Clone Name | bah63h06 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 369 bits (186), Expect = 7e-99 Identities = 354/410 (86%) Strand = Plus / Minus Query: 156 acagatatatgttcagtatgacctggacaagagtaatgctgaattggcacttgactatgg 215 |||||||||| |||||||||| |||||||||| || || ||||| || ||||| ||||| Sbjct: 14553683 acagatatatattcagtatgatttggacaagagcaacgcagaattagcgcttgattatgg 14553624 Query: 216 gttcaccgaatcaaactcgtcaagggactcatatactctgacgctggagatctctgaatc 275 |||||||||||||| || |||||||| ||||||||||||| ||||||| |||||||| Sbjct: 14553623 tttcaccgaatcaaattcatcaagggatgcatatactctgaccttggagatatctgaatc 14553564 Query: 276 tgatccattctatgaagacaaactcgacattgcagagctaaatggaatgggggagaccgc 335 ||||||||| ||||| ||||| || |||||||||||||||||||| ||||||||||| || Sbjct: 14553563 tgatccattttatgatgacaagcttgacattgcagagctaaatgggatgggggagactgc 14553504 Query: 336 atacttcgatgtcgtcctcggtgaatcacttcctcctcaaatgattacttacctgcgatt 395 |||||| ||| | ||||| |||||||| ||||||||||||||| | ||||||||||||| Sbjct: 14553503 atactttgatattgtccttggtgaatctcttcctcctcaaatgctaccttacctgcgatt 14553444 Query: 396 actttgccttgggggaacggacgcatttctcttggaagccctctttagaaataaagtttg 455 ||| |||||||||||||| || ||||||||||||||||| ||||| |||||| ||||| Sbjct: 14553443 actctgccttgggggaacagatgcatttctcttggaagcactcttcagaaatgctgtttg 14553384 Query: 456 ggagcaccttgaattgcctgtgagtcgtgataacgaggaatcaatatgccaagtcatcca 515 || ||||||||| |||| ||||||| ||||| || ||| | ||||| || ||||||| Sbjct: 14553383 gggccaccttgaactgccagtgagtcaagataatgaagaagcgatatgtcaggtcatccg 14553324 Query: 516 gaatgcctgcaaatctgcccttgctgcctaccacaccaccatagaagagg 565 |||||||||||||||||||||| ||| |||||||| ||||||||||||| Sbjct: 14553323 aaatgcctgcaaatctgcccttggtgcttaccacactaccatagaagagg 14553274 Score = 99.6 bits (50), Expect = 1e-17 Identities = 104/122 (85%) Strand = Plus / Minus Query: 38 taaatcacaatggtgatattacctcaaaagaatcgtgttgggagatcaaaggaaagggat 97 ||||||||| | |||||| ||||||||||| || |||||||||||||||||||||| Sbjct: 14553901 taaatcacagcgatgatataacctcaaaagagtccagttgggagatcaaaggaaagggtc 14553842 Query: 98 ttttaggcagggatactgtgttctctttgcggacgccagtggatgttaaatctggagaac 157 |||| || |||||| |||||| |||||||| || || ||| |||||||||||||||||| Sbjct: 14553841 tttttggtagggatgttgtgttttctttgcgaacaccggtgaatgttaaatctggagaac 14553782 Query: 158 ag 159 || Sbjct: 14553781 ag 14553780 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 1 ggagataagcttgccctcataccatttgctgatct 35 |||||||||||||| |||||||||||||||||||| Sbjct: 14554191 ggagataagcttgctctcataccatttgctgatct 14554157
>dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1294_G06 Length = 115468 Score = 369 bits (186), Expect = 7e-99 Identities = 354/410 (86%) Strand = Plus / Minus Query: 156 acagatatatgttcagtatgacctggacaagagtaatgctgaattggcacttgactatgg 215 |||||||||| |||||||||| |||||||||| || || ||||| || ||||| ||||| Sbjct: 51972 acagatatatattcagtatgatttggacaagagcaacgcagaattagcgcttgattatgg 51913 Query: 216 gttcaccgaatcaaactcgtcaagggactcatatactctgacgctggagatctctgaatc 275 |||||||||||||| || |||||||| ||||||||||||| ||||||| |||||||| Sbjct: 51912 tttcaccgaatcaaattcatcaagggatgcatatactctgaccttggagatatctgaatc 51853 Query: 276 tgatccattctatgaagacaaactcgacattgcagagctaaatggaatgggggagaccgc 335 ||||||||| ||||| ||||| || |||||||||||||||||||| ||||||||||| || Sbjct: 51852 tgatccattttatgatgacaagcttgacattgcagagctaaatgggatgggggagactgc 51793 Query: 336 atacttcgatgtcgtcctcggtgaatcacttcctcctcaaatgattacttacctgcgatt 395 |||||| ||| | ||||| |||||||| ||||||||||||||| | ||||||||||||| Sbjct: 51792 