ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63g01 |
|---|---|
| Clone Library Name | barley_pub |
>YAI5_SCHPO (Q09893) Hypothetical protein C24B11.05 in chromosome I| Length = 226 Score = 75.9 bits (185), Expect = 8e-14 Identities = 46/120 (38%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Frame = +2 Query: 239 YPLSSGISSHVKTNIEAYMVEKLGIEESKIENLGNLLYKNYGTTMAGLRAIGYNFDYDEY 418 YP S I + + I A+ +KLGI + E L + Y++YG + GL + + D +Y Sbjct: 17 YPKSYKIHNMMAARITAFFSDKLGIPTEEAERLREVYYRHYGIAIRGL-VLHHEIDAVDY 75 Query: 419 HSFVHGRLPYDN-IKPDPVLKHILKNMR--IRKLIFTNGDMIHAVRALKRLGLEDCFEGI 589 V LP + IK D VL+ +L +R + IFTN ++HA R LK LG+EDCF+GI Sbjct: 76 DQRVDQSLPLEKVIKKDEVLREMLLELRKKYKCWIFTNAYIVHANRVLKYLGIEDCFDGI 135
>YEM7_YEAST (P40025) Hypothetical 37.7 kDa protein in PIP1-GLN3 intergenic| region Length = 321 Score = 63.5 bits (153), Expect = 4e-10 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 8/150 (5%) Frame = +2 Query: 164 EFDERCLKVQDPKXXXXXXXXXXXXYPLSSGISSHVKTNIEAYMVEKLGIEESKIENLGN 343 E D L DP Y S+ + ++ ++ + +LG ++ + E L Sbjct: 39 EVDPPKLPDPDPARKVFFFDIDNTLYRKSTKVQLLMQQSLSNFFKYELGFDDDEAERLIE 98 Query: 344 LLYKNYGTTMAGLRAIGYNFDYDEYHSFVHGRLPY-DNIKPDPVLKHILKNMRIRKL--- 511 Y+ YG ++ GL D +Y++F+ LP D +KPD L+ +L N++ +KL Sbjct: 99 SYYQEYGLSVKGLIKNKQIDDVLQYNTFIDDSLPLQDYLKPDWKLRELLINLKKKKLGKF 158 Query: 512 ----IFTNGDMIHAVRALKRLGLEDCFEGI 589 +FTN HA+R +K LG+ D F+GI Sbjct: 159 DKLWLFTNSYKNHAIRCVKILGIADLFDGI 188
>SSM1_YEAST (P53078) Protein SSM1| Length = 280 Score = 53.5 bits (127), Expect = 4e-07 Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 6/123 (4%) Frame = +2 Query: 239 YPLSSGISSHVKTNIEAYMVEKLGIEESKIENLGNLLYKNYGTTMAGLRAIGYNFDYDEY 418 Y S+ I ++ +I + L + L N YK YG + GL + + + EY Sbjct: 67 YKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGL-VMFHKVNALEY 125 Query: 419 HSFVHGRLPYDNI-KPDPVLKHILKNMR----IRKL-IFTNGDMIHAVRALKRLGLEDCF 580 + V LP +I KPD L+++L +R I KL +FTN HA+R L+ LG+ D F Sbjct: 126 NRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGIADLF 185 Query: 581 EGI 589 +G+ Sbjct: 186 DGL 188
>5E5_RAT (Q63003) 5E5 antigen| Length = 825 Score = 33.5 bits (75), Expect = 0.48 Identities = 19/39 (48%), Positives = 19/39 (48%), Gaps = 3/39 (7%) Frame = -3 Query: 269 RVMRSRSSAGTECRRGRRAGSRTWGPGP*G---SARRTP 162 RV R GTE RG AG R WGP P G RR P Sbjct: 401 RVESPREWGGTESPRGWEAGPREWGPSPGGRGDGPRRRP 439
>YOD3_CAEEL (P34595) Hypothetical protein ZC262.3 in chromosome III| Length = 773 Score = 32.7 bits (73), Expect = 0.82 Identities = 22/61 (36%), Positives = 32/61 (52%) Frame = +2 Query: 392 GYNFDYDEYHSFVHGRLPYDNIKPDPVLKHILKNMRIRKLIFTNGDMIHAVRALKRLGLE 571 G N E H++ H +L +D P P L+HI+ +R L NG +IH LK L +E Sbjct: 73 GSNIQRLELHNWQHDQLNFDIFAPFPQLEHII--LRDGDLESLNGTVIHP--TLKVLSIE 128 Query: 572 D 574 + Sbjct: 129 N 129
