ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah63h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 369 7e-99
2dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic D... 369 7e-99
3gb|U35620.1|NTU35620 Nicotiana tabacum ribulose-1,5 bisphosphate... 54 5e-04
4gb|U35619.1|NTU35619 Nicotiana tabacum ribulose-1,5 bisphosphate... 54 5e-04
5gb|L34291.1|PEARBCM Pisum sativum ribulose-1,5 bisphosphate carb... 44 0.53
6gb|AC110918.9| Mus musculus chromosome 5, clone RP23-189P23, com... 42 2.1
7emb|AL671983.18| Mouse DNA sequence from clone RP23-232B3 on chr... 42 2.1
8gb|AC099614.9| Mus musculus chromosome 15, clone RP23-408O11, co... 40 8.2
9gb|AC125372.4| Mus musculus BAC clone RP24-505G5 from chromosome... 40 8.2
10gb|AC122802.2| Mus musculus BAC clone RP24-136N24 from 6, comple... 40 8.2
11gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 8.2
12emb|AL136300.22| Human DNA sequence from clone RP11-10G5 on chro... 40 8.2
13gb|AC162038.6| Mus musculus 6 BAC RP24-576J4 (Roswell Park Cance... 40 8.2
14emb|CR407704.10| Zebrafish DNA sequence from clone CH211-195G8 i... 40 8.2
15emb|AL672121.10| Mouse DNA sequence from clone RP23-256H2 on chr... 40 8.2
16gb|AC036196.10| Homo sapiens chromosome 15, clone RP11-599A21, c... 40 8.2
17gb|AC068870.17| Homo sapiens chromosome , clone RP11-775C24, com... 40 8.2
18gb|AC092867.7| Homo sapiens 12p BAC RP11-100C20 (Roswell Park Ca... 40 8.2
19gb|AC023796.22| Homo sapiens 12p BAC RP11-625L16 (Roswell Park C... 40 8.2
20gb|AC092661.2| Homo sapiens BAC clone RP11-510D4 from 4, complet... 40 8.2
21gb|AF269422.1|AF269422 Staphylococcus epidermidis strain SR1 clo... 40 8.2
22dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
23dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
24gb|AF270184.1|AF270184 Staphylococcus epidermidis strain SR1 clo... 40 8.2
25gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome 40 8.2
26gb|AC155330.3| Mus musculus 6 BAC RP24-146L23 (Roswell Park Canc... 40 8.2
27dbj|AP000974.5| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 8.2
28gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete g... 40 8.2
29gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
30gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
31emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa... 40 8.2
32emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa... 40 8.2
33gb|AC149611.6| Mus musculus BAC clone RP23-157P4 from 7, complet... 40 8.2

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  369 bits (186), Expect = 7e-99
 Identities = 354/410 (86%)
 Strand = Plus / Minus

                                                                            
Query: 156      acagatatatgttcagtatgacctggacaagagtaatgctgaattggcacttgactatgg 215
                |||||||||| ||||||||||  |||||||||| || || ||||| || ||||| |||||
Sbjct: 14553683 acagatatatattcagtatgatttggacaagagcaacgcagaattagcgcttgattatgg 14553624

                                                                            
Query: 216      gttcaccgaatcaaactcgtcaagggactcatatactctgacgctggagatctctgaatc 275
                 |||||||||||||| || ||||||||  |||||||||||||  ||||||| ||||||||
Sbjct: 14553623 tttcaccgaatcaaattcatcaagggatgcatatactctgaccttggagatatctgaatc 14553564

                                                                            
Query: 276      tgatccattctatgaagacaaactcgacattgcagagctaaatggaatgggggagaccgc 335
                ||||||||| ||||| ||||| || |||||||||||||||||||| ||||||||||| ||
Sbjct: 14553563 tgatccattttatgatgacaagcttgacattgcagagctaaatgggatgggggagactgc 14553504

