Clone Name | bah63g15 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_189108.2| Oryza sativa (japonica cultivar-group), mRNA Length = 934 Score = 305 bits (154), Expect = 7e-80 Identities = 235/262 (89%) Strand = Plus / Plus Query: 210 gccggcgcggccaagaacatcgaggtggaggtagacaagccgctcggcctcacccttggc 269 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct: 212 gccggcgcggcgaagaacatcgaggtggaggtcgacaagccgctcggcctcaccctcggc 271 Query: 270 cagaagtccggcggcggcgtcgtcatcaccggtgtggagtccggagggaatgcagcaaga 329 |||||| |||||||||||||||||||||||| |||||| || |||||||| || |||||| Sbjct: 272 cagaagaccggcggcggcgtcgtcatcaccgctgtggattctggagggaacgcggcaaga 331 Query: 330 gcagggctcaagtcgggtgaccaagtgctctacacaagcagcttcttcggtgatgagttg 389 ||||| || || || |||||||| |||||||||||||| |||||||| || ||||| | Sbjct: 332 gcaggcctgaaatcaggtgaccaggtgctctacacaagtagcttctttggagatgaacta 391 Query: 390 tggccggcagacaagctgggattcaccaagacagccatccaagcaaagccagactctgta 449 ||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 392 tggcctgcagataagctggggttcaccaagacagccatccaggcaaagccagactctgtc 451 Query: 450 tactttgtagtaagcaggggtg 471 |||||||| || |||||||||| Sbjct: 452 tactttgtggttagcaggggtg 473
>ref|XM_507141.1| PREDICTED Oryza sativa (japonica cultivar-group), P0577B11.138 mRNA Length = 1003 Score = 305 bits (154), Expect = 7e-80 Identities = 235/262 (89%) Strand = Plus / Plus Query: 210 gccggcgcggccaagaacatcgaggtggaggtagacaagccgctcggcctcacccttggc 269 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct: 242 gccggcgcggcgaagaacatcgaggtggaggtcgacaagccgctcggcctcaccctcggc 301 Query: 270 cagaagtccggcggcggcgtcgtcatcaccggtgtggagtccggagggaatgcagcaaga 329 |||||| |||||||||||||||||||||||| |||||| || |||||||| || |||||| Sbjct: 302 cagaagaccggcggcggcgtcgtcatcaccgctgtggattctggagggaacgcggcaaga 361 Query: 330 gcagggctcaagtcgggtgaccaagtgctctacacaagcagcttcttcggtgatgagttg 389 ||||| || || || |||||||| |||||||||||||| |||||||| || ||||| | Sbjct: 362 gcaggcctgaaatcaggtgaccaggtgctctacacaagtagcttctttggagatgaacta 421 Query: 390 tggccggcagacaagctgggattcaccaagacagccatccaagcaaagccagactctgta 449 ||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 422 tggcctgcagataagctggggttcaccaagacagccatccaggcaaagccagactctgtc 481 Query: 450 tactttgtagtaagcaggggtg 471 |||||||| || |||||||||| Sbjct: 482 tactttgtggttagcaggggtg 503
>dbj|AK070227.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041B21, full insert sequence Length = 934 Score = 305 bits (154), Expect = 7e-80 Identities = 235/262 (89%) Strand = Plus / Plus Query: 210 gccggcgcggccaagaacatcgaggtggaggtagacaagccgctcggcctcacccttggc 269 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct: 212 gccggcgcggcgaagaacatcgaggtggaggtcgacaagccgctcggcctcaccctcggc 271 Query: 270 cagaagtccggcggcggcgtcgtcatcaccggtgtggagtccggagggaatgcagcaaga 329 |||||| |||||||||||||||||||||||| |||||| || |||||||| || |||||| Sbjct: 272 cagaagaccggcggcggcgtcgtcatcaccgctgtggattctggagggaacgcggcaaga 331 Query: 330 gcagggctcaagtcgggtgaccaagtgctctacacaagcagcttcttcggtgatgagttg 389 ||||| || || || |||||||| |||||||||||||| |||||||| || ||||| | Sbjct: 332 gcaggcctgaaatcaggtgaccaggtgctctacacaagtagcttctttggagatgaacta 391 Query: 390 tggccggcagacaagctgggattcaccaagacagccatccaagcaaagccagactctgta 449 ||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 392 tggcctgcagataagctggggttcaccaagacagccatccaggcaaagccagactctgtc 451 Query: 450 tactttgtagtaagcaggggtg 471 |||||||| || |||||||||| Sbjct: 452 tactttgtggttagcaggggtg 473
