>YA27_SCHPO (Q09698) Hypothetical protein C2F7.07c in chromosome I|
          Length = 607

 Score = 32.3 bits (72), Expect = 0.86
 Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 24/103 (23%)
 Frame = +2

Query: 152 LSSVPSSLKRWLKRQNDDSVSS-------------GISKIFTNSFVVPLPEEGEQLRVFN 292
           L+++PS+L++W    + D V+              G+ + F N   + + E  ++  V  
Sbjct: 441 LATLPSNLRKWKCPNHSDHVTPRYRLPEKAKVIRVGLPRGFKNKGNIVIDENEDEPSVQT 500

Query: 293 NQIEEDRKIIIS-----------RHNLIELHKVLEENELSCVE 388
            Q++   +++ S           R N+I L K++E++E  C+E
Sbjct: 501 IQLQGKIRVVPSKPFKLNFLEQIRDNVINLRKMVEQDEQLCIE 543

>RIF1_HUMAN (Q5UIP0) Telomere-associated protein RIF1 (Rap1-interacting factor 1|
            homolog)
          Length = 2472

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 167  SSLKRWLKRQNDDSVSSGISKIFTNSFVVPLPEEG 271
            S LKR LKR  +D +SS ++K+   SF  P+ + G
Sbjct: 2180 SILKRGLKRSQEDEISSPVNKVRRVSFADPIYQAG 2214

>MALF_VIBPA (Q87GB7) Maltose transport system permease protein malF|
          Length = 524

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 24/66 (36%), Positives = 32/66 (48%)
 Frame = +2

Query: 110 DKEPPTLMFQNLTRLSSVPSSLKRWLKRQNDDSVSSGISKIFTNSFVVPLPEEGEQLRVF 289
           DKEP   + +N T LSSV   L        DD   SG+ K      +  L E+GE L  +
Sbjct: 178 DKEPIKTIVKNRTALSSVDLHLP-----NGDDIRMSGLRKFAAVVPLYTLQEDGETL--Y 230

Query: 290 NNQIEE 307
           NN+ +E
Sbjct: 231 NNRTQE 236

>METE_BACSU (P80877) 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase) (Superoxide-inducible protein 9)
           (SOI9)
          Length = 761

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 22/149 (14%)
 Frame = +2

Query: 8   FIQKVDEMFDQLTGPVVMICGQNMLAAVSKDKDKDKEPPTLM--------FQNLTRLSSV 163
           F++++DE+F  L+     I  Q  +  VS     D    T +        F++LT  +  
Sbjct: 36  FLKQIDELF--LSAVKTQIDQQIDVVPVSDFTQYDHVLDTAVSFNWIPKRFRHLTDATDT 93

Query: 164 PSSLKRWLKRQNDDSVSSGISKIFTNSFVVPLPEEGEQLR---VFNNQIEEDRKI----- 319
             ++ R +K    D+VSS ++K F  ++   +PE  E +      N Q+E+ R+I     
Sbjct: 94  YFAIARGIK----DAVSSEMTKWFNTNYHYIVPEYDESIEFRLTRNKQLEDYRRIKQEYG 149

Query: 320 ------IISRHNLIELHKVLEENELSCVE 388
                 I+  +  + L K  E +E   ++
Sbjct: 150 VETKPVIVGPYTFVTLAKGYEPSEAKAIQ 178

>COX3_TACAC (Q8W9G7) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide III)
          Length = 261

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 242 CL*RSLIYHWILNHHFVFLANA 177
           CL R L+YH+  NHHF F A A
Sbjct: 218 CLLRQLLYHFTSNHHFGFEAAA 239

>MAK5_CANGA (Q6FY67) ATP-dependent RNA helicase MAK5 (EC 3.6.1.-)|
          Length = 733

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 15/50 (30%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
 Frame = +2

Query: 257 LPEEGEQLRVFNNQIEEDRKIIISRHNLIELHKVLEENELSCV--ELMHV 400
           L +  ++L +  +  EED+ II++++   +++K L++NEL  +  EL H+
Sbjct: 626 LKQAADELGIDMDSDEEDKDIILAKNKNKKMNKTLDKNELKSMKAELTHL 675

>PST3_SCHPO (O74755) Paired amphipathic helix protein pst3 (SIN3 homolog 3)|
          Length = 1154

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +2

Query: 125 TLMFQNLTRLSSVPSSLKRWLKRQNDDSVSSGISKIFTNSFVVPLPEEGEQLRVFNNQIE 304
           +L+F N+ RLS    +   +    +   +S+ +  + +  F +PLP E  +  + +  IE
Sbjct: 717 SLIFLNILRLSDAQLTNSSFYSYADKGRISAVLKALLSQFFGIPLPREALETNLASENIE 776

Query: 305 EDRK 316
             +K
Sbjct: 777 SVKK 780

>DVA1_DICVI (Q24702) DVA-1 polyprotein precursor (Antigen 1) (Allergen 1)|
            (Nematode polyprotein allergen DVA-1) (NPA DVA-1)
            [Contains: DVA-1 unit A; DVA-1 unit B; DVA-1 unit C;
            DVA-1 unit D; DVA-1 unit E; DVA-1 unit F; DVA-1 unit G;
            DVA-1 unit H; DVA-1 un
          Length = 1557