atactttgatattgtccttggtgaatctcttcctcctcaaatgctaccttacctgcgatt 51733 Query: 396 actttgccttgggggaacggacgcatttctcttggaagccctctttagaaataaagtttg 455 ||| |||||||||||||| || ||||||||||||||||| ||||| |||||| ||||| Sbjct: 51732 actctgccttgggggaacagatgcatttctcttggaagcactcttcagaaatgctgtttg 51673 Query: 456 ggagcaccttgaattgcctgtgagtcgtgataacgaggaatcaatatgccaagtcatcca 515 || ||||||||| |||| ||||||| ||||| || ||| | ||||| || ||||||| Sbjct: 51672 gggccaccttgaactgccagtgagtcaagataatgaagaagcgatatgtcaggtcatccg 51613 Query: 516 gaatgcctgcaaatctgcccttgctgcctaccacaccaccatagaagagg 565 |||||||||||||||||||||| ||| |||||||| ||||||||||||| Sbjct: 51612 aaatgcctgcaaatctgcccttggtgcttaccacactaccatagaagagg 51563 Score = 99.6 bits (50), Expect = 1e-17 Identities = 104/122 (85%) Strand = Plus / Minus Query: 38 taaatcacaatggtgatattacctcaaaagaatcgtgttgggagatcaaaggaaagggat 97 ||||||||| | |||||| ||||||||||| || |||||||||||||||||||||| Sbjct: 52190 taaatcacagcgatgatataacctcaaaagagtccagttgggagatcaaaggaaagggtc 52131 Query: 98 ttttaggcagggatactgtgttctctttgcggacgccagtggatgttaaatctggagaac 157 |||| || |||||| |||||| |||||||| || || ||| |||||||||||||||||| Sbjct: 52130 tttttggtagggatgttgtgttttctttgcgaacaccggtgaatgttaaatctggagaac 52071 Query: 158 ag 159 || Sbjct: 52070 ag 52069 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 1 ggagataagcttgccctcataccatttgctgatct 35 |||||||||||||| |||||||||||||||||||| Sbjct: 52480 ggagataagcttgctctcataccatttgctgatct 52446
>gb|U35620.1|NTU35620 Nicotiana tabacum ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase (rbcmtT) mRNA, complete cds Length = 1989 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 167 ttcagtatgacctggacaagagtaatgctgaattggcacttgactatgggttcaccgaa 225 |||| ||||||||| |||| ||||||||||| |||| ||||||||||| |||| |||| Sbjct: 956 ttcaatatgacctgaacaaaagtaatgctgatatggcgcttgactatggtttcatcgaa 1014 Score = 48.1 bits (24), Expect = 0.034 Identities = 45/52 (86%) Strand = Plus / Plus Query: 518 atgcctgcaaatctgcccttgctgcctaccacaccaccatagaagaggatga 569 |||| ||||||||||| ||| ||| ||| |||||||| || ||||||||||| Sbjct: 1307 atgcatgcaaatctgcactttctggctatcacaccacaattgaagaggatga 1358
>gb|U35619.1|NTU35619 Nicotiana tabacum ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase (rbcmtT) gene, exons 1-6, complete cds Length = 6095 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 167 ttcagtatgacctggacaagagtaatgctgaattggcacttgactatgggttcaccgaa 225 |||| ||||||||| |||| ||||||||||| |||| ||||||||||| |||| |||| Sbjct: 4183 ttcaatatgacctgaacaaaagtaatgctgatatggcgcttgactatggtttcatcgaa 4241 Score = 40.1 bits (20), Expect = 8.2 Identities = 41/48 (85%) Strand = Plus / Plus Query: 518 atgcctgcaaatctgcccttgctgcctaccacaccaccatagaagagg 565 |||| ||||||||||| ||| ||| ||| |||||||| || ||||||| Sbjct: 4534 atgcatgcaaatctgcactttctggctatcacaccacaattgaagagg 4581
>gb|L34291.1|PEARBCM Pisum sativum ribulose-1,5 bisphosphate carboxylase large subunit N-methyltransferase (rbcMT) mRNA, complete cds Length = 1792 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 520 gcctgcaaatctgcccttgctg 541 |||||||||||||||||||||| Sbjct: 1265 gcctgcaaatctgcccttgctg 1286 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 245 catatactctgacgctggagatctctga 272 |||| ||||||||||||||||| ||||| Sbjct: 990 catacactctgacgctggagatatctga 1017
>gb|AC110918.9| Mus musculus chromosome 5, clone RP23-189P23, complete sequence Length = 267946 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 gagaagatctgcaatcaagac 604 ||||||||||||||||||||| Sbjct: 226970 gagaagatctgcaatcaagac 226950