>dbj|AK060121.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-F09, full insert sequence Length = 1003 Score = 305 bits (154), Expect = 7e-80 Identities = 235/262 (89%) Strand = Plus / Plus Query: 210 gccggcgcggccaagaacatcgaggtggaggtagacaagccgctcggcctcacccttggc 269 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct: 242 gccggcgcggcgaagaacatcgaggtggaggtcgacaagccgctcggcctcaccctcggc 301 Query: 270 cagaagtccggcggcggcgtcgtcatcaccggtgtggagtccggagggaatgcagcaaga 329 |||||| |||||||||||||||||||||||| |||||| || |||||||| || |||||| Sbjct: 302 cagaagaccggcggcggcgtcgtcatcaccgctgtggattctggagggaacgcggcaaga 361 Query: 330 gcagggctcaagtcgggtgaccaagtgctctacacaagcagcttcttcggtgatgagttg 389 ||||| || || || |||||||| |||||||||||||| |||||||| || ||||| | Sbjct: 362 gcaggcctgaaatcaggtgaccaggtgctctacacaagtagcttctttggagatgaacta 421 Query: 390 tggccggcagacaagctgggattcaccaagacagccatccaagcaaagccagactctgta 449 ||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 422 tggcctgcagataagctggggttcaccaagacagccatccaggcaaagccagactctgtc 481 Query: 450 tactttgtagtaagcaggggtg 471 |||||||| || |||||||||| Sbjct: 482 tactttgtggttagcaggggtg 503
>gb|AY106565.1| Zea mays PCO096548 mRNA sequence Length = 1026 Score = 176 bits (89), Expect = 4e-41 Identities = 212/253 (83%) Strand = Plus / Plus Query: 219 gccaagaacatcgaggtggaggtagacaagccgctcggcctcacccttggccagaagtcc 278 ||||||||||||||||||||||| || |||||||| ||| | || | ||||||||| || Sbjct: 315 gccaagaacatcgaggtggaggtcgagaagccgcttggcttagccttgggccagaagccc 374 Query: 279 ggcggcggcgtcgtcatcaccggtgtggagtccggagggaatgcagcaagagcagggctc 338 || || |||||||||||||| ||||||||| |||||||||||||| ||||| || || Sbjct: 375 ggtggtggcgtcgtcatcacttctgtggagtctggagggaatgcagccagagccggtctg 434 Query: 339 aagtcgggtgaccaagtgctctacacaagcagcttcttcggtgatgagttgtggccggca 398 || | || ||||| || || |||||||||||||||||||| || ||| ||||||| || Sbjct: 435 aaaaccggggaccaggtcctgtacacaagcagcttcttcggagacgagctgtggcctgcg 494 Query: 399 gacaagctgggattcaccaagacagccatccaagcaaagccagactctgtatactttgta 458 || ||||| || ||||||||||||||||||||||| ||| ||||||| || ||||| || Sbjct: 495 gataagcttgggttcaccaagacagccatccaagcgaagtcagactccgtctacttcgtc 554 Query: 459 gtaagcaggggtg 471 || |||||||||| Sbjct: 555 gtgagcaggggtg 567 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 115 agaagactgccttccatggggt 136 |||||||||||||||||||||| Sbjct: 205 agaagactgccttccatggggt 226
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 155 bits (78), Expect = 2e-34 Identities = 144/166 (86%) Strand = Plus / Plus Query: 302 tgtggagtccggagggaatgcagcaagagcagggctcaagtcgggtgaccaagtgctcta 361 |||||| || |||||||| || ||||||||||| || || || |||||||| |||||||| Sbjct: 3689221 tgtggattctggagggaacgcggcaagagcaggcctgaaatcaggtgaccaggtgctcta 3689280 Query: 362 cacaagcagcttcttcggtgatgagttgtggccggcagacaagctgggattcaccaagac 421 |||||| |||||||| || ||||| | ||||| ||||| |||||||| ||||||||||| Sbjct: 3689281 cacaagtagcttctttggagatgaactatggcctgcagataagctggggttcaccaagac 3689340 Query: 422 agccatccaagcaaagccagactctgtatactttgtagtaagcagg 467 ||||||||| ||||||||||||||||| |||||||| || |||||| Sbjct: 3689341 agccatccaggcaaagccagactctgtctactttgtggttagcagg 3689386 Score = 149 bits (75), Expect = 1e-32 Identities = 87/91 (95%) Strand = Plus / Plus Query: 210 gccggcgcggccaagaacatcgaggtggaggtagacaagccgctcggcctcacccttggc 269 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct: 3688431 gccggcgcggcgaagaacatcgaggtggaggtcgacaagccgctcggcctcaccctcggc 3688490 Query: 270 cagaagtccggcggcggcgtcgtcatcaccg 300 |||||| |||||||||||||||||||||||| Sbjct: 3688491 cagaagaccggcggcggcgtcgtcatcaccg 3688521
