ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah63g16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK120928.1| Oryza sativa (japonica cultivar-group) cDNA clon... 394 e-106
2gb|AY112158.1| Zea mays CL4569_1 mRNA sequence 303 3e-79
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 115 2e-22
4gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome... 115 2e-22
5gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare str... 115 2e-22
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
7gb|DQ226829.1| Boechera divaricarpa isolate SLW-C-A05 mRNA sequence 54 5e-04
8gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 48 0.031
9gb|AC144541.12| Medicago truncatula clone mth2-28a1, complete se... 44 0.49
10gb|AY268139.1| Hordeum vulgare BAC 184G9, complete sequece 42 1.9
11gb|AC079841.10| Homo sapiens 3 BAC RP11-10G15 (Roswell Park Canc... 42 1.9
12dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
13dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
14dbj|AP007203.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
15ref|NM_001035931.1| Arabidopsis thaliana endopeptidase Clp AT1G0... 40 7.6
16ref|NM_100782.3| Arabidopsis thaliana endopeptidase Clp AT1G0913... 40 7.6
17gb|AC120420.11| Mus musculus chromosome 5, clone RP24-481P22, co... 40 7.6
18ref|NM_188892.2| Oryza sativa (japonica cultivar-group), mRNA 40 7.6
19ref|XM_507204.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 7.6
20gb|AC125346.4| Mus musculus BAC clone RP24-87B17 from chromosome... 40 7.6
21gb|AC118033.7| Mus musculus chromosome 14, clone RP23-472J4, com... 40 7.6
22gb|AC122172.30| Medicago truncatula clone mth2-27e7, complete se... 40 7.6
23emb|Y17872.1|EAY17872 Eubacterium acidaminophilum orfS, orfR, or... 40 7.6
24gb|AY136442.1| Arabidopsis thaliana ATP-dependent Clp protease p... 40 7.6
25ref|NM_059999.2| Caenorhabditis elegans T08G11.4 (T08G11.4) mRNA... 40 7.6
26dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
27emb|BX842538.1|CNS0ADRO Arabidopsis thaliana Full-length cDNA Co... 40 7.6
28emb|BX842534.1|CNS0ADQM Arabidopsis thaliana Full-length cDNA Co... 40 7.6
29emb|BX842529.1|CNS0ADG1 Arabidopsis thaliana Full-length cDNA Co... 40 7.6
30emb|BX842522.1|CNS0ACYL Arabidopsis thaliana Full-length cDNA Co... 40 7.6
31emb|BX842520.1|CNS0ACRW Arabidopsis thaliana Full-length cDNA Co... 40 7.6
32dbj|AK176771.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.6
33dbj|AK176714.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.6
34dbj|AK176592.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.6
35dbj|AK176591.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.6
36dbj|AK176445.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.6
37dbj|AK175935.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.6
38dbj|AK175858.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.6
39dbj|AK175857.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.6
40dbj|AK175767.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.6
41dbj|AK175337.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.6
42dbj|AK175317.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.6
43dbj|AK175123.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.6
44dbj|AP003913.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
45dbj|AK073703.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
46dbj|AK070742.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
47dbj|AK067572.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
48gb|BT002132.1| Arabidopsis thaliana ATP-dependent Clp protease p... 40 7.6
49dbj|AK061683.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
50emb|Z80220.1|CET08G11 Caenorhabditis elegans Cosmid T08G11, comp... 40 7.6 
>dbj|AK120928.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035P13, full
            insert sequence
          Length = 4399

 Score =  394 bits (199), Expect = e-106
 Identities = 286/315 (90%)
 Strand = Plus / Plus

                                                                        
Query: 5    aaacgatatatgtttccccatgccaaagctttgattcagcaacctcgtattccttcatat 64
            ||||| |||||||| || |||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 3460 aaacgctatatgttccctcatgccaaagctatgattcagcaacctcgtatcccttcatat 3519