>emb|AL671983.18| Mouse DNA sequence from clone RP23-232B3 on chromosome X, complete sequence Length = 176577 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 72 gtgttgggagatcaaaggaaaggga 96 |||||||||||| |||||||||||| Sbjct: 68244 gtgttgggagataaaaggaaaggga 68268
>gb|AC099614.9| Mus musculus chromosome 15, clone RP23-408O11, complete sequence Length = 201092 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 ctctttagaaataaagtttg 455 |||||||||||||||||||| Sbjct: 151439 ctctttagaaataaagtttg 151458
>gb|AC125372.4| Mus musculus BAC clone RP24-505G5 from chromosome 7, complete sequence Length = 131080 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 aaaggaaagggatttttaggcagg 108 |||||||||||||| ||||||||| Sbjct: 62362 aaaggaaagggattcttaggcagg 62385
>gb|AC122802.2| Mus musculus BAC clone RP24-136N24 from 6, complete sequence Length = 185938 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 atccattctatgaagacaaa 297 |||||||||||||||||||| Sbjct: 93853 atccattctatgaagacaaa 93872
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 acttcgatgtcgtcctcggt 357 |||||||||||||||||||| Sbjct: 929632 acttcgatgtcgtcctcggt 929651
>emb|AL136300.22| Human DNA sequence from clone RP11-10G5 on chromosome 13 Contains the gene for a novel protein similar to zinc finger protein 183 (ZNF183), the 5' of the FARP1 gene for (chondrocyte-derived) FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 and two CpG islands, complete sequence Length = 170916 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 atctgataaatcacaatggt 51 |||||||||||||||||||| Sbjct: 19502 atctgataaatcacaatggt 19483
>gb|AC162038.6| Mus musculus 6 BAC RP24-576J4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 175787 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 544 taccacaccaccatagaagaggat 567 ||||||||||||| |||||||||| Sbjct: 133600 taccacaccaccagagaagaggat 133577
>emb|CR407704.10| Zebrafish DNA sequence from clone CH211-195G8 in linkage group 17, complete sequence Length = 146938 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tctctgaatctgatccattc 285 |||||||||||||||||||| Sbjct: 101220 tctctgaatctgatccattc 101239
>emb|AL672121.10| Mouse DNA sequence from clone RP23-256H2 on chromosome 11, complete sequence Length = 36089 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 553 accatagaagaggatgaagagcta 576 |||||||||| ||||||||||||| Sbjct: 26548 accatagaaggggatgaagagcta 26571
>gb|AC036196.10| Homo sapiens chromosome 15, clone RP11-599A21, complete sequence Length = 180366 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 584 gagaagatctgcaatcaaga 603 |||||||||||||||||||| Sbjct: 59486 gagaagatctgcaatcaaga 59505
>gb|AC068870.17| Homo sapiens chromosome , clone RP11-775C24, complete sequence Length = 194237 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 584 gagaagatctgcaatcaaga 603 |||||||||||||||||||| Sbjct: 168446 gagaagatctgcaatcaaga 168465
>gb|AC092867.7| Homo sapiens 12p BAC RP11-100C20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 195583 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 364 cttcctcctcaaatgattacttac 387 |||| ||||||||||||||||||| Sbjct: 147795 cttcatcctcaaatgattacttac 147818
>gb|AC023796.22| Homo sapiens 12p BAC RP11-625L16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 173342 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 364 cttcctcctcaaatgattacttac 387 |||| ||||||||||||||||||| Sbjct: 171631 cttcatcctcaaatgattacttac 171654