>dbj|AP005847.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ9990_A01 Length = 101684 Score = 155 bits (78), Expect = 2e-34 Identities = 144/166 (86%) Strand = Plus / Plus Query: 302 tgtggagtccggagggaatgcagcaagagcagggctcaagtcgggtgaccaagtgctcta 361 |||||| || |||||||| || ||||||||||| || || || |||||||| |||||||| Sbjct: 12718 tgtggattctggagggaacgcggcaagagcaggcctgaaatcaggtgaccaggtgctcta 12777 Query: 362 cacaagcagcttcttcggtgatgagttgtggccggcagacaagctgggattcaccaagac 421 |||||| |||||||| || ||||| | ||||| ||||| |||||||| ||||||||||| Sbjct: 12778 cacaagtagcttctttggagatgaactatggcctgcagataagctggggttcaccaagac 12837 Query: 422 agccatccaagcaaagccagactctgtatactttgtagtaagcagg 467 ||||||||| ||||||||||||||||| |||||||| || |||||| Sbjct: 12838 agccatccaggcaaagccagactctgtctactttgtggttagcagg 12883 Score = 149 bits (75), Expect = 1e-32 Identities = 87/91 (95%) Strand = Plus / Plus Query: 210 gccggcgcggccaagaacatcgaggtggaggtagacaagccgctcggcctcacccttggc 269 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct: 11928 gccggcgcggcgaagaacatcgaggtggaggtcgacaagccgctcggcctcaccctcggc 11987 Query: 270 cagaagtccggcggcggcgtcgtcatcaccg 300 |||||| |||||||||||||||||||||||| Sbjct: 11988 cagaagaccggcggcggcgtcgtcatcaccg 12018
>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0577B11 Length = 180355 Score = 155 bits (78), Expect = 2e-34 Identities = 144/166 (86%) Strand = Plus / Plus Query: 302 tgtggagtccggagggaatgcagcaagagcagggctcaagtcgggtgaccaagtgctcta 361 |||||| || |||||||| || ||||||||||| || || || |||||||| |||||||| Sbjct: 167727 tgtggattctggagggaacgcggcaagagcaggcctgaaatcaggtgaccaggtgctcta 167786 Query: 362 cacaagcagcttcttcggtgatgagttgtggccggcagacaagctgggattcaccaagac 421 |||||| |||||||| || ||||| | ||||| ||||| |||||||| ||||||||||| Sbjct: 167787 cacaagtagcttctttggagatgaactatggcctgcagataagctggggttcaccaagac 167846 Query: 422 agccatccaagcaaagccagactctgtatactttgtagtaagcagg 467 ||||||||| ||||||||||||||||| |||||||| || |||||| Sbjct: 167847 agccatccaggcaaagccagactctgtctactttgtggttagcagg 167892 Score = 149 bits (75), Expect = 1e-32 Identities = 87/91 (95%) Strand = Plus / Plus Query: 210 gccggcgcggccaagaacatcgaggtggaggtagacaagccgctcggcctcacccttggc 269 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct: 166937 gccggcgcggcgaagaacatcgaggtggaggtcgacaagccgctcggcctcaccctcggc 166996 Query: 270 cagaagtccggcggcggcgtcgtcatcaccg 300 |||||| |||||||||||||||||||||||| Sbjct: 166997 cagaagaccggcggcggcgtcgtcatcaccg 167027
>emb|CT571264.2| Medicago truncatula chromosome 5 clone mth2-146m15, COMPLETE SEQUENCE Length = 141614 Score = 103 bits (52), Expect = 5e-19 Identities = 130/156 (83%) Strand = Plus / Plus Query: 312 ggagggaatgcagcaagagcagggctcaagtcgggtgaccaagtgctctacacaagcagc 371 |||||||||||||||||||||||| | ||||| || |||||||| || || || ||||| Sbjct: 77996 ggagggaatgcagcaagagcagggttaaagtccggggaccaagttctatatactagcagt 78055 Query: 372 ttcttcggtgatgagttgtggccggcagacaagctgggattcaccaagacagccatccaa 431 ||||| || ||||| || ||||| ||||| ||||| |||||||| || ||||| ||| | Sbjct: 78056 ttctttggagatgaattatggccagcagataagcttggattcacgaaaacagcaatcaat 78115 Query: 432 gcaaagccagactctgtatactttgtagtaagcagg 467 || ||||| |||||||| |||||||| || |||||| Sbjct: 78116 gctaagcccgactctgtctactttgttgtcagcagg 78151
