Clone Information

BLAST Search Result

Clone Name	bah63g01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY106832.1\| Zea mays PCO074808 mRNA sequence	543	e-151
2	dbj\|AK100173.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	515	e-143
3	dbj\|AK059223.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	515	e-143
4	dbj\|AK067356.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	486	e-134
5	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	137	5e-29
6	gb\|AC107315.1\| Genomic sequence for Oryza sativa, Nipponbare str...	137	5e-29
7	gb\|AC134238.2\| Oryza sativa (japonica cultivar-group) chromosome...	137	5e-29
8	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	137	5e-29
9	emb\|AJ237988.1\|VVI237988 Vitis vinifera mRNA for putative ripeni...	58	3e-05
10	ref\|NM_193122.1\| Oryza sativa (japonica cultivar-group), mRNA	56	1e-04
11	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	56	1e-04
12	dbj\|AP004334.2\| Oryza sativa (japonica cultivar-group) genomic D...	56	1e-04
13	ref\|XM_469419.1\| Oryza sativa (japonica cultivar-group), mRNA	52	0.002
14	dbj\|AK099563.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.002
15	dbj\|AK061982.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.002
16	dbj\|AK061528.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.002
17	gb\|AY108507.1\| Zea mays PCO092437 mRNA sequence	44	0.52
18	gb\|AC108919.7\| Mus musculus chromosome 6, clone RP23-52O21, comp...	42	2.1
19	emb\|AL157935.28\| Human DNA sequence from clone RP11-203J24 on ch...	42	2.1
20	emb\|AL033520.16\|HS349A12 Human DNA sequence from clone RP3-349A1...	42	2.1
21	dbj\|AK001094.1\| Homo sapiens cDNA FLJ10232 fis, clone HEMBB1000244	42	2.1
22	gb\|AC132812.9\| Homo sapiens chromosome 17, clone RP13-104F24, co...	42	2.1
23	dbj\|AP002992.4\| Homo sapiens genomic DNA, chromosome 11 clone:CT...	42	2.1
24	dbj\|AP002813.4\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	42	2.1
25	gb\|AC009994.10\| Homo sapiens chromosome 17, clone RP11-87N3, com...	42	2.1
26	gb\|AC150242.3\| Rhinolophus ferrumequinum clone VMRC7-331J24, com...	40	8.2
27	gb\|AC093017.10\| Oryza sativa (japonica cultivar-group) chromosom...	40	8.2
28	gb\|AY657496.1\| Synthetic construct Peudomonas aeruginosa clone F...	40	8.2
29	ref\|XM_959852.1\| Neurospora crassa OR74A hypothetical protein (N...	40	8.2
30	ref\|XM_324968.1\| Neurospora crassa OR74A hypothetical protein (N...	40	8.2
31	gb\|AC122405.4\| Mus musculus BAC clone RP24-119O6 from chromosome...	40	8.2
32	ref\|XM_785414.1\| PREDICTED: Strongylocentrotus purpuratus hypoth...	40	8.2
33	emb\|BX842680.1\| Neurospora crassa DNA linkage group I cosmid con...	40	8.2
34	emb\|BX572594.1\| Rhodopseudomonas palustris CGA009 complete genom...	40	8.2
35	gb\|AC155227.3\| Rhinolophus ferrumequinum clone VMRC7-4K1, comple...	40	8.2
36	gb\|AC115778.11\| Mus musculus chromosome 8, clone RP23-148F13, co...	40	8.2
37	emb\|BX323041.9\| Zebrafish DNA sequence from clone RP71-82P7 in l...	40	8.2
38	dbj\|AK029746.1\| Mus musculus adult male testis cDNA, RIKEN full-...	40	8.2
39	dbj\|AK045089.1\| Mus musculus 9.5 days embryo parthenogenote cDNA...	40	8.2
40	gb\|AF035381.1\|AF035381 Lytechinus variegatus ovoperoxidase (LvOp...	40	8.2
41	gb\|DP000028.1\| Rhinolophus ferrumequinum target 1 genomic scaffold	40	8.2
42	gb\|AE004544.1\| Pseudomonas aeruginosa PAO1, section 105 of 529 o...	40	8.2
43	gb\|AY104976.1\| Zea mays PCO136133 mRNA sequence	40	8.2
44	gb\|AC125380.4\| Mus musculus BAC clone RP23-204N23 from 1, comple...	40	8.2
45	emb\|CT030194.5\| Mouse DNA sequence from clone RP23-463F7 on chro...	40	8.2
46	gb\|AC172877.1\| Brassica rapa subsp. pekinensis clone KBrH042F19,...	40	8.2

>gb|AY106832.1| Zea mays PCO074808 mRNA sequence
          Length = 1378

 Score =  543 bits (274), Expect = e-151
 Identities = 400/442 (90%)
 Strand = Plus / Plus

                                                                       
Query: 160 catggagttcgacgagcgctgcctcaaggtccaggaccccaagttcgactgcctgctctt 219
           |||||||||||| || ||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 165 catggagttcgaagaccgctgccacaaggtccaggagcccaagttcgactgcctgctctt 224

