ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63g23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ019635.1| Triticum aestivum U2AF large subunit (U2AF65) mRNA, complete cds Length = 1786 Score = 749 bits (378), Expect = 0.0 Identities = 441/462 (95%) Strand = Plus / Plus Query: 91 acgtcagcgagggcgctcgccccgaggatgatacacatacacgtgaagagggattgtcta 150 |||||||||||| || |||||||||| |||||||||||| ||||||||||||||||| | Sbjct: 47 acgtcagcgaggccgtccgccccgagggtgatacacatacgcgtgaagagggattgtcaa 106 Query: 151 aatccagggatcgtgacagagaaaaagaaaaggacagggagcgccatagggaccgtgacc 210 ||||||||||||| |||||||||||||| ||||| | |||||||||||||||||||||| Sbjct: 107 aatccagggatcgagacagagaaaaagacaaggataaggagcgccatagggaccgtgaca 166 Query: 211 gagatagaggaagagacagagatcggggtcgggacagggatctagacaaggatcgggata 270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 167 gagatagaggaagagacagagatcggggtcgggacagggatctagacaaggatcgggaca 226 Query: 271 gggacaaggatcgggatcgtcaccaaaggcatcaccgtgagaaaagggagcaccgagacc 330 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 227 gggacaaggatcgggatcgtcaccaaaggcatcaccgtgacaaaagggagcaccgagacc 286 Query: 331 gtcctgatgatcacgatcgtcacagaagccgtgattctgaaaggagaagggaccgtgaga 390 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 287 gtcctgatgatcacgatcgtcacagaagccgtgattctgaaaggagaagggaccgcgaga 346 Query: 391 gagatggacatcacaggcatcgctctcgttcacggtctcgttcaaggggcagggatgatc 450 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 347 gagatggacatcgcaggcatcgctctcgttcacggtctcgttcaaggggcagggatgatc 406 Query: 451 acagatctcgatctcagtcaaaaagcaagcgagtcagtgggtttgacctgggaccaacag 510 |||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| Sbjct: 407 acagatctcgatctcattcaaaaagcaagcgagtcagtggattcgacctgggaccaacag 466 Query: 511 cacaatctgtagttcctcagttccctactattccaaccccaa 552 ||||||| ||| |||||||||||||||| ||||||||||||| Sbjct: 467 cacaatccgtacttcctcagttccctaccattccaaccccaa 508 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 39 cctcgacgcgagatggccgacgacaa 64 |||||||||||||||||||||||||| Sbjct: 1 cctcgacgcgagatggccgacgacaa 26
>dbj|AK066311.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013068A09, full insert sequence Length = 2841 Score = 176 bits (89), Expect = 6e-41 Identities = 250/302 (82%), Gaps = 5/302 (1%) Strand = Plus / Plus Query: 255 gacaaggatcgggatagggacaaggatcgggatcgtcaccaaaggcatcaccgtgagaaa 314 |||| |||| |||| |||||||||||||||||||| ||||| |||||||||||||| | | Sbjct: 269 gacagggatagggacagggacaaggatcgggatcgccaccataggcatcaccgtgaaaga 328 Query: 315 agggagcaccgagaccgtcctgatgatcacgatcgtcacagaagccgtgattctgaaagg 374 || || ||| |||| || |||||||||| ||||| |||||||||||||||||||||||| Sbjct: 329 agagaacacagagatcgctctgatgatcatgatcgccacagaagccgtgattctgaaagg 388 Query: 375 agaagggaccgtgagagagatggacatcacaggcatcgctctcgttcacggtctcgttca 434 ||||| |||| ||| | ||||| | || ||||||||| ||||| ||||| |||||||| Sbjct: 389 agaagagaccatgaacgggatgggcgtcgcaggcatcggtctcgctcacgctctcgttct 448 Query: 435 aggggcagggat----gatcacagatctcgatctcagtcaaaaagcaagcgagtcagtgg 490 |||||||||||| |||| || ||||| |||| ||||||||||||||||| ||||| Sbjct: 449 aggggcagggatcgcagatc-taggtctcgctctcgttcaaaaagcaagcgagttagtgg 507 Query: 491 gtttgacctgggaccaacagcacaatctgtagttcctcagttccctactattccaacccc 550 ||||| ||| || |||| ||| |||| ||||| || || ||| ||||||||||||| Sbjct: 508 atttgatatggcgcctccagctcaagctgtggttccacaatttcctgctattccaacccc 567 Query: 551 aa 552 || Sbjct: 568 aa 569 Score = 91.7 bits (46), Expect = 3e-15 Identities = 64/70 (91%) Strand = Plus / Plus Query: 168 agagaaaaagaaaaggacagggagcgccatagggaccgtgaccgagatagaggaagagac 227 ||||||||||| ||||||||||| ||||| |||||||||||| ||||| ||||||||||| Sbjct: 164 agagaaaaagacaaggacagggaacgccacagggaccgtgacagagatcgaggaagagac 223 Query: 228 agagatcggg 237 ||||||||| Sbjct: 224 cgagatcggg 233
>gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0064H09, complete sequence Length = 146742 Score = 119 bits (60), Expect = 1e-23 Identities = 105/120 (87%) Strand = Plus / Plus Query: 255 gacaaggatcgggatagggacaaggatcgggatcgtcaccaaaggcatcaccgtgagaaa 314 |||| |||| |||| |||||||||||||||||||| ||||| |||||||||||||| | | Sbjct: 20133 gacagggatagggacagggacaaggatcgggatcgccaccataggcatcaccgtgaaaga 20192 Query: 315 agggagcaccgagaccgtcctgatgatcacgatcgtcacagaagccgtgattctgaaagg 374 || || ||| |||| || |||||||||| ||||| |||||||||||||||||||||||| Sbjct: 20193 agagaacacagagatcgctctgatgatcatgatcgccacagaagccgtgattctgaaagg 20252 Score = 91.7 bits (46), Expect = 3e-15 Identities = 64/70 (91%) Strand = Plus / Plus Query: 168 agagaaaaagaaaaggacagggagcgccatagggaccgtgaccgagatagaggaagagac 227 ||||||||||| ||||||||||| ||||| |||||||||||| ||||| ||||||||||| Sbjct: 20028 agagaaaaagacaaggacagggaacgccacagggaccgtgacagagatcgaggaagagac 20087 Query: 228 agagatcggg 237 ||||||||| Sbjct: 20088 cgagatcggg 20097 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 404 caggcatcgctctcgttcacggtctcgttcaaggggcagggat 446 ||||||||| ||||| ||||| |||||||| |||||||||||| Sbjct: 20469 caggcatcggtctcgctcacgctctcgttctaggggcagggat 20511
>gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0082P17, complete sequence Length = 157539 Score = 119 bits (60), Expect = 1e-23 Identities = 105/120 (87%) Strand = Plus / Plus Query: 255 gacaaggatcgggatagggacaaggatcgggatcgtcaccaaaggcatcaccgtgagaaa 314 |||| |||| |||| |||||||||||||||||||| ||||| |||||||||||||| | | Sbjct: 127751 gacagggatagggacagggacaaggatcgggatcgccaccataggcatcaccgtgaaaga 127810 Query: 315 agggagcaccgagaccgtcctgatgatcacgatcgtcacagaagccgtgattctgaaagg 374 || || ||| |||| || |||||||||| ||||| |||||||||||||||||||||||| Sbjct: 127811 agagaacacagagatcgctctgatgatcatgatcgccacagaagccgtgattctgaaagg 127870 Score = 91.7 bits (46), Expect = 3e-15 Identities = 64/70 (91%) Strand = Plus / Plus Query: 168 agagaaaaagaaaaggacagggagcgccatagggaccgtgaccgagatagaggaagagac 227 ||||||||||| ||||||||||| ||||| |||||||||||| ||||| ||||||||||| Sbjct: 127646 agagaaaaagacaaggacagggaacgccacagggaccgtgacagagatcgaggaagagac 127705 Query: 228 agagatcggg 237 ||||||||| Sbjct: 127706 cgagatcggg 127715 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 404 caggcatcgctctcgttcacggtctcgttcaaggggcagggat 446 ||||||||| ||||| ||||| |||||||| |||||||||||| Sbjct: 128087 caggcatcggtctcgctcacgctctcgttctaggggcagggat 128129
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 119 bits (60), Expect = 1e-23 Identities = 105/120 (87%) Strand = Plus / Plus Query: 255 gacaaggatcgggatagggacaaggatcgggatcgtcaccaaaggcatcaccgtgagaaa 314 |||| |||| |||| |||||||||||||||||||| ||||| |||||||||||||| | | Sbjct: 26717188 gacagggatagggacagggacaaggatcgggatcgccaccataggcatcaccgtgaaaga 26717247 Query: 315 agggagcaccgagaccgtcctgatgatcacgatcgtcacagaagccgtgattctgaaagg 374 || || ||| |||| || |||||||||| ||||| |||||||||||||||||||||||| Sbjct: 26717248 agagaacacagagatcgctctgatgatcatgatcgccacagaagccgtgattctgaaagg 26717307 Score = 91.7 bits (46), Expect = 3e-15 Identities = 64/70 (91%) Strand = Plus / Plus Query: 168 agagaaaaagaaaaggacagggagcgccatagggaccgtgaccgagatagaggaagagac 227 ||||||||||| ||||||||||| ||||| |||||||||||| ||||| ||||||||||| Sbjct: 26717083 agagaaaaagacaaggacagggaacgccacagggaccgtgacagagatcgaggaagagac 26717142 Query: 228 agagatcggg 237 ||||||||| Sbjct: 26717143 cgagatcggg 26717152 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 404 caggcatcgctctcgttcacggtctcgttcaaggggcagggat 446 ||||||||| ||||| ||||| |||||||| |||||||||||| Sbjct: 26717524 caggcatcggtctcgctcacgctctcgttctaggggcagggat 26717566