>dbj|AP006703.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01O03, TM0588b, complete sequence Length = 45450 Score = 83.8 bits (42), Expect = 5e-13 Identities = 123/150 (82%) Strand = Plus / Minus Query: 318 aatgcagcaagagcagggctcaagtcgggtgaccaagtgctctacacaagcagcttcttc 377 |||||||||| ||||||| | ||| | || |||||||| || || || ||||| ||||| Sbjct: 30036 aatgcagcaaaagcagggttaaaggcaggggaccaagtcctttatactagcagtttcttt 29977 Query: 378 ggtgatgagttgtggccggcagacaagctgggattcaccaagacagccatccaagcaaag 437 || ||||| |||||||| || || ||||| || ||||| || || || |||||||| ||| Sbjct: 29976 ggggatgaattgtggcctgcggataagcttggcttcactaaaaccgcaatccaagctaag 29917 Query: 438 ccagactctgtatactttgtagtaagcagg 467 ||||||||||| |||||||| || |||||| Sbjct: 29916 ccagactctgtctactttgttgtcagcagg 29887
>ref|NM_121723.3| Arabidopsis thaliana electron transporter/ metal ion binding / protein binding AT5G17170 mRNA, complete cds Length = 1131 Score = 65.9 bits (33), Expect = 1e-07 Identities = 144/181 (79%) Strand = Plus / Plus Query: 291 gtcatcaccggtgtggagtccggagggaatgcagcaagagcagggctcaagtcgggtgac 350 ||||||||||||||||| |||||||| ||||||| ||||||||| || || || || Sbjct: 451 gtcatcaccggtgtggacggaggagggaacgcagcaaaagcagggcttaaatctggagat 510 Query: 351 caagtgctctacacaagcagcttcttcggtgatgagttgtggccggcagacaagctggga 410 ||||| | ||||||||||| ||||| || |||||| | ||||| ||||| ||||| || Sbjct: 511 caagttgtgtacacaagcagtttctttggagatgagctttggcctgcagataagcttggc 570 Query: 411 ttcaccaagacagccatccaagcaaagccagactctgtatactttgtagtaagcaggggt 470 || || || || || || || ||||| || || ||||| |||||||| || ||||| ||| Sbjct: 571 tttactaaaactgcaattcaggcaaaacctgattctgtctactttgttgttagcagaggt 630 Query: 471 g 471 | Sbjct: 631 g 631
>gb|BT000984.1| Arabidopsis thaliana clone U09484 unknown protein (At5g17170) mRNA, complete cds Length = 847 Score = 65.9 bits (33), Expect = 1e-07 Identities = 144/181 (79%) Strand = Plus / Plus Query: 291 gtcatcaccggtgtggagtccggagggaatgcagcaagagcagggctcaagtcgggtgac 350 ||||||||||||||||| |||||||| ||||||| ||||||||| || || || || Sbjct: 319 gtcatcaccggtgtggacggaggagggaacgcagcaaaagcagggcttaaatctggagat 378 Query: 351 caagtgctctacacaagcagcttcttcggtgatgagttgtggccggcagacaagctggga 410 ||||| | ||||||||||| ||||| || |||||| | ||||| ||||| ||||| || Sbjct: 379 caagttgtgtacacaagcagtttctttggagatgagctttggcctgcagataagcttggc 438 Query: 411 ttcaccaagacagccatccaagcaaagccagactctgtatactttgtagtaagcaggggt 470 || || || || || || || ||||| || || ||||| |||||||| || ||||| ||| Sbjct: 439 tttactaaaactgcaattcaggcaaaacctgattctgtctactttgttgttagcagaggt 498 Query: 471 g 471 | Sbjct: 499 g 499
>gb|AY035119.1| Arabidopsis thaliana unknown protein (At5g17170) mRNA, complete cds Length = 1100 Score = 65.9 bits (33), Expect = 1e-07 Identities = 144/181 (79%) Strand = Plus / Plus Query: 291 gtcatcaccggtgtggagtccggagggaatgcagcaagagcagggctcaagtcgggtgac 350 ||||||||||||||||| |||||||| ||||||| ||||||||| || || || || Sbjct: 404 gtcatcaccggtgtggacggaggagggaacgcagcaaaagcagggcttaaatctggagat 463 Query: 351 caagtgctctacacaagcagcttcttcggtgatgagttgtggccggcagacaagctggga 410 ||||| | ||||||||||| ||||| || |||||| | ||||| ||||| ||||| || Sbjct: 464 caagttgtgtacacaagcagtttctttggagatgagctttggcctgcagataagcttggc 523 Query: 411 ttcaccaagacagccatccaagcaaagccagactctgtatactttgtagtaagcaggggt 470 || || || || || || || ||||| || || ||||| |||||||| || ||||| ||| Sbjct: 524 tttactaaaactgcaattcaggcaaaacctgattctgtctactttgttgttagcagaggt 583 Query: 471 g 471 | Sbjct: 584 g 584