>ATP8_MYXGL (O63913) ATP synthase protein 8 (EC 3.6.3.14) (ATPase subunit 8)| (A6L) Length = 54 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = -2 Query: 564 PSLLRALTAWIMSPLVKMSLRMRMFLRICLRTXXXXXXXXXXLPWTKLW 418 P LL AL+ W+ PL+ +SL FL + L+T PW W Sbjct: 8 PWLLMALSLWVCFPLMMLSL--SSFLPLTLKTSLPSTLKSSPNPWILPW 54
>KR109_HUMAN (P60411) Keratin-associated protein 10-9 (Keratin-associated| protein 10.9) (High sulfur keratin-associated protein 10.9) (Keratin-associated protein 18-9) (Keratin-associated protein 18.9) Length = 292 Score = 31.2 bits (69), Expect = 2.4 Identities = 14/31 (45%), Positives = 15/31 (48%) Frame = -3 Query: 371 SWCHSSYTAGCQGFRSCSPQYPASQPCRLQC 279 S C SS T C SC P Y S PC+ C Sbjct: 69 SGCTSSCTPSCCQQSSCQPAYCTSSPCQQAC 99
>LEPA_FRATT (Q5NEF8) GTP-binding protein lepA| Length = 594 Score = 30.8 bits (68), Expect = 3.1 Identities = 25/96 (26%), Positives = 42/96 (43%) Frame = +2 Query: 287 AYMVEKLGIEESKIENLGNLLYKNYGTTMAGLRAIGYNFDYDEYHSFVHGRLPYDNIKPD 466 AY V++LG+ K+++L +L G +AG++ I + H P D KP Sbjct: 231 AYQVDRLGVFTPKMKDLDHLKAGEVGFIVAGIKDI---HGAPVGDTLTHAHNPTD--KPV 285 Query: 467 PVLKHILKNMRIRKLIFTNGDMIHAVRALKRLGLED 574 P K + + ++ D AL++L L D Sbjct: 286 PGFKKVQPQVYAGMFTISSDDYPDFREALEKLSLND 321
>ACHG_MOUSE (P04760) Acetylcholine receptor protein, gamma subunit precursor| Length = 519 Score = 27.7 bits (60), Expect(2) = 3.2 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = -2 Query: 183 RQRSSNSMIRTVVERTTDGPPLRQ 112 RQR N +++ V+E+ +GP +RQ Sbjct: 402 RQRQRNGLVQAVLEKLENGPEVRQ 425 Score = 21.6 bits (44), Expect(2) = 3.2 Identities = 8/21 (38%), Positives = 12/21 (57%) Frame = -1 Query: 79 CVEPCLLQERARKRMREREGG 17 CV+ C L RAR++ + G Sbjct: 443 CVDACNLMARARRQQSHFDSG 463
>INCE_HUMAN (Q9NQS7) Inner centromere protein| Length = 923 Score = 30.4 bits (67), Expect = 4.1 Identities = 21/55 (38%), Positives = 26/55 (47%) Frame = -2 Query: 228 SRSKSRQSNLGSWTLRQRSSNSMIRTVVERTTDGPPLRQCNRARGCEGRGVWSLA 64 SR KSR S L S LR + S + TVV +G LR+ RA +LA Sbjct: 87 SRRKSRSSQLSSRRLRSKDSVEKLATVVGE--NGSVLRRVTRAAAAAAAATMALA 139
>HFW1_DROME (Q9W568) Protein halfway precursor (Protein singed wings)| Length = 611 Score = 30.4 bits (67), Expect = 4.1 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 4/74 (5%) Frame = +1 Query: 385 GNWLQLRLRRVPQLCPW-KAALRQHQARPRSQAYSQEHAHPQA--HFHQR*HDPCRESPQ 555 G WL L L V C + A A ++ HAHPQA H H H P +E Q Sbjct: 7 GTWLLLLLLLVAGACARPEIAHTPDPAALGEESTPHAHAHPQARHHHHAHPHAPLKEDEQ 66 Query: 556 -EAGPGGLLRGDHL 594 A P +L D++ Sbjct: 67 GTAIPAPILTTDNV 80
>IE18_PRVKA (P33479) Immediate-early protein IE180| Length = 1446 Score = 30.4 bits (67), Expect = 4.1 Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 7/67 (10%) Frame = +1 Query: 49 RALEASKAPHTSAFASASSVALPQRRTVSSSFHHSP----DHGVRRALP---QGPGPQVR 207 R+ A +AP +A SASS + + SSS S D GVR P GP P Sbjct: 362 RSPSAPRAPAAAARRSASSSSSSSSSSSSSSSSSSSEGEEDEGVRPGAPLARAGPPPSPP 421 Query: 208 LPALRPR 228 PA PR Sbjct: 422 APAAAPR 428