                                                                            
Query: 336      atacttcgatgtcgtcctcggtgaatcacttcctcctcaaatgattacttacctgcgatt 395
                |||||| ||| | ||||| |||||||| ||||||||||||||| |  |||||||||||||
Sbjct: 14553503 atactttgatattgtccttggtgaatctcttcctcctcaaatgctaccttacctgcgatt 14553444

                                                                            
Query: 396      actttgccttgggggaacggacgcatttctcttggaagccctctttagaaataaagtttg 455
                ||| |||||||||||||| || ||||||||||||||||| ||||| ||||||   |||||
Sbjct: 14553443 actctgccttgggggaacagatgcatttctcttggaagcactcttcagaaatgctgtttg 14553384

                                                                            
Query: 456      ggagcaccttgaattgcctgtgagtcgtgataacgaggaatcaatatgccaagtcatcca 515
                ||  ||||||||| |||| |||||||  ||||| || ||| | ||||| || ||||||| 
Sbjct: 14553383 gggccaccttgaactgccagtgagtcaagataatgaagaagcgatatgtcaggtcatccg 14553324

                                                                  
Query: 516      gaatgcctgcaaatctgcccttgctgcctaccacaccaccatagaagagg 565
                 |||||||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct: 14553323 aaatgcctgcaaatctgcccttggtgcttaccacactaccatagaagagg 14553274



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 104/122 (85%)
 Strand = Plus / Minus

                                                                            
Query: 38       taaatcacaatggtgatattacctcaaaagaatcgtgttgggagatcaaaggaaagggat 97
                |||||||||  | |||||| ||||||||||| ||  ||||||||||||||||||||||  
Sbjct: 14553901 taaatcacagcgatgatataacctcaaaagagtccagttgggagatcaaaggaaagggtc 14553842

                                                                            
Query: 98       ttttaggcagggatactgtgttctctttgcggacgccagtggatgttaaatctggagaac 157
                |||| || ||||||  |||||| |||||||| || || ||| ||||||||||||||||||
Sbjct: 14553841 tttttggtagggatgttgtgttttctttgcgaacaccggtgaatgttaaatctggagaac 14553782

                  
Query: 158      ag 159
                ||
Sbjct: 14553781 ag 14553780



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                   
Query: 1        ggagataagcttgccctcataccatttgctgatct 35
                |||||||||||||| ||||||||||||||||||||
Sbjct: 14554191 ggagataagcttgctctcataccatttgctgatct 14554157



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>dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1294_G06
          Length = 115468

 Score =  369 bits (186), Expect = 7e-99
 Identities = 354/410 (86%)
 Strand = Plus / Minus

                                                                         
Query: 156   acagatatatgttcagtatgacctggacaagagtaatgctgaattggcacttgactatgg 215
             |||||||||| ||||||||||  |||||||||| || || ||||| || ||||| |||||
Sbjct: 51972 acagatatatattcagtatgatttggacaagagcaacgcagaattagcgcttgattatgg 51913

                                                                         
Query: 216   gttcaccgaatcaaactcgtcaagggactcatatactctgacgctggagatctctgaatc 275
              |||||||||||||| || ||||||||  |||||||||||||  ||||||| ||||||||
Sbjct: 51912 tttcaccgaatcaaattcatcaagggatgcatatactctgaccttggagatatctgaatc 51853

                                                                         
Query: 276   tgatccattctatgaagacaaactcgacattgcagagctaaatggaatgggggagaccgc 335
             ||||||||| ||||| ||||| || |||||||||||||||||||| ||||||||||| ||
Sbjct: 51852 tgatccattttatgatgacaagcttgacattgcagagctaaatgggatgggggagactgc 51793

                                                                         
Query: 336   atacttcgatgtcgtcctcggtgaatcacttcctcctcaaatgattacttacctgcgatt 395
             |||||| ||| | ||||| |||||||| ||||||||||||||| |  |||||||||||||
Sbjct: 51792 atactttgatattgtccttggtgaatctcttcctcctcaaatgctaccttacctgcgatt 51733