>emb|BX831408.1|CNS0A09X Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS88ZA11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 817 Score = 65.9 bits (33), Expect = 1e-07 Identities = 144/181 (79%) Strand = Plus / Plus Query: 291 gtcatcaccggtgtggagtccggagggaatgcagcaagagcagggctcaagtcgggtgac 350 ||||||||||||||||| |||||||| ||||||| ||||||||| || || || || Sbjct: 201 gtcatcaccggtgtggacggaggagggaacgcagcaaaagcagggcttaaatctggagat 260 Query: 351 caagtgctctacacaagcagcttcttcggtgatgagttgtggccggcagacaagctggga 410 ||||| | ||||||||||| ||||| || |||||| | ||||| ||||| ||||| || Sbjct: 261 caagttgtgtacacaagcagtttctttggagatgagctttggcctgcagataagcttggc 320 Query: 411 ttcaccaagacagccatccaagcaaagccagactctgtatactttgtagtaagcaggggt 470 || || || || || || || ||||| || || ||||| |||||||| || ||||| ||| Sbjct: 321 tttactaaaactgcaattcaggcaaaacctgattctgtctactttgttgttagcagaggt 380 Query: 471 g 471 | Sbjct: 381 g 381
>emb|BX830489.1|CNS0A065 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB85ZC12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 976 Score = 65.9 bits (33), Expect = 1e-07 Identities = 144/181 (79%) Strand = Plus / Plus Query: 291 gtcatcaccggtgtggagtccggagggaatgcagcaagagcagggctcaagtcgggtgac 350 ||||||||||||||||| |||||||| ||||||| ||||||||| || || || || Sbjct: 372 gtcatcaccggtgtggacggaggagggaacgcagcaaaagcagggcttaaatctggagat 431 Query: 351 caagtgctctacacaagcagcttcttcggtgatgagttgtggccggcagacaagctggga 410 ||||| | ||||||||||| ||||| || |||||| | ||||| ||||| ||||| || Sbjct: 432 caagttgtgtacacaagcagtttctttggagatgagctttggcctgcagataagcttggc 491 Query: 411 ttcaccaagacagccatccaagcaaagccagactctgtatactttgtagtaagcaggggt 470 || || || || || || || ||||| || || ||||| |||||||| || ||||| ||| Sbjct: 492 tttactaaaactgcaattcaggcaaaacctgattctgtctactttgttgttagcagaggt 551 Query: 471 g 471 | Sbjct: 552 g 552
>emb|BX829838.1|CNS09ZY3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB40ZA04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 996 Score = 65.9 bits (33), Expect = 1e-07 Identities = 144/181 (79%) Strand = Plus / Plus Query: 291 gtcatcaccggtgtggagtccggagggaatgcagcaagagcagggctcaagtcgggtgac 350 ||||||||||||||||| |||||||| ||||||| ||||||||| || || || || Sbjct: 451 gtcatcaccggtgtggacggaggagggaacgcagcaaaagcagggcttaaatctggagat 510 Query: 351 caagtgctctacacaagcagcttcttcggtgatgagttgtggccggcagacaagctggga 410 ||||| | ||||||||||| ||||| || |||||| | ||||| ||||| ||||| || Sbjct: 511 caagttgtgtacacaagcagtttctttggagatgagctttggcctgcagataagcttggc 570 Query: 411 ttcaccaagacagccatccaagcaaagccagactctgtatactttgtagtaagcaggggt 470 || || || || || || || ||||| || || ||||| |||||||| || ||||| ||| Sbjct: 571 tttactaaaactgcaattcaggcaaaacctgattctgtctactttgttgttagcagaggt 630 Query: 471 g 471 | Sbjct: 631 g 631
>dbj|AB005238.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKP11 Length = 75188 Score = 56.0 bits (28), Expect = 1e-04 Identities = 124/156 (79%) Strand = Plus / Plus Query: 312 ggagggaatgcagcaagagcagggctcaagtcgggtgaccaagtgctctacacaagcagc 371 |||||||| ||||||| ||||||||| || || || || ||||| | ||||||||||| Sbjct: 8891 ggagggaacgcagcaaaagcagggcttaaatctggagatcaagttgtgtacacaagcagt 8950 Query: 372 ttcttcggtgatgagttgtggccggcagacaagctgggattcaccaagacagccatccaa 431 ||||| || |||||| | ||||| ||||| ||||| || || || || || || || || Sbjct: 8951 ttctttggagatgagctttggcctgcagataagcttggctttactaaaactgcaattcag 9010 Query: 432 gcaaagccagactctgtatactttgtagtaagcagg 467 ||||| || || ||||| |||||||| || |||||| Sbjct: 9011 gcaaaacctgattctgtctactttgttgttagcagg 9046