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 119 bits (60), Expect = 1e-23 Identities = 105/120 (87%) Strand = Plus / Plus Query: 255 gacaaggatcgggatagggacaaggatcgggatcgtcaccaaaggcatcaccgtgagaaa 314 |||| |||| |||| |||||||||||||||||||| ||||| |||||||||||||| | | Sbjct: 27042738 gacagggatagggacagggacaaggatcgggatcgccaccataggcatcaccgtgaaaga 27042797 Query: 315 agggagcaccgagaccgtcctgatgatcacgatcgtcacagaagccgtgattctgaaagg 374 || || ||| |||| || |||||||||| ||||| |||||||||||||||||||||||| Sbjct: 27042798 agagaacacagagatcgctctgatgatcatgatcgccacagaagccgtgattctgaaagg 27042857 Score = 91.7 bits (46), Expect = 3e-15 Identities = 64/70 (91%) Strand = Plus / Plus Query: 168 agagaaaaagaaaaggacagggagcgccatagggaccgtgaccgagatagaggaagagac 227 ||||||||||| ||||||||||| ||||| |||||||||||| ||||| ||||||||||| Sbjct: 27042633 agagaaaaagacaaggacagggaacgccacagggaccgtgacagagatcgaggaagagac 27042692 Query: 228 agagatcggg 237 ||||||||| Sbjct: 27042693 cgagatcggg 27042702 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 404 caggcatcgctctcgttcacggtctcgttcaaggggcagggat 446 ||||||||| ||||| ||||| |||||||| |||||||||||| Sbjct: 27043074 caggcatcggtctcgctcacgctctcgttctaggggcagggat 27043116
>dbj|AK073768.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068H24, full insert sequence Length = 2016 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 362 tgattctgaaaggagaagggaccgtgagagagatggacatcacaggcatcgctctcg 418 |||||||||||||||||| |||||||| |||||||| || | ||||||||| ||||| Sbjct: 476 tgattctgaaaggagaagagaccgtgacagagatggtcaccgcaggcatcgatctcg 532
>dbj|AK059255.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-H08, full insert sequence Length = 2177 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 362 tgattctgaaaggagaagggaccgtgagagagatggacatcacaggcatcgctctcg 418 |||||||||||||||||| |||||||| |||||||| || | ||||||||| ||||| Sbjct: 475 tgattctgaaaggagaagagaccgtgacagagatggtcaccgcaggcatcgatctcg 531
>gb|AY106657.1| Zea mays PCO074093 mRNA sequence Length = 864 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 360 cgtgattctgaaaggagaagggaccgtgagagagatggacatcacaggcatcgctc 415 ||||||||||| |||||||| || ||||| |||||||| |||| ||||||||||| Sbjct: 637 cgtgattctgagaggagaagagatcgtgacagagatggtcatcgtaggcatcgctc 692
>gb|AY104538.1| Zea mays PCO122195 mRNA sequence Length = 1262 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 297 aggcatcaccgtgagaaaagggagcaccgagaccgtcctgatgatcac 344 |||||||||||||| | | |||| || ||||||||||||||||||||| Sbjct: 362 aggcatcaccgtgaaagacgggaacagcgagaccgtcctgatgatcac 409 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 416 tcgttcacggtctcgttcaagggg 439 |||||| ||||||||||||||||| Sbjct: 466 tcgttctcggtctcgttcaagggg 489
>emb|CR855994.1| Wallaby DNA sequence from clone MEKBa-69G12, complete sequence Length = 174698 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 170 agaaaaagaaaaggacagggag 191 |||||||||||||||||||||| Sbjct: 155124 agaaaaagaaaaggacagggag 155103
>gb|AC009464.8| Homo sapiens 12 BAC RP11-19E18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 146945 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 167 cagagaaaaagaaaaggacagg 188 |||||||||||||||||||||| Sbjct: 55729 cagagaaaaagaaaaggacagg 55750