>gb|AC092661.2| Homo sapiens BAC clone RP11-510D4 from 4, complete sequence Length = 176026 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 aaatctggagaacagatatatgtt 168 |||| ||||||||||||||||||| Sbjct: 56284 aaatgtggagaacagatatatgtt 56307
>gb|AF269422.1|AF269422 Staphylococcus epidermidis strain SR1 clone step.1003e09 genomic sequence Length = 2913 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 559 gaagaggatgaagagctact 578 |||||||||||||||||||| Sbjct: 1316 gaagaggatgaagagctact 1335
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 578 tggagagagaagatctgcaa 597 |||||||||||||||||||| Sbjct: 149990 tggagagagaagatctgcaa 149971
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 578 tggagagagaagatctgcaa 597 |||||||||||||||||||| Sbjct: 152716 tggagagagaagatctgcaa 152697
>gb|AF270184.1|AF270184 Staphylococcus epidermidis strain SR1 clone step.1052f01 genomic sequence Length = 3889 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 559 gaagaggatgaagagctact 578 |||||||||||||||||||| Sbjct: 69 gaagaggatgaagagctact 88
>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome Length = 2616530 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 559 gaagaggatgaagagctact 578 |||||||||||||||||||| Sbjct: 1986702 gaagaggatgaagagctact 1986721
>gb|AC155330.3| Mus musculus 6 BAC RP24-146L23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 215602 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 544 taccacaccaccatagaagaggat 567 ||||||||||||| |||||||||| Sbjct: 168835 taccacaccaccagagaagaggat 168858
>dbj|AP000974.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-700A24, complete sequence Length = 94359 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 442 agaaataaagtttgggagca 461 |||||||||||||||||||| Sbjct: 91113 agaaataaagtttgggagca 91132
>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome Length = 2499279 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 559 gaagaggatgaagagctact 578 |||||||||||||||||||| Sbjct: 1991765 gaagaggatgaagagctact 1991784
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 578 tggagagagaagatctgcaa 597 |||||||||||||||||||| Sbjct: 152716 tggagagagaagatctgcaa 152697
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 578 tggagagagaagatctgcaa 597 |||||||||||||||||||| Sbjct: 149990 tggagagagaagatctgcaa 149971
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 578 tggagagagaagatctgcaa 597 |||||||||||||||||||| Sbjct: 152277 tggagagagaagatctgcaa 152296
>emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161808 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 578 tggagagagaagatctgcaa 597 |||||||||||||||||||| Sbjct: 101599 tggagagagaagatctgcaa 101580
>gb|AC149611.6| Mus musculus BAC clone RP23-157P4 from 7, complete sequence Length = 217353 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 aaaggaaagggatttttaggcagg 108 |||||||||||||| ||||||||| Sbjct: 212965 aaaggaaagggattcttaggcagg 212988 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,378,343 Number of Sequences: 3902068 Number of extensions: 5378343 Number of successful extensions: 106720 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 106475 Number of HSP's gapped (non-prelim): 245 length of query: 605 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 582 effective length of database: 17,143,297,704 effective search space: 9977399263728 effective search space used: 9977399263728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)