                                                                        
Query: 65   gggatgatgcaagcctctgatgttgttattcgtgcgaaagaggtcgtgcacaacaggaac 124
            || ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 3520 ggaatgatgcaagcatctgatgttgttattcgggcgaaagaggttgtgcacaacaggaac 3579

                                                                        
Query: 125  accttggtcaaacttttagcaaggcacactggaaatccaccggagaaaatagacaaggtg 184
            ||||| || | |||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct: 3580 accttagtgagacttttagcaaggcacacggggaatccaccagagaaaatagacaaggtg 3639

                                                                        
Query: 185  atgagaggaccgttttatatggactctttgaaagccaaggagtttggggtaattgacaag 244
            ||||||||||| ||||||||||| || ||||| || ||||||||||| || |||||||||
Sbjct: 3640 atgagaggaccattttatatggattccttgaaggcaaaggagtttggtgtcattgacaag 3699

                                                                        
Query: 245  atcctttggcgcggtcaggagaagtacatgtcggacatgctctcccctgaggattgggac 304
            ||||||||||| ||||| |||||||||||| | |||||||||||||| ||||| ||||||
Sbjct: 3700 atcctttggcgtggtcaagagaagtacatggctgacatgctctccccagaggaatgggac 3759

                           
Query: 305  aaggttgctggagtc 319
            || ||||||||||||
Sbjct: 3760 aaagttgctggagtc 3774
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>gb|AY112158.1| Zea mays CL4569_1 mRNA sequence
          Length = 1108

 Score =  303 bits (153), Expect = 3e-79
 Identities = 216/237 (91%)
 Strand = Plus / Plus

                                                                       
Query: 83  gatgttgttattcgtgcgaaagaggtcgtgcacaacaggaacaccttggtcaaactttta 142
           ||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 390 gatgttgttattcgtgcaaaggaggttgtgcacaacaggaacacattggtcaaactttta 449

                                                                       
Query: 143 gcaaggcacactggaaatccaccggagaaaatagacaaggtgatgagaggaccgttttat 202
           |||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||| 
Sbjct: 450 gcaaggcatactggaaatccaccagagaaaatagacaaggtaatgagaggaccattttac 509

                                                                       
Query: 203 atggactctttgaaagccaaggagtttggggtaattgacaagatcctttggcgcggtcag 262
           |||||||| ||||| || ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 510 atggactccttgaaggcaaaggagtttggagtcattgacaagatcctttggcgcggtcag 569

                                                                    
Query: 263 gagaagtacatgtcggacatgctctcccctgaggattgggacaaggttgctggagtc 319
           |||||||||||| | |||||||||||||| || || |||||||| ||||| ||||||
Sbjct: 570 gagaagtacatggctgacatgctctccccagatgagtgggacaaagttgccggagtc 626
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  115 bits (58), Expect = 2e-22
 Identities = 73/78 (93%)
 Strand = Plus / Minus

                                                                            
Query: 31       agctttgattcagcaacctcgtattccttcatatgggatgatgcaagcctctgatgttgt 90
                |||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 12830054 agctatgattcagcaacctcgtatcccttcatatggaatgatgcaagcatctgatgttgt 12829995

                                  
Query: 91       tattcgtgcgaaagaggt 108
                |||||| |||||||||||
Sbjct: 12829994 tattcgggcgaaagaggt 12829977



 Score =  103 bits (52), Expect = 6e-19
 Identities = 76/84 (90%)
 Strand = Plus / Minus

                                                                            
Query: 161      ccaccggagaaaatagacaaggtgatgagaggaccgttttatatggactctttgaaagcc 220
                ||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||| || 
Sbjct: 12829699 ccaccagagaaaatagacaaggtgatgagaggaccattttatatggattccttgaaggca 12829640

                                        
Query: 221      aaggagtttggggtaattgacaag 244
                ||||||||||| || |||||||||
Sbjct: 12829639 aaggagtttggtgtcattgacaag 12829616