>gb|BC082851.1| Xenopus laevis hypothetical LOC494751, mRNA (cDNA clone MGC:81632 IMAGE:6864111), complete cds Length = 7873 Score = 44.1 bits (22), Expect = 0.54 Identities = 37/42 (88%) Strand = Plus / Plus Query: 168 agagaaaaagaaaaggacagggagcgccatagggaccgtgac 209 ||||||| ||| | |||||||||||| |||||||||||||| Sbjct: 6856 agagaaagagagagggacagggagcgggatagggaccgtgac 6897
>ref|XM_656973.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4461.2), mRNA Length = 1572 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 gggaccgtgaccgagatagag 219 ||||||||||||||||||||| Sbjct: 1205 gggaccgtgaccgagatagag 1225
>gb|AC122746.7| Mus musculus chromosome 17, clone RP23-144A20, complete sequence Length = 218858 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 gacatcacaggcatcgctctc 417 ||||||||||||||||||||| Sbjct: 11485 gacatcacaggcatcgctctc 11465
>gb|AC154602.3| Mus musculus BAC clone RP23-343M11 from chromosome 17, complete sequence Length = 196564 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 gacatcacaggcatcgctctc 417 ||||||||||||||||||||| Sbjct: 184712 gacatcacaggcatcgctctc 184692
>gb|DQ388031.1| Aucoumea klaineana clone ak25 microsatellite sequence Length = 775 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 211 gagatagaggaagagacagagatcg 235 ||||||||| ||||||||||||||| Sbjct: 508 gagatagagaaagagacagagatcg 484
>gb|AC135862.4| Mus musculus BAC clone RP23-323B2 from chromosome 10, complete sequence Length = 203324 Score = 42.1 bits (21), Expect = 2.1 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 564 ttgtctggagactggggcacatgctgttc 592 |||||||||| |||||||||||||||||| Sbjct: 116745 ttgtctggag-ctggggcacatgctgttc 116718
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 cagagaaaaagaaaaggacag 187 ||||||||||||||||||||| Sbjct: 953163 cagagaaaaagaaaaggacag 953183
>dbj|AP004562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470F10 Length = 185294 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 cagagaaaaagaaaaggacag 187 ||||||||||||||||||||| Sbjct: 115901 cagagaaaaagaaaaggacag 115921
>dbj|AB024028.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K1G2 Length = 70952 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 atgctgttcatttgcatgttg 604 ||||||||||||||||||||| Sbjct: 4925 atgctgttcatttgcatgttg 4945
>gb|AC160543.13| Mus musculus chromosome 1, clone RP23-186L22, complete sequence Length = 212353 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 168 agagaaaaagaaaaggacagggag 191 ||||||||||||||||||| |||| Sbjct: 46196 agagaaaaagaaaaggacaaggag 46173
>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete sequence Length = 1507550 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 gacagagaaaaagaaaagga 184 |||||||||||||||||||| Sbjct: 237679 gacagagaaaaagaaaagga 237698
>gb|AC125253.9| Mus musculus chromosome 1, clone RP24-141C2, complete sequence Length = 144529 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 168 agagaaaaagaaaaggacagggag 191 ||||||||||||||||||| |||| Sbjct: 59576 agagaaaaagaaaaggacaaggag 59553
>gb|AC008255.9| Drosophila melanogaster clone BACR48D17, complete sequence Length = 183316 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 cagagaaaaagaaaaggaca 186 |||||||||||||||||||| Sbjct: 12540 cagagaaaaagaaaaggaca 12559