                                                                         
Query: 396   actttgccttgggggaacggacgcatttctcttggaagccctctttagaaataaagtttg 455
             ||| |||||||||||||| || ||||||||||||||||| ||||| ||||||   |||||
Sbjct: 51732 actctgccttgggggaacagatgcatttctcttggaagcactcttcagaaatgctgtttg 51673

                                                                         
Query: 456   ggagcaccttgaattgcctgtgagtcgtgataacgaggaatcaatatgccaagtcatcca 515
             ||  ||||||||| |||| |||||||  ||||| || ||| | ||||| || ||||||| 
Sbjct: 51672 gggccaccttgaactgccagtgagtcaagataatgaagaagcgatatgtcaggtcatccg 51613

                                                               
Query: 516   gaatgcctgcaaatctgcccttgctgcctaccacaccaccatagaagagg 565
              |||||||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct: 51612 aaatgcctgcaaatctgcccttggtgcttaccacactaccatagaagagg 51563



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 104/122 (85%)
 Strand = Plus / Minus

                                                                         
Query: 38    taaatcacaatggtgatattacctcaaaagaatcgtgttgggagatcaaaggaaagggat 97
             |||||||||  | |||||| ||||||||||| ||  ||||||||||||||||||||||  
Sbjct: 52190 taaatcacagcgatgatataacctcaaaagagtccagttgggagatcaaaggaaagggtc 52131

                                                                         
Query: 98    ttttaggcagggatactgtgttctctttgcggacgccagtggatgttaaatctggagaac 157
             |||| || ||||||  |||||| |||||||| || || ||| ||||||||||||||||||
Sbjct: 52130 tttttggtagggatgttgtgttttctttgcgaacaccggtgaatgttaaatctggagaac 52071

               
Query: 158   ag 159
             ||
Sbjct: 52070 ag 52069



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                
Query: 1     ggagataagcttgccctcataccatttgctgatct 35
             |||||||||||||| ||||||||||||||||||||
Sbjct: 52480 ggagataagcttgctctcataccatttgctgatct 52446



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>gb|U35620.1|NTU35620 Nicotiana tabacum ribulose-1,5 bisphosphate carboxylase/oxygenase
            large subunit N-methyltransferase (rbcmtT) mRNA, complete
            cds
          Length = 1989

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                       
Query: 167  ttcagtatgacctggacaagagtaatgctgaattggcacttgactatgggttcaccgaa 225
            |||| ||||||||| |||| |||||||||||  |||| ||||||||||| |||| ||||
Sbjct: 956  ttcaatatgacctgaacaaaagtaatgctgatatggcgcttgactatggtttcatcgaa 1014



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                
Query: 518  atgcctgcaaatctgcccttgctgcctaccacaccaccatagaagaggatga 569
            |||| ||||||||||| ||| ||| ||| |||||||| || |||||||||||
Sbjct: 1307 atgcatgcaaatctgcactttctggctatcacaccacaattgaagaggatga 1358



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>gb|U35619.1|NTU35619 Nicotiana tabacum ribulose-1,5 bisphosphate carboxylase/oxygenase
            large subunit N-methyltransferase (rbcmtT) gene, exons
            1-6, complete cds
          Length = 6095

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                       
Query: 167  ttcagtatgacctggacaagagtaatgctgaattggcacttgactatgggttcaccgaa 225
            |||| ||||||||| |||| |||||||||||  |||| ||||||||||| |||| ||||
Sbjct: 4183 ttcaatatgacctgaacaaaagtaatgctgatatggcgcttgactatggtttcatcgaa 4241



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                            
Query: 518  atgcctgcaaatctgcccttgctgcctaccacaccaccatagaagagg 565
            |||| ||||||||||| ||| ||| ||| |||||||| || |||||||
Sbjct: 4534 atgcatgcaaatctgcactttctggctatcacaccacaattgaagagg 4581