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                            
Query: 243      agatcctttggcgcggtcaggagaagtacatgtcggacatgctctcccctgaggattggg 302
                ||||||||||||| ||||| |||||||||||| | |||||||||||||| ||||| ||||
Sbjct: 12829370 agatcctttggcgtggtcaagagaagtacatggctgacatgctctccccagaggaatggg 12829311

                                 
Query: 303      acaaggttgctggagtc 319
                |||| ||||||||||||
Sbjct: 12829310 acaaagttgctggagtc 12829294



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                                 
Query: 105      aggtcgtgcacaacaggaacaccttggtcaaacttttagcaaggcacac 153
                |||| |||||||||||||||||||| || | ||||||||||||||||||
Sbjct: 12829834 aggttgtgcacaacaggaacaccttagtgagacttttagcaaggcacac 12829786
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>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06,
             complete sequence
          Length = 132243

 Score =  115 bits (58), Expect = 2e-22
 Identities = 73/78 (93%)
 Strand = Plus / Minus

                                                                         
Query: 31    agctttgattcagcaacctcgtattccttcatatgggatgatgcaagcctctgatgttgt 90
             |||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 68270 agctatgattcagcaacctcgtatcccttcatatggaatgatgcaagcatctgatgttgt 68211

                               
Query: 91    tattcgtgcgaaagaggt 108
             |||||| |||||||||||
Sbjct: 68210 tattcgggcgaaagaggt 68193



 Score =  103 bits (52), Expect = 6e-19
 Identities = 76/84 (90%)
 Strand = Plus / Minus

                                                                         
Query: 161   ccaccggagaaaatagacaaggtgatgagaggaccgttttatatggactctttgaaagcc 220
             ||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||| || 
Sbjct: 67915 ccaccagagaaaatagacaaggtgatgagaggaccattttatatggattccttgaaggca 67856

                                     
Query: 221   aaggagtttggggtaattgacaag 244
             ||||||||||| || |||||||||
Sbjct: 67855 aaggagtttggtgtcattgacaag 67832



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                         
Query: 243   agatcctttggcgcggtcaggagaagtacatgtcggacatgctctcccctgaggattggg 302
             ||||||||||||| ||||| |||||||||||| | |||||||||||||| ||||| ||||
Sbjct: 67586 agatcctttggcgtggtcaagagaagtacatggctgacatgctctccccagaggaatggg 67527

                              
Query: 303   acaaggttgctggagtc 319
             |||| ||||||||||||
Sbjct: 67526 acaaagttgctggagtc 67510



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                              
Query: 105   aggtcgtgcacaacaggaacaccttggtcaaacttttagcaaggcacac 153
             |||| |||||||||||||||||||| || | ||||||||||||||||||
Sbjct: 68050 aggttgtgcacaacaggaacaccttagtgagacttttagcaaggcacac 68002
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>gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0094H06, from chromosome 3, complete sequence
          Length = 118075

 Score =  115 bits (58), Expect = 2e-22
 Identities = 73/78 (93%)
 Strand = Plus / Plus

                                                                          
Query: 31     agctttgattcagcaacctcgtattccttcatatgggatgatgcaagcctctgatgttgt 90
              |||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 109455 agctatgattcagcaacctcgtatcccttcatatggaatgatgcaagcatctgatgttgt 109514

                                
Query: 91     tattcgtgcgaaagaggt 108
              |||||| |||||||||||
Sbjct: 109515 tattcgggcgaaagaggt 109532



 Score =  103 bits (52), Expect = 6e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                          
Query: 161    ccaccggagaaaatagacaaggtgatgagaggaccgttttatatggactctttgaaagcc 220
              ||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||| || 
Sbjct: 109810 ccaccagagaaaatagacaaggtgatgagaggaccattttatatggattccttgaaggca 109869

                                      
Query: 221    aaggagtttggggtaattgacaag 244
              ||||||||||| || |||||||||
Sbjct: 109870 aaggagtttggtgtcattgacaag 109893