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = +2

Query: 272  EQLRVFNNQIEEDRKIIISRHNLIELHKVLEENELSCVELMHVKSDGVVLSKQKAAKVIG 451
            E +  +   + +D+KI+I     +   KVL E      ++M    D +  +KQKAAK + 
Sbjct: 816  EAMERYLTWLSDDQKIVIKSIYDVNDRKVLYE------KIMEFFDDAIGETKQKAAKELK 869

Query: 452  WARSHYLSSTV 484
             A  HY+   +
Sbjct: 870  DACKHYVKDLI 880

>GLMU_XYLFT (Q87E93) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 457

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = +2

Query: 71  QNMLAAVSKDKDKDKEPPTLMFQNLTRLSSVPSSLKRWLKRQNDDSV 211
           +  +AA+ +DKD D+E   +   N   L +  ++L+RWL + ++ ++
Sbjct: 147 EGKVAAIIEDKDADEEQRRIHTVNTGILCAESTALRRWLSKLSNTNM 193

>GLMU_XYLFA (Q9PE88) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 457

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = +2

Query: 71  QNMLAAVSKDKDKDKEPPTLMFQNLTRLSSVPSSLKRWLKRQNDDSV 211
           +  +AA+ +DKD D+E   +   N   L +  ++L+RWL + ++ ++
Sbjct: 147 EGKVAAIIEDKDADEEQRRIHTVNTGILCAESTALRRWLSKLSNTNM 193

>SSRP_BDEBA (Q6MQ46) SsrA-binding protein|
          Length = 152

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 287 FNNQI-EEDRKIIISRHNLIELHKVLEENELSCVEL 391
           +NN + E  RK+++ R+ L E+ + L E   SCV L
Sbjct: 72  YNNHVPERHRKLLMHRNELDEIFEALREKGYSCVPL 107

>WDR67_HUMAN (Q96DN5) WD-repeat protein 67|
          Length = 1066

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 130  DVSESHSPVFSAIIPEALAKKTK**FSIQWYIKDLHKQFCCSPSRGR 270
            +  E+ S     +I E LAK  +   +  W I+ LHKQ C    R +
Sbjct: 869  EAGETQSQKTQKVIKENLAKAEQACLNTDWQIQSLHKQKCDDLQRNK 915

>MATA2_KLULA (Q9HG13) Mating-type protein A2 (A2 HMG-domain transcription|
           factor)
          Length = 257

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 24/81 (29%), Positives = 37/81 (45%)
 Frame = +2

Query: 80  LAAVSKDKDKDKEPPTLMFQNLTRLSSVPSSLKRWLKRQNDDSVSSGISKIFTNSFVVPL 259
           L  V K K + ++  TL     T+ SS  +  K   K+Q    ++S +SK+   S   P 
Sbjct: 177 LLLVRKIKSRKRKTTTL-----TQDSSPTTKFKYKFKKQPKTKMNSNLSKLRFKSKQPPT 231

Query: 260 PEEGEQLRVFNNQIEEDRKII 322
           P E E   VF  +   + +II
Sbjct: 232 PPE-ENSNVFKKRYTSENRII 251

>COX3_LOLBL (O47475) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide III)
          Length = 259

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 242 CL*RSLIYHWILNHHFVFLANA 177
           CL R LI+H+  NHHF F A A
Sbjct: 216 CLFRMLIHHFSTNHHFGFEAAA 237

>NU205_HUMAN (Q92621) Nuclear pore complex protein Nup205 (Nucleoporin Nup205)|
            (205 kDa nucleoporin)
          Length = 2012

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
 Frame = +2

Query: 305  EDRKIIISRHNLIELHKVLEENELSCVELMHVKSDGV----------VLSKQKAAKVIGW 454
            EDR++II R  L ++H  + ++E +  ELM V +  V          VL++QK   V+G 
Sbjct: 1305 EDRQLII-RDILQDVHDKILDDE-AAQELMPVVAGAVFTLTAHLSQAVLTEQKQTSVLGP 1362

Query: 455  ARSHY 469
            A +HY
Sbjct: 1363 AEAHY 1367

>MATK_APOAN (O09410) Maturase K (Intron maturase)|
          Length = 505

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
 Frame = +2

Query: 125 TLMFQNLTRLSSVPSSLKRWLKRQNDDSVSSGISKIFTNSFVVPLPEEGEQLRVFNNQIE 304
           T M+Q    L+S   S +     +N +  S  IS+ F  SF+V +P     +R+ ++   
Sbjct: 62  TRMYQQNHFLTSANDSSQNPFIGRNKNLYSKMISEGF--SFIVEIPFS---MRLISS--- 113

Query: 305 EDRKIIISRHNLIELHKV---LEEN 370
           E+RK I   HNL  +H +   LE+N
Sbjct: 114 EERKGIFQSHNLRSIHSIFPFLEDN 138

>WDR67_PONPY (Q5RD21) WD-repeat protein 67|
          Length = 944

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 130 DVSESHSPVFSAIIPEALAKKTK**FSIQWYIKDLHKQFCCSPSRGR 270
           +  E+ S     +I E LAK  +   +  W I+ LHKQ C    R +
Sbjct: 746 EAGETQSQKTQKVIKENLAKAEQACLNTDWQIQSLHKQKCDDLQRNK 792


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,540,726
Number of Sequences: 219361
Number of extensions: 1311952
Number of successful extensions: 3901
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3900
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)