>AFLR_ASPFL (P41765) Aflatoxin biosynthesis regulatory protein| Length = 437 Score = 30.4 bits (67), Expect = 4.1 Identities = 13/28 (46%), Positives = 13/28 (46%) Frame = +1 Query: 448 RQHQARPRSQAYSQEHAHPQAHFHQR*H 531 R Q P YS HAH QAH H H Sbjct: 88 RSEQGLPAHNTYSTPHAHTQAHTHAHSH 115
>CUT_DROME (P10180) Homeobox protein cut| Length = 2175 Score = 29.6 bits (65), Expect = 6.9 Identities = 14/50 (28%), Positives = 19/50 (38%) Frame = +1 Query: 442 ALRQHQARPRSQAYSQEHAHPQAHFHQR*HDPCRESPQEAGPGGLLRGDH 591 A Q Q + Q Q+ H Q H HQ+ H ++ P DH Sbjct: 664 AHHQQQQHHQQQHQHQQQHHQQQHLHQQHHHHLQQQPNSGSNSNPASNDH 713
>ACEK_BURPS (Q63Y16) Isocitrate dehydrogenase kinase/phosphatase (EC 2.7.11.5)| (EC 3.1.3.-) (IDH kinase/phosphatase) (IDHK/P) Length = 603 Score = 29.6 bits (65), Expect = 6.9 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +2 Query: 338 GNLLYKNYGTTMAGLRAIGYNFDYDEY 418 G++LYKN+G T G R + Y++D EY Sbjct: 468 GDMLYKNFGVTRHG-RVVFYDYDEIEY 493
>ACEK_BURMA (Q62MX7) Isocitrate dehydrogenase kinase/phosphatase (EC 2.7.11.5)| (EC 3.1.3.-) (IDH kinase/phosphatase) (IDHK/P) Length = 603 Score = 29.6 bits (65), Expect = 6.9 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +2 Query: 338 GNLLYKNYGTTMAGLRAIGYNFDYDEY 418 G++LYKN+G T G R + Y++D EY Sbjct: 468 GDMLYKNFGVTRHG-RVVFYDYDEIEY 493
>HEM3_YERPE (P46355) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 313 Score = 29.6 bits (65), Expect = 6.9 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 3/42 (7%) Frame = +2 Query: 458 KPDPVLKHILKNMRIRKLIFTNGD---MIHAVRALKRLGLED 574 +PD +++ + N+ R NGD +I AV LKRLGLE+ Sbjct: 140 RPDLIIRDLRGNVGTRLAKLDNGDYQAIILAVAGLKRLGLEN 181
>ACEK_RALEU (Q8KLU8) Isocitrate dehydrogenase kinase/phosphatase (EC 2.7.11.5)| (EC 3.1.3.-) (IDH kinase/phosphatase) (IDHK/P) Length = 613 Score = 29.6 bits (65), Expect = 6.9 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +2 Query: 338 GNLLYKNYGTTMAGLRAIGYNFDYDEY 418 G++LYKN+G T G R + Y++D EY Sbjct: 474 GDMLYKNFGVTRHG-RVVFYDYDEIEY 499
>ACEK_RALSO (Q8Y2Q7) Isocitrate dehydrogenase kinase/phosphatase (EC 2.7.11.5)| (EC 3.1.3.-) (IDH kinase/phosphatase) (IDHK/P) Length = 608 Score = 29.6 bits (65), Expect = 6.9 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +2 Query: 338 GNLLYKNYGTTMAGLRAIGYNFDYDEY 418 G++LYKN+G T G R + Y++D EY Sbjct: 474 GDMLYKNFGVTRHG-RVVFYDYDEIEY 499
>UREE_RALEJ (Q473Q8) Urease accessory protein ureE| Length = 221 Score = 29.3 bits (64), Expect = 9.1 Identities = 12/50 (24%), Positives = 19/50 (38%) Frame = +1 Query: 436 KAALRQHQARPRSQAYSQEHAHPQAHFHQR*HDPCRESPQEAGPGGLLRG 585 +A +H +S H+H +H H HD + E G + G Sbjct: 165 QAVFHEHHGHDHDHGHSHSHSHSHSHSHSHSHDHDHDHDHEHDVKGHVHG 214