                                                                       
Query: 220 cgacctcgacgacactctgtacccgctgagctccgggatctcatcacacgtcaagaccaa 279
           ||||||||||||||| ||||| ||||||||| |||||||| ||   || |||||||  ||
Sbjct: 225 cgacctcgacgacaccctgtatccgctgagcgccgggatcgcaggccatgtcaagaagaa 284

                                                                       
Query: 280 cattgaagcctacatggttgagaagctgggtattgaggagagcaagatcgaaaaccttgg 339
           ||||||||  |||||||||||||||||||||||||| |||| ||||||||| ||||| ||
Sbjct: 285 cattgaagattacatggttgagaagctgggtattgacgagaccaagatcgagaacctggg 344

                                                                       
Query: 340 caacctgctgtataagaactatggcaccacgatggccggcctcagggcaattggctacaa 399
           ||| |||||||| |||||||| |||||||||||||| || |||||||| || ||||||| 
Sbjct: 345 caatctgctgtacaagaactacggcaccacgatggctggactcagggccatcggctacag 404

                                                                       
Query: 400 cttcgattacgacgagtaccacagctttgtccatggaaggctgccctacgacaacatcaa 459
           |||||||||||| |||||||||  ||| |||||||||||| |||| ||||||||||||||
Sbjct: 405 cttcgattacgatgagtaccacgccttcgtccatggaaggttgccgtacgacaacatcaa 464

                                                                       
Query: 460 gcccgaccccgttctcaagcatattctcaagaacatgcgcatccgcaagctcattttcac 519
           ||| |||||| |||||||||| |||||||||||| ||||||||||||| ||||| |||||
Sbjct: 465 gcctgaccccattctcaagcacattctcaagaacctgcgcatccgcaaactcatattcac 524

                                                                       
Query: 520 caacggtgacatgatccatgccgtgagagccctcaagaggctgggcctggaggactgctt 579
           ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 caacggtgacatggtccacgccgtgagagccctcaagaggctgggcctggaggactgctt 584

                                 
Query: 580 cgaggggatcatctgcttcgag 601
           ||||||||||||||||||||||
Sbjct: 585 cgaggggatcatctgcttcgag 606

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>dbj|AK100173.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026N03, full
           insert sequence
          Length = 1378

 Score =  515 bits (260), Expect = e-143
 Identities = 398/444 (89%)
 Strand = Plus / Plus

                                                                       
Query: 158 atcatggagttcgacgagcgctgcctcaaggtccaggaccccaagttcgactgcctgctc 217
           |||||||||||||| || ||||||| |||||||||||| ||||| |||||||||||||| 
Sbjct: 156 atcatggagttcgaagaccgctgccacaaggtccaggagcccaaattcgactgcctgctg 215

                                                                       
Query: 218 ttcgacctcgacgacactctgtacccgctgagctccgggatctcatcacacgtcaagacc 277
           || |||||||| |||||||||||||| |||||||| |||||| | || || |||||||  
Sbjct: 216 tttgacctcgatgacactctgtacccactgagctcggggatcgcgtcccatgtcaagaag 275

                                                                       
Query: 278 aacattgaagcctacatggttgagaagctgggtattgaggagagcaagatcgaaaacctt 337
           ||||||| ||  |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 276 aacattggagattacatggttgagaagctgggtattgaggagagcaagattgagaacctt 335

                                                                       
Query: 338 ggcaacctgctgtataagaactatggcaccacgatggccggcctcagggcaattggctac 397
           ||||| |||||||| |||||||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct: 336 ggcaatctgctgtacaagaactacggcacgacgatggccggactcagggcaataggctac 395

                                                                       
Query: 398 aacttcgattacgacgagtaccacagctttgtccatggaaggctgccctacgacaacatc 457
           | |||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 396 agcttcgattacgatgagtaccacagttttgtccatggaagactgccctacgagaacatc 455

                                                                       
Query: 458 aagcccgaccccgttctcaagcatattctcaagaacatgcgcatccgcaagctcattttc 517
           ||||| ||||| || || ||||| |||||||||||| ||||||||||||| ||||| |||
Sbjct: 456 aagccggaccctgtcctgaagcacattctcaagaacctgcgcatccgcaaactcatattc 515

                                                                       
Query: 518 accaacggtgacatgatccatgccgtgagagccctcaagaggctgggcctggaggactgc 577
           |||||||| |||| |  ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 516 accaacggcgacaaggaccacgccgtgagagccctcaagaggctggggctggaggactgc 575

                                   
Query: 578 ttcgaggggatcatctgcttcgag 601
           ||||||||||||||||||||||||
Sbjct: 576 ttcgaggggatcatctgcttcgag 599

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>dbj|AK059223.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-D05, full
           insert sequence
          Length = 1314

 Score =  515 bits (260), Expect = e-143
 Identities = 398/444 (89%)
 Strand = Plus / Plus

                                                                       
Query: 158 atcatggagttcgacgagcgctgcctcaaggtccaggaccccaagttcgactgcctgctc 217
           |||||||||||||| || ||||||| |||||||||||| ||||| |||||||||||||| 
Sbjct: 155 atcatggagttcgaagaccgctgccacaaggtccaggagcccaaattcgactgcctgctg 