>ref|XM_424756.1| PREDICTED: Gallus gallus similar to Splicing factor, arginine/serine-rich 12 (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) (SR-related protein of 86 kDa) (LOC427168), mRNA Length = 2304 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 gacagagaaaaagaaaagga 184 |||||||||||||||||||| Sbjct: 1270 gacagagaaaaagaaaagga 1289
>ref|XM_416174.1| PREDICTED: Gallus gallus similar to down-regulated in metastasis (LOC417933), mRNA Length = 9393 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 caaaggcatcaccgtgagaa 313 |||||||||||||||||||| Sbjct: 6828 caaaggcatcaccgtgagaa 6809
>gb|AC158951.5| Mus musculus chromosome 8, clone RP23-265B11, complete sequence Length = 191700 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 574 actggggcacatgctgttca 593 |||||||||||||||||||| Sbjct: 142390 actggggcacatgctgttca 142371
>gb|AC024222.16| Homo sapiens 3 BAC RP11-282J12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 36195 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 505 caacagcacaatctgtagttcctc 528 ||||||||||||||| |||||||| Sbjct: 34761 caacagcacaatctgcagttcctc 34784
>gb|U23526.1| Caenorhabditis elegans cosmid C01C10, complete sequence Length = 22183 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 agagaaaaagaaaaggacag 187 |||||||||||||||||||| Sbjct: 16570 agagaaaaagaaaaggacag 16589
>ref|XM_505124.1| Yarrowia lipolytica CLIB122, YALI0F07557g predicted mRNA Length = 2172 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 204 cgtgaccgagatagaggaagagacagagatcg 235 ||||| |||||||||| | ||||||||||||| Sbjct: 1096 cgtgaacgagatagagaacgagacagagatcg 1127
>gb|AC126567.8| Homo sapiens 3 BAC RP11-656G9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 150746 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 gagatagaggaagagacaga 230 |||||||||||||||||||| Sbjct: 108691 gagatagaggaagagacaga 108672
>ref|XM_785222.1| PREDICTED: Strongylocentrotus purpuratus similar to Beta-amyloid-like protein precursor (LOC585391), mRNA Length = 1884 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 gagatagaggaagagacagagatc 234 ||||||||| |||||||||||||| Sbjct: 1393 gagatagagcaagagacagagatc 1416
>emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 57 Length = 199577 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 gtgacagagaaaaagaaaag 182 |||||||||||||||||||| Sbjct: 143473 gtgacagagaaaaagaaaag 143492
>emb|AL033545.2|ATF7K2 Arabidopsis thaliana DNA chromosome 4, BAC clone F7K2 (ESSA project) Length = 106702 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 gtgacagagaaaaagaaaag 182 |||||||||||||||||||| Sbjct: 94665 gtgacagagaaaaagaaaag 94684
>emb|BX005126.10| Zebrafish DNA sequence from clone CH211-129O9 in linkage group 5, complete sequence Length = 160487 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 tcgctctcgttcacggtctcgttc 433 ||||||||||||||||||| |||| Sbjct: 67772 tcgctctcgttcacggtctggttc 67749
>gb|AC091785.5| Genomic sequence for Mus musculus, clone RP23-349P1, complete sequence Length = 178271 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 tcaaggggcagggatgatca 451 |||||||||||||||||||| Sbjct: 126856 tcaaggggcagggatgatca 126837
>gb|AC010406.7| Homo sapiens chromosome 5 clone CTD-2154H6, complete sequence Length = 95089 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 598 catgttgagaatgaatgaat 617 |||||||||||||||||||| Sbjct: 92316 catgttgagaatgaatgaat 92335
>ref|XM_694616.1| PREDICTED: Danio rerio similar to RD RNA-binding protein (LOC571062), mRNA Length = 981 Score = 40.1 bits (20), Expect = 8.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 222 agagacagagatcggggtcgggacagggatctagacaaggatcgggat 269 |||||| ||||||| | ||||||||||||| ||||| ||| |||||| Sbjct: 238 agagaccgagatcgagaccgggacagggatcgagacagggaccgggat 285