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>gb|L34291.1|PEARBCM Pisum sativum ribulose-1,5 bisphosphate carboxylase large subunit
            N-methyltransferase (rbcMT) mRNA, complete cds
          Length = 1792

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 520  gcctgcaaatctgcccttgctg 541
            ||||||||||||||||||||||
Sbjct: 1265 gcctgcaaatctgcccttgctg 1286



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 245  catatactctgacgctggagatctctga 272
            |||| ||||||||||||||||| |||||
Sbjct: 990  catacactctgacgctggagatatctga 1017



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>gb|AC110918.9| Mus musculus chromosome 5, clone RP23-189P23, complete sequence
          Length = 267946

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 584    gagaagatctgcaatcaagac 604
              |||||||||||||||||||||
Sbjct: 226970 gagaagatctgcaatcaagac 226950



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>emb|AL671983.18| Mouse DNA sequence from clone RP23-232B3 on chromosome X, complete
             sequence
          Length = 176577

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 72    gtgttgggagatcaaaggaaaggga 96
             |||||||||||| ||||||||||||
Sbjct: 68244 gtgttgggagataaaaggaaaggga 68268



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>gb|AC099614.9| Mus musculus chromosome 15, clone RP23-408O11, complete sequence
          Length = 201092

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 436    ctctttagaaataaagtttg 455
              ||||||||||||||||||||
Sbjct: 151439 ctctttagaaataaagtttg 151458



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>gb|AC125372.4| Mus musculus BAC clone RP24-505G5 from chromosome 7, complete sequence
          Length = 131080

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 85    aaaggaaagggatttttaggcagg 108
             |||||||||||||| |||||||||
Sbjct: 62362 aaaggaaagggattcttaggcagg 62385



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>gb|AC122802.2| Mus musculus BAC clone RP24-136N24 from 6, complete sequence
          Length = 185938

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   atccattctatgaagacaaa 297
             ||||||||||||||||||||
Sbjct: 93853 atccattctatgaagacaaa 93872



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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 338    acttcgatgtcgtcctcggt 357
              ||||||||||||||||||||
Sbjct: 929632 acttcgatgtcgtcctcggt 929651



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>emb|AL136300.22| Human DNA sequence from clone RP11-10G5 on chromosome 13 Contains the
             gene for a novel protein similar to zinc finger protein
             183 (ZNF183), the 5' of the FARP1 gene for
             (chondrocyte-derived) FERM, RhoGEF (ARHGEF) and pleckstrin
             domain protein 1 and two CpG islands, complete sequence
          Length = 170916

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    atctgataaatcacaatggt 51
             ||||||||||||||||||||
Sbjct: 19502 atctgataaatcacaatggt 19483



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>gb|AC162038.6| Mus musculus 6 BAC RP24-576J4 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 175787

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 544    taccacaccaccatagaagaggat 567
              ||||||||||||| ||||||||||
Sbjct: 133600 taccacaccaccagagaagaggat 133577



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>emb|CR407704.10| Zebrafish DNA sequence from clone CH211-195G8 in linkage group 17,
              complete sequence
          Length = 146938

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    tctctgaatctgatccattc 285
              ||||||||||||||||||||
Sbjct: 101220 tctctgaatctgatccattc 101239



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>emb|AL672121.10| Mouse DNA sequence from clone RP23-256H2 on chromosome 11, complete
             sequence
          Length = 36089

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 553   accatagaagaggatgaagagcta 576
             |||||||||| |||||||||||||
Sbjct: 26548 accatagaaggggatgaagagcta 26571



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>gb|AC036196.10| Homo sapiens chromosome 15, clone RP11-599A21, complete sequence
          Length = 180366

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 584   gagaagatctgcaatcaaga 603
             ||||||||||||||||||||
Sbjct: 59486 gagaagatctgcaatcaaga 59505



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>gb|AC068870.17| Homo sapiens chromosome , clone RP11-775C24, complete sequence
          Length = 194237