>gb|AC151928.2| Phaeodactylum tricornutum clone JGIAHOK-9H10, complete sequence Length = 35591 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 275 gtccggcggcggcgtcgtcatc 296 |||||||||||||||||||||| Sbjct: 4402 gtccggcggcggcgtcgtcatc 4423
>ref|NM_104894.2| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding AT1G62130 mRNA, complete cds Length = 3078 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 372 ttcttcggtgatgagttgtggccgg 396 |||||||||||||||||||| |||| Sbjct: 1330 ttcttcggtgatgagttgtgtccgg 1354
>gb|AC183679.3| Pan troglodytes BAC clone CH251-400O3 from chromosome 10, complete sequence Length = 203130 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 atcagccaagaagactgcctt 127 ||||||||||||||||||||| Sbjct: 18558 atcagccaagaagactgcctt 18538
>emb|AL589882.10| Human DNA sequence from clone RP11-368F13 on chromosome 10, complete sequence Length = 69266 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 atcagccaagaagactgcctt 127 ||||||||||||||||||||| Sbjct: 54133 atcagccaagaagactgcctt 54113
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 281 cggcggcgtcgtcatcaccgg 301 ||||||||||||||||||||| Sbjct: 2308027 cggcggcgtcgtcatcaccgg 2308007 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 gttgtggccggcagacaagc 405 |||||||||||||||||||| Sbjct: 722541 gttgtggccggcagacaagc 722560
>gb|AC151580.2| Mus musculus BAC clone RP23-65L6 from 18, complete sequence Length = 236806 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 cttccttccatcctctcaaca 104 ||||||||||||||||||||| Sbjct: 169957 cttccttccatcctctcaaca 169977
>gb|AC000375.1|F19K23 Sequence of BAC F19K23 from Arabidopsis thaliana chromosome 1, complete sequence Length = 97451 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 372 ttcttcggtgatgagttgtggccgg 396 |||||||||||||||||||| |||| Sbjct: 27874 ttcttcggtgatgagttgtgtccgg 27850
>ref|NM_196522.1| Oryza sativa (japonica cultivar-group) contains similarity to zinc finger protein ID1 (OSJNBa0006I13.9), mRNA Length = 1230 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 278 cggcggcggcgtcgtcatcaccgg 301 ||||||||||| |||||||||||| Sbjct: 849 cggcggcggcggcgtcatcaccgg 872
>gb|AY392153.1| Schistosoma bovis nicotinic acetylcholine receptor non-alpha subunit precursor, mRNA, complete cds Length = 2423 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 cggcggcggcgtcgtcatca 297 |||||||||||||||||||| Sbjct: 1965 cggcggcggcgtcgtcatca 1984
>emb|AL358215.16| Human DNA sequence from clone RP11-470L19 on chromosome 1 Contains the 3' end of the PROK1 gene for Prokineticin 1, a putatative novel transcript, an unprocessed pseudogene, a novel transcript and the LOC395116 gene for the shaker subfamily potassium channel KCNA10, complete sequence Length = 101529 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 ccacttccttccatcctctcaaca 104 |||||| ||||||||||||||||| Sbjct: 93898 ccactttcttccatcctctcaaca 93921
>gb|AC009780.12| Homo sapiens 12 BAC RP11-1C11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 144454 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 ccacttccttccatcctctc 100 |||||||||||||||||||| Sbjct: 68018 ccacttccttccatcctctc 67999
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 7 catcaccatggcggcccgctctcctccg 34 |||||||||||| ||| ||||||||||| Sbjct: 2961520 catcaccatggctgccagctctcctccg 2961547