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                          
Query: 243    agatcctttggcgcggtcaggagaagtacatgtcggacatgctctcccctgaggattggg 302
              ||||||||||||| ||||| |||||||||||| | |||||||||||||| ||||| ||||
Sbjct: 110139 agatcctttggcgtggtcaagagaagtacatggctgacatgctctccccagaggaatggg 110198

                               
Query: 303    acaaggttgctggagtc 319
              |||| ||||||||||||
Sbjct: 110199 acaaagttgctggagtc 110215



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                               
Query: 105    aggtcgtgcacaacaggaacaccttggtcaaacttttagcaaggcacac 153
              |||| |||||||||||||||||||| || | ||||||||||||||||||
Sbjct: 109675 aggttgtgcacaacaggaacaccttagtgagacttttagcaaggcacac 109723
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  115 bits (58), Expect = 2e-22
 Identities = 73/78 (93%)
 Strand = Plus / Minus

                                                                            
Query: 31       agctttgattcagcaacctcgtattccttcatatgggatgatgcaagcctctgatgttgt 90
                |||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 12826817 agctatgattcagcaacctcgtatcccttcatatggaatgatgcaagcatctgatgttgt 12826758

                                  
Query: 91       tattcgtgcgaaagaggt 108
                |||||| |||||||||||
Sbjct: 12826757 tattcgggcgaaagaggt 12826740



 Score =  103 bits (52), Expect = 6e-19
 Identities = 76/84 (90%)
 Strand = Plus / Minus

                                                                            
Query: 161      ccaccggagaaaatagacaaggtgatgagaggaccgttttatatggactctttgaaagcc 220
                ||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||| || 
Sbjct: 12826462 ccaccagagaaaatagacaaggtgatgagaggaccattttatatggattccttgaaggca 12826403

                                        
Query: 221      aaggagtttggggtaattgacaag 244
                ||||||||||| || |||||||||
Sbjct: 12826402 aaggagtttggtgtcattgacaag 12826379



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                            
Query: 243      agatcctttggcgcggtcaggagaagtacatgtcggacatgctctcccctgaggattggg 302
                ||||||||||||| ||||| |||||||||||| | |||||||||||||| ||||| ||||
Sbjct: 12826133 agatcctttggcgtggtcaagagaagtacatggctgacatgctctccccagaggaatggg 12826074

                                 
Query: 303      acaaggttgctggagtc 319
                |||| ||||||||||||
Sbjct: 12826073 acaaagttgctggagtc 12826057



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                                 
Query: 105      aggtcgtgcacaacaggaacaccttggtcaaacttttagcaaggcacac 153
                |||| |||||||||||||||||||| || | ||||||||||||||||||
Sbjct: 12826597 aggttgtgcacaacaggaacaccttagtgagacttttagcaaggcacac 12826549
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>gb|DQ226829.1| Boechera divaricarpa isolate SLW-C-A05 mRNA sequence
          Length = 672

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 227 tttggggtaattgacaagatcctttggcgcggtca 261
           |||||||| ||||||||||| ||||||||||||||
Sbjct: 290 tttggggtcattgacaagattctttggcgcggtca 324



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 71/87 (81%)
 Strand = Plus / Plus

                                                                       
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgcaagcctct 82
           ||||| |||||  |||| |||||||||||| | ||||| | |||| ||||||  |||  |
Sbjct: 86  catgctaaagcaatgatccagcaacctcgtgtgccttcttctgggttgatgcctgccagt 145

                                      
Query: 83  gatgttgttattcgtgcgaaagaggtc 109
           |||||  |||||||||| |||||||||
Sbjct: 146 gatgtccttattcgtgccaaagaggtc 172
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>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 527   tattaagttagtataaattttata 550
             ||||||||||||||||||||||||
Sbjct: 62979 tattaagttagtataaattttata 63002
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>gb|AC144541.12| Medicago truncatula clone mth2-28a1, complete sequence
          Length = 123800