>ref|XM_704613.1| PREDICTED: Danio rerio similar to splicing factor, arginine/serine-rich 7, transcript variant 9 (LOC573618), mRNA Length = 1418 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 410 tcgctctcgttcacggtctcgttc 433 ||||||||||||||||||| |||| Sbjct: 829 tcgctctcgttcacggtctggttc 852
>ref|XM_704612.1| PREDICTED: Danio rerio similar to splicing factor, arginine/serine-rich 7, transcript variant 8 (LOC573618), mRNA Length = 1369 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 410 tcgctctcgttcacggtctcgttc 433 ||||||||||||||||||| |||| Sbjct: 780 tcgctctcgttcacggtctggttc 803
>ref|XM_704611.1| PREDICTED: Danio rerio similar to splicing factor, arginine/serine-rich 7, transcript variant 7 (LOC573618), mRNA Length = 1312 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 410 tcgctctcgttcacggtctcgttc 433 ||||||||||||||||||| |||| Sbjct: 723 tcgctctcgttcacggtctggttc 746
>ref|XM_704610.1| PREDICTED: Danio rerio similar to splicing factor, arginine/serine-rich 7, transcript variant 6 (LOC573618), mRNA Length = 1328 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 410 tcgctctcgttcacggtctcgttc 433 ||||||||||||||||||| |||| Sbjct: 739 tcgctctcgttcacggtctggttc 762
>ref|XM_704609.1| PREDICTED: Danio rerio similar to splicing factor, arginine/serine-rich 7, transcript variant 5 (LOC573618), mRNA Length = 1437 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 410 tcgctctcgttcacggtctcgttc 433 ||||||||||||||||||| |||| Sbjct: 848 tcgctctcgttcacggtctggttc 871
>ref|XM_692974.1| PREDICTED: Danio rerio similar to splicing factor, arginine/serine-rich 7, transcript variant 1 (LOC573618), mRNA Length = 816 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 410 tcgctctcgttcacggtctcgttc 433 ||||||||||||||||||| |||| Sbjct: 720 tcgctctcgttcacggtctggttc 743
>ref|XM_704608.1| PREDICTED: Danio rerio similar to splicing factor, arginine/serine-rich 7, transcript variant 4 (LOC573618), mRNA Length = 1336 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 410 tcgctctcgttcacggtctcgttc 433 ||||||||||||||||||| |||| Sbjct: 747 tcgctctcgttcacggtctggttc 770
>ref|XM_704607.1| PREDICTED: Danio rerio similar to splicing factor, arginine/serine-rich 7, transcript variant 3 (LOC573618), mRNA Length = 1394 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 410 tcgctctcgttcacggtctcgttc 433 ||||||||||||||||||| |||| Sbjct: 805 tcgctctcgttcacggtctggttc 828
>ref|XM_704606.1| PREDICTED: Danio rerio similar to splicing factor, arginine/serine-rich 7, transcript variant 2 (LOC573618), mRNA Length = 1509 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 410 tcgctctcgttcacggtctcgttc 433 ||||||||||||||||||| |||| Sbjct: 920 tcgctctcgttcacggtctggttc 943
>gb|AC010706.8|AC010706 Drosophila melanogaster, chromosome X, region 13C-13E, BAC clone BACR36D15, complete sequence Length = 159513 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cagagaaaaagaaaaggaca 186 |||||||||||||||||||| Sbjct: 3843 cagagaaaaagaaaaggaca 3824
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 375 agaagggaccgtgagagagatgga 398 ||||||||||| |||||||||||| Sbjct: 17506188 agaagggaccgagagagagatgga 17506211
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 ggatcgtgacagagaaaaagaaaa 181 ||||||||||| |||||||||||| Sbjct: 13005340 ggatcgtgacatagaaaaagaaaa 13005363