>ref|XM_685950.1| PREDICTED: Danio rerio similar to slit homolog 1 (LOC562570), mRNA Length = 2394 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ggtgtggagtccggagggaa 319 |||||||||||||||||||| Sbjct: 848 ggtgtggagtccggagggaa 829
>gb|AC132231.6| Mus musculus BAC clone RP24-484D4 from chromosome 1, complete sequence Length = 188905 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 ccacttccttccatcctctc 100 |||||||||||||||||||| Sbjct: 50043 ccacttccttccatcctctc 50062
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 cttggtggacagtaggtggt 159 |||||||||||||||||||| Sbjct: 406470 cttggtggacagtaggtggt 406451
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 cggcggcggcgtcgtcatcaccgg 301 ||||||||||| |||||||||||| Sbjct: 14226106 cggcggcggcggcgtcatcaccgg 14226083
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 cggcggcggcgtcgtcatcaccgg 301 ||||||||||| |||||||||||| Sbjct: 2835612 cggcggcggcgccgtcatcaccgg 2835589
>gb|AE004827.1| Pseudomonas aeruginosa PAO1, section 388 of 529 of the complete genome Length = 11609 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 gcggcgaaggctggtgcagg 195 |||||||||||||||||||| Sbjct: 10589 gcggcgaaggctggtgcagg 10608
>gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb0006I13 chromosome 10, complete sequence Length = 142737 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 cggcggcggcgtcgtcatcaccgg 301 ||||||||||| |||||||||||| Sbjct: 98179 cggcggcggcggcgtcatcaccgg 98156
>dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0085L11 Length = 148142 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 cggcggcggcgtcgtcatcaccgg 301 ||||||||||| |||||||||||| Sbjct: 79093 cggcggcggcgccgtcatcaccgg 79070
>ref|NM_211573.1| Eremothecium gossypii AGL156Wp (AGL156W), mRNA Length = 2733 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 cttggtggacagtaggtggt 159 |||||||||||||||||||| Sbjct: 2643 cttggtggacagtaggtggt 2624
>gb|AC134622.3| Mus musculus BAC clone RP23-13I7 from 6, complete sequence Length = 203072 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 tatactttgtagtaagcagg 467 |||||||||||||||||||| Sbjct: 154809 tatactttgtagtaagcagg 154790
>gb|AC121108.12| Mus musculus chromosome 3, clone RP24-417H10, complete sequence Length = 184753 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 tccatcactgctccgtcgtcaggg 69 ||||||||||||| |||||||||| Sbjct: 87517 tccatcactgctcagtcgtcaggg 87540
>emb|BX537305.32| Zebrafish DNA sequence from clone DKEY-45L12, complete sequence Length = 186856 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ggtgtggagtccggagggaa 319 |||||||||||||||||||| Sbjct: 19325 ggtgtggagtccggagggaa 19306
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 cggcggcggcgtcgtcatcaccgg 301 ||||||||||| |||||||||||| Sbjct: 14234348 cggcggcggcggcgtcatcaccgg 14234325 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,494,922 Number of Sequences: 3902068 Number of extensions: 4494922 Number of successful extensions: 84347 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83931 Number of HSP's gapped (non-prelim): 409 length of query: 480 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 458 effective length of database: 17,147,199,772 effective search space: 7853417495576 effective search space used: 7853417495576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)