>KPRS_NEIMB (P65235) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)| (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) Length = 327 Score = 29.3 bits (64), Expect = 9.1 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Frame = +2 Query: 335 LGNLLYKNYGTTMAGL-RAIGYNFDYDEYHSFVHGRLPYDNIKPDPVLKHILKNMRIRKL 511 + N+LY AG+ R + + D+ F +P DNI P+L + +K RI L Sbjct: 116 VANMLYS------AGIDRVLTVDLHADQIQGFFD--IPVDNIYATPILLNDIKQQRIENL 167 Query: 512 IFTNGDMIHAVRA 550 + D+ VRA Sbjct: 168 TVVSPDIGGVVRA 180
>KPRS_NEIMA (P65234) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)| (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) Length = 327 Score = 29.3 bits (64), Expect = 9.1 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Frame = +2 Query: 335 LGNLLYKNYGTTMAGL-RAIGYNFDYDEYHSFVHGRLPYDNIKPDPVLKHILKNMRIRKL 511 + N+LY AG+ R + + D+ F +P DNI P+L + +K RI L Sbjct: 116 VANMLYS------AGIDRVLTVDLHADQIQGFFD--IPVDNIYATPILLNDIKQQRIENL 167 Query: 512 IFTNGDMIHAVRA 550 + D+ VRA Sbjct: 168 TVVSPDIGGVVRA 180
>ABDA_TRICA (Q07961) Homeobox protein abdominal-A homolog| Length = 343 Score = 29.3 bits (64), Expect = 9.1 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%) Frame = +1 Query: 355 ELWHHDGRPQGNWLQLRLRRVPQLCPWKAALRQHQARPRSQAYS-QEHAHPQAH--FHQR 525 ++W + R + L+ LR V ++ R+ Q R + Q Q+ Q H HQ Sbjct: 261 KIWFQNRRMK---LKKELRAVKEINEQARREREEQERHKQQQQEKQQKIEQQTHSSIHQH 317 Query: 526 *HDPCRESPQEAGPGGLLR 582 HDP + S ++G LL+ Sbjct: 318 HHDPMKMSLDKSGGSDLLK 336
>PACC_DEBHA (Q6BSZ4) pH-response transcription factor pacC/RIM101| Length = 617 Score = 29.3 bits (64), Expect = 9.1 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Frame = +1 Query: 436 KAALRQHQARPRSQAYSQEHAHPQAHFHQ-R*HDPCRESPQ 555 KA RQ + + Y EH H Q + Q H+P PQ Sbjct: 261 KAHRRQQEEHDHEREYEHEHEHEQEQYRQLHFHNPSHSQPQ 301
>CLC4E_RAT (Q67EQ1) C-type lectin domain family 4 member E (C-type lectin| superfamily member 9) (Macrophage-inducible C-type lectin) Length = 215 Score = 29.3 bits (64), Expect = 9.1 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +3 Query: 249 APGSHHTSRPTLKPTWLRSWVLRRARSKTLATCCI 353 +P SHHT R K + + SW + A L+ C I Sbjct: 6 SPASHHTERECFKNSQVLSWTMAGASILFLSVCFI 40
>HEM3_YERPS (Q66G00) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 313 Score = 29.3 bits (64), Expect = 9.1 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = +2 Query: 458 KPDPVLKHILKNMRIRKLIFTNGD---MIHAVRALKRLGLE 571 +PD +++ + N+ R NGD +I AV LKRLGLE Sbjct: 140 RPDLIIRDLRGNVGTRLAKLDNGDYQAIILAVAGLKRLGLE 180 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,546,839 Number of Sequences: 219361 Number of extensions: 1611139 Number of successful extensions: 6147 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 5695 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6097 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