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 243   agatcctttggcgcggtcaggagaag 268
             |||| |||||||||||||||||||||
Sbjct: 94271 agattctttggcgcggtcaggagaag 94246
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>gb|AY268139.1| Hordeum vulgare BAC 184G9, complete sequece
          Length = 120562

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 530   taagttagtataaattttata 550
             |||||||||||||||||||||
Sbjct: 40576 taagttagtataaattttata 40556
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>gb|AC079841.10| Homo sapiens 3 BAC RP11-10G15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167865

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 528    attaagttagtataaatttta 548
              |||||||||||||||||||||
Sbjct: 160607 attaagttagtataaatttta 160627
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 496      ctctgccctaaaataagtgtagcaa 520
                ||||| |||||||||||||||||||
Sbjct: 26297544 ctctgtcctaaaataagtgtagcaa 26297568
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>dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:P0491E01
          Length = 136150

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 496   ctctgccctaaaataagtgtagcaa 520
             ||||| |||||||||||||||||||
Sbjct: 29896 ctctgtcctaaaataagtgtagcaa 29920
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>dbj|AP007203.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0012J10
          Length = 132375

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 496    ctctgccctaaaataagtgtagcaa 520
              ||||| |||||||||||||||||||
Sbjct: 120385 ctctgtcctaaaataagtgtagcaa 120409
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>ref|NM_001035931.1| Arabidopsis thaliana endopeptidase Clp AT1G09130 transcript variant
           AT1G09130.2 mRNA, complete cds
          Length = 1180

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgc 74
           |||||||||||  ||||||||||||| ||| | ||||| | |||| ||||||
Sbjct: 732 catgccaaagcgatgattcagcaaccacgtgtaccttcttctgggttgatgc 783
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>ref|NM_100782.3| Arabidopsis thaliana endopeptidase Clp AT1G09130 transcript variant
           AT1G09130.1 mRNA, complete cds
          Length = 1356

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgc 74
           |||||||||||  ||||||||||||| ||| | ||||| | |||| ||||||
Sbjct: 720 catgccaaagcgatgattcagcaaccacgtgtaccttcttctgggttgatgc 771
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>gb|AC120420.11| Mus musculus chromosome 5, clone RP24-481P22, complete sequence
          Length = 213649

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 518   caaatttagtattaagttagtataaatt 545
             |||||||||||| |||||||||| ||||
Sbjct: 80343 caaatttagtatcaagttagtatcaatt 80370
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>ref|NM_188892.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3158

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  accgttttatatggactctt 212
            ||||||||||||||||||||
Sbjct: 2984 accgttttatatggactctt 3003
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>ref|XM_507204.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1484_G09.129-1
            mRNA
          Length = 3539

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  accgttttatatggactctt 212
            ||||||||||||||||||||
Sbjct: 3249 accgttttatatggactctt 3268
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>gb|AC125346.4| Mus musculus BAC clone RP24-87B17 from chromosome 5, complete sequence
          Length = 187912

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 518    caaatttagtattaagttagtataaatt 545
              |||||||||||| |||||||||| ||||
Sbjct: 113050 caaatttagtatcaagttagtatcaatt 113023
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>gb|AC118033.7| Mus musculus chromosome 14, clone RP23-472J4, complete sequence
          Length = 178111

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    tacctagttaggcctttgag 381
              ||||||||||||||||||||
Sbjct: 139374 tacctagttaggcctttgag 139393
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>gb|AC122172.30| Medicago truncatula clone mth2-27e7, complete sequence
          Length = 109532

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 506   aaataagtgtagcaaattta 525
             ||||||||||||||||||||
Sbjct: 88500 aaataagtgtagcaaattta 88519
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>emb|Y17872.1|EAY17872 Eubacterium acidaminophilum orfS, orfR, orfX, grdG and grdF genes
          Length = 5160

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 312 ctggagtccgaggccccggt 331
           ||||||||||||||||||||
Sbjct: 992 ctggagtccgaggccccggt 973
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>gb|AY136442.1| Arabidopsis thaliana ATP-dependent Clp protease proteolytic subunit
           (ClpR3), putative (At1g09130) mRNA, complete cds
          Length = 1246