>gb|AC010423.8| Homo sapiens chromosome 5 clone CTD-2193G5, complete sequence Length = 183787 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 598 catgttgagaatgaatgaat 617 |||||||||||||||||||| Sbjct: 117007 catgttgagaatgaatgaat 116988
>dbj|AP003763.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0531C01 Length = 158574 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 ggatcgtgacagagaaaaagaaaa 181 ||||||||||| |||||||||||| Sbjct: 44141 ggatcgtgacatagaaaaagaaaa 44164
>dbj|AP003619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0577H07 Length = 126757 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 ggatcgtgacagagaaaaagaaaa 181 ||||||||||| |||||||||||| Sbjct: 87717 ggatcgtgacatagaaaaagaaaa 87740
>gb|AC117729.9| Mus musculus chromosome 8, clone RP24-126M11, complete sequence Length = 193119 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 574 actggggcacatgctgttca 593 |||||||||||||||||||| Sbjct: 133360 actggggcacatgctgttca 133379
>gb|AC016950.8|AC016950 Homo sapiens 3 BAC RP11-239I11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159217 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 505 caacagcacaatctgtagttcctc 528 ||||||||||||||| |||||||| Sbjct: 158647 caacagcacaatctgcagttcctc 158624
>dbj|AK070901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073O19, full insert sequence Length = 457 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 375 agaagggaccgtgagagagatgga 398 ||||||||||| |||||||||||| Sbjct: 64 agaagggaccgagagagagatgga 41
>gb|AE003498.5| Drosophila melanogaster chromosome X, section 50 of 74 of the complete sequence Length = 341520 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cagagaaaaagaaaaggaca 186 |||||||||||||||||||| Sbjct: 303201 cagagaaaaagaaaaggaca 303182
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 375 agaagggaccgtgagagagatgga 398 ||||||||||| |||||||||||| Sbjct: 17460559 agaagggaccgagagagagatgga 17460582
>emb|AL731763.1|CNS07YQA Oryza sativa chromosome 12, . BAC OSJNBa0090O14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 129619 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 375 agaagggaccgtgagagagatgga 398 ||||||||||| |||||||||||| Sbjct: 26218 agaagggaccgagagagagatgga 26195
>gb|AC145933.3| Gallus gallus BAC clone CH261-41E11 from chromosome unknown, complete sequence Length = 209915 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 agagaaaaagaaaaggacag 187 |||||||||||||||||||| Sbjct: 91389 agagaaaaagaaaaggacag 91408
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 204 cgtgaccgagatagaggaagagacagagatcg 235 ||||| |||||||||| | ||||||||||||| Sbjct: 1090981 cgtgaacgagatagagaacgagacagagatcg 1091012
>emb|AL773527.8| Pig DNA sequence from clone XX-707F1, complete sequence Length = 137286 Score = 40.1 bits (20), Expect = 8.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 222 agagacagagatcggggtcgggacagggatctagacaaggatcgggat 269 |||||| ||||||| | ||||||||||||| ||||| ||| |||||| Sbjct: 16598 agagaccgagatcgagaccgggacagggatcgagacagggaccgggat 16645 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,005,331 Number of Sequences: 3902068 Number of extensions: 6005331 Number of successful extensions: 130475 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 130012 Number of HSP's gapped (non-prelim): 451 length of query: 622 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 599 effective length of database: 17,143,297,704 effective search space: 10268835324696 effective search space used: 10268835324696 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
