D L + N W+ +L + + E++C+ IQN C+ Sbjct: 16 LALLCLGGADKRLRD----NHEWK--KLIMVQHWPETVCEKIQNDCR 56
>RALB_TODPA (P49193) Retinal-binding protein (RALBP)| Length = 342 Score = 30.4 bits (67), Expect = 4.2 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Frame = +1 Query: 28 ADLINHNGDITSKESCWEIKGKGFLGRDTVFSLRTPVDVKSGEQIYVQYDLDKSNAELAL 207 ++LI H G E+ + +L F + V SG++IYV+Y+++ N + Sbjct: 194 SELICHGG---------EVPKEFYLENTDDFETMETITVGSGDKIYVEYEIENENTYIKW 244 Query: 208 DY-------GFTESNSSRDSYTLTLEISESD 279 +Y GF + D + + I +D Sbjct: 245 EYKTEEHDIGFGLFRKNGDEWEEVVPIERTD 275
>SPC3_YEAST (Q12133) Microsomal signal peptidase subunit 3 (EC 3.4.-.-)| Length = 184 Score = 29.6 bits (65), Expect = 7.1 Identities = 25/78 (32%), Positives = 31/78 (39%) Frame = +1 Query: 31 DLINHNGDITSKESCWEIKGKGFLGRDTVFSLRTPVDVKSGEQIYVQYDLDKSNAELALD 210 D + D+ SK S W+I+ F G+D VF L V G L Sbjct: 123 DAVIDVNDLRSKYSIWDIEDGKFEGKDLVFKLHWNVQPWVG----------------LLT 166 Query: 211 YGFTESNSSRDSYTLTLE 264 YG T N YTLT+E Sbjct: 167 YGETVGN-----YTLTVE 179
>DNAJ_HELHP (Q7VG06) Chaperone protein dnaJ| Length = 385 Score = 29.3 bits (64), Expect = 9.3 Identities = 21/97 (21%), Positives = 36/97 (37%) Frame = +1 Query: 58 TSKESCWEIKGKGFLGRDTVFSLRTPVDVKSGEQIYVQYDLDKSNAELALDYGFTESNSS 237 ++ E C + KG GF + F + P + G +I + G + N S Sbjct: 196 SASEKCSKCKGSGFEISEESFEVSIPEGIDDGNRIRIG------------GRGNADKNGS 243 Query: 238 RDSYTLTLEISESDPFYEDKLDIAELNGMGETAYFDV 348 R + + ++E + F D GE Y +V Sbjct: 244 RGDLYIAVSVAEDENFVRD----------GENVYIEV 270
>CLC4F_RAT (P10716) C-type lectin domain family 4 member F (C-type lectin| superfamily member 13) (C-type lectin 13) (Kupffer cell receptor) Length = 550 Score = 29.3 bits (64), Expect = 9.3 Identities = 21/70 (30%), Positives = 37/70 (52%) Frame = +1 Query: 46 NGDITSKESCWEIKGKGFLGRDTVFSLRTPVDVKSGEQIYVQYDLDKSNAELALDYGFTE 225 N DI + +KG G L +T +LR+ ++V S + ++ DL+K+NA + G + Sbjct: 148 NADIQQAKDV--LKGTGALASETQ-ALRSSLEVASADIHSLRGDLEKANAMTSQTQGLLK 204 Query: 226 SNSSRDSYTL 255 S++ S L Sbjct: 205 SSTDNTSAEL 214 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,018,035 Number of Sequences: 219361 Number of extensions: 1890540 Number of successful extensions: 4689 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4594 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4685 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