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgc 74
           |||||||||||  ||||||||||||| ||| | ||||| | |||| ||||||
Sbjct: 719 catgccaaagcgatgattcagcaaccacgtgtaccttcttctgggttgatgc 770
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>ref|NM_059999.2| Caenorhabditis elegans T08G11.4 (T08G11.4) mRNA, complete cds
          Length = 1878

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  tttgaaagccaaggagtttg 230
            ||||||||||||||||||||
Sbjct: 1524 tttgaaagccaaggagtttg 1543
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 193      accgttttatatggactctt 212
                ||||||||||||||||||||
Sbjct: 16957759 accgttttatatggactctt 16957740
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>emb|BX842538.1|CNS0ADRO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB46ZF07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1235

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgc 74
           |||||||||||  ||||||||||||| ||| | ||||| | |||| ||||||
Sbjct: 712 catgccaaagcgatgattcagcaaccacgtgtaccttcttctgggttgatgc 763
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>emb|BX842534.1|CNS0ADQM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB46ZE07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1236

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgc 74
           |||||||||||  ||||||||||||| ||| | ||||| | |||| ||||||
Sbjct: 712 catgccaaagcgatgattcagcaaccacgtgtaccttcttctgggttgatgc 763
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>emb|BX842529.1|CNS0ADG1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB72ZD03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1248

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgc 74
           |||||||||||  ||||||||||||| ||| | ||||| | |||| ||||||
Sbjct: 712 catgccaaagcgatgattcagcaaccacgtgtaccttcttctgggttgatgc 763
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>emb|BX842522.1|CNS0ACYL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS11ZB08 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 757

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgc 74
           |||||||||||  ||||||||||||| ||| | ||||| | |||| ||||||
Sbjct: 187 catgccaaagcgatgattcagcaaccacgtgtaccttcttctgggttgatgc 238
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>emb|BX842520.1|CNS0ACRW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS71ZG02 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1189

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgc 74
           |||||||||||  ||||||||||||| ||| | ||||| | |||| ||||||
Sbjct: 689 catgccaaagcgatgattcagcaaccacgtgtaccttcttctgggttgatgc 740
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>dbj|AK176771.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL25-32-B01
          Length = 1256

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgc 74
           |||||||||||  ||||||||||||| ||| | ||||| | |||| ||||||
Sbjct: 724 catgccaaagcgatgattcagcaaccacgtgtaccttcttctgggttgatgc 775
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>dbj|AK176714.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL25-25-N08
          Length = 1301

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgc 74
           |||||||||||  ||||||||||||| ||| | ||||| | |||| ||||||
Sbjct: 720 catgccaaagcgatgattcagcaaccacgtgtaccttcttctgggttgatgc 771
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>dbj|AK176592.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL25-11-P03
          Length = 1309

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgc 74
           |||||||||||  ||||||||||||| ||| | ||||| | |||| ||||||
Sbjct: 732 catgccaaagcgatgattcagcaaccacgtgtaccttcttctgggttgatgc 783
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>dbj|AK176591.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL25-11-N19
          Length = 1306

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgc 74
           |||||||||||  ||||||||||||| ||| | ||||| | |||| ||||||
Sbjct: 719 catgccaaagcgatgattcagcaaccacgtgtaccttcttctgggttgatgc 770
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>dbj|AK176445.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL24-21-F12
          Length = 1310

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgc 74
           |||||||||||  ||||||||||||| ||| | ||||| | |||| ||||||
Sbjct: 723 catgccaaagcgatgattcagcaaccacgtgtaccttcttctgggttgatgc 774
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>dbj|AK175935.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           partial cds, clone: RAFL22-61-D22
          Length = 1225