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 584    gagaagatctgcaatcaaga 603
              ||||||||||||||||||||
Sbjct: 168446 gagaagatctgcaatcaaga 168465



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>gb|AC092867.7| Homo sapiens 12p BAC RP11-100C20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 195583

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 364    cttcctcctcaaatgattacttac 387
              |||| |||||||||||||||||||
Sbjct: 147795 cttcatcctcaaatgattacttac 147818



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>gb|AC023796.22| Homo sapiens 12p BAC RP11-625L16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 173342

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 364    cttcctcctcaaatgattacttac 387
              |||| |||||||||||||||||||
Sbjct: 171631 cttcatcctcaaatgattacttac 171654



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>gb|AC092661.2| Homo sapiens BAC clone RP11-510D4 from 4, complete sequence
          Length = 176026

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 145   aaatctggagaacagatatatgtt 168
             |||| |||||||||||||||||||
Sbjct: 56284 aaatgtggagaacagatatatgtt 56307



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>gb|AF269422.1|AF269422 Staphylococcus epidermidis strain SR1 clone step.1003e09 genomic
            sequence
          Length = 2913

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 559  gaagaggatgaagagctact 578
            ||||||||||||||||||||
Sbjct: 1316 gaagaggatgaagagctact 1335



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 578    tggagagagaagatctgcaa 597
              ||||||||||||||||||||
Sbjct: 149990 tggagagagaagatctgcaa 149971



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 578    tggagagagaagatctgcaa 597
              ||||||||||||||||||||
Sbjct: 152716 tggagagagaagatctgcaa 152697



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>gb|AF270184.1|AF270184 Staphylococcus epidermidis strain SR1 clone step.1052f01 genomic
           sequence
          Length = 3889

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 559 gaagaggatgaagagctact 578
           ||||||||||||||||||||
Sbjct: 69  gaagaggatgaagagctact 88



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>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 559     gaagaggatgaagagctact 578
               ||||||||||||||||||||
Sbjct: 1986702 gaagaggatgaagagctact 1986721



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>gb|AC155330.3| Mus musculus 6 BAC RP24-146L23 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 215602

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 544    taccacaccaccatagaagaggat 567
              ||||||||||||| ||||||||||
Sbjct: 168835 taccacaccaccagagaagaggat 168858



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>dbj|AP000974.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-700A24, complete
             sequence
          Length = 94359

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 442   agaaataaagtttgggagca 461
             ||||||||||||||||||||
Sbjct: 91113 agaaataaagtttgggagca 91132



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>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 559     gaagaggatgaagagctact 578
               ||||||||||||||||||||
Sbjct: 1991765 gaagaggatgaagagctact 1991784



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 578    tggagagagaagatctgcaa 597
              ||||||||||||||||||||
Sbjct: 152716 tggagagagaagatctgcaa 152697



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 578    tggagagagaagatctgcaa 597
              ||||||||||||||||||||
Sbjct: 149990 tggagagagaagatctgcaa 149971



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>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from
              chromosome 11 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 160673

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 578    tggagagagaagatctgcaa 597
              ||||||||||||||||||||
Sbjct: 152277 tggagagagaagatctgcaa 152296



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>emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 161808

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 578    tggagagagaagatctgcaa 597
              ||||||||||||||||||||
Sbjct: 101599 tggagagagaagatctgcaa 101580



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>gb|AC149611.6| Mus musculus BAC clone RP23-157P4 from 7, complete sequence
          Length = 217353

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 85     aaaggaaagggatttttaggcagg 108
              |||||||||||||| |||||||||
Sbjct: 212965 aaaggaaagggattcttaggcagg 212988


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,378,343
Number of Sequences: 3902068
Number of extensions: 5378343
Number of successful extensions: 106720
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106475
Number of HSP's gapped (non-prelim): 245
length of query: 605
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 582
effective length of database: 17,143,297,704
effective search space: 9977399263728
effective search space used: 9977399263728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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