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgc 74
           |||||||||||  ||||||||||||| ||| | ||||| | |||| ||||||
Sbjct: 639 catgccaaagcgatgattcagcaaccacgtgtaccttcttctgggttgatgc 690
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>dbj|AK175858.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL22-48-B21
          Length = 1317

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgc 74
           |||||||||||  ||||||||||||| ||| | ||||| | |||| ||||||
Sbjct: 720 catgccaaagcgatgattcagcaaccacgtgtaccttcttctgggttgatgc 771
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>dbj|AK175857.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL22-48-A06
          Length = 1317

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgc 74
           |||||||||||  ||||||||||||| ||| | ||||| | |||| ||||||
Sbjct: 720 catgccaaagcgatgattcagcaaccacgtgtaccttcttctgggttgatgc 771
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>dbj|AK175767.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL22-33-L03
          Length = 1257

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgc 74
           |||||||||||  ||||||||||||| ||| | ||||| | |||| ||||||
Sbjct: 719 catgccaaagcgatgattcagcaaccacgtgtaccttcttctgggttgatgc 770
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>dbj|AK175337.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL21-78-C11
          Length = 1258

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgc 74
           |||||||||||  ||||||||||||| ||| | ||||| | |||| ||||||
Sbjct: 719 catgccaaagcgatgattcagcaaccacgtgtaccttcttctgggttgatgc 770
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>dbj|AK175317.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL21-76-C04
          Length = 1301

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgc 74
           |||||||||||  ||||||||||||| ||| | ||||| | |||| ||||||
Sbjct: 720 catgccaaagcgatgattcagcaaccacgtgtaccttcttctgggttgatgc 771
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>dbj|AK175123.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL21-53-J08
          Length = 1301

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgc 74
           |||||||||||  ||||||||||||| ||| | ||||| | |||| ||||||
Sbjct: 724 catgccaaagcgatgattcagcaaccacgtgtaccttcttctgggttgatgc 775
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>dbj|AP003913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1484_G09
          Length = 124695

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    accgttttatatggactctt 212
              ||||||||||||||||||||
Sbjct: 104770 accgttttatatggactctt 104751
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>dbj|AK073703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055B18, full
            insert sequence
          Length = 3538

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  accgttttatatggactctt 212
            ||||||||||||||||||||
Sbjct: 3248 accgttttatatggactctt 3267
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>dbj|AK070742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061C12, full
            insert sequence
          Length = 4317

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  accgttttatatggactctt 212
            ||||||||||||||||||||
Sbjct: 4150 accgttttatatggactctt 4169
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>dbj|AK067572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108G24, full
            insert sequence
          Length = 3158

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  accgttttatatggactctt 212
            ||||||||||||||||||||
Sbjct: 2984 accgttttatatggactctt 3003
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>gb|BT002132.1| Arabidopsis thaliana ATP-dependent Clp protease proteolytic subunit
           (ClpR3), putative (At1g09130) mRNA, complete cds
          Length = 1127

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 23  catgccaaagctttgattcagcaacctcgtattccttcatatgggatgatgc 74
           |||||||||||  ||||||||||||| ||| | ||||| | |||| ||||||
Sbjct: 682 catgccaaagcgatgattcagcaaccacgtgtaccttcttctgggttgatgc 733
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>dbj|AK061683.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-A07, full
            insert sequence
          Length = 1704

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  accgttttatatggactctt 212
            ||||||||||||||||||||
Sbjct: 1540 accgttttatatggactctt 1559
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>emb|Z80220.1|CET08G11 Caenorhabditis elegans Cosmid T08G11, complete sequence
          Length = 30919

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 211  tttgaaagccaaggagtttg 230
            ||||||||||||||||||||
Sbjct: 7109 tttgaaagccaaggagtttg 7090


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,344,660
Number of Sequences: 3902068
Number of extensions: 4344660
Number of successful extensions: 74704
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74443
Number of HSP's gapped (non-prelim): 261
length of query: 562
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 539
effective length of database: 17,143,297,704
effective search space: 9240237462456
effective search space used: 9240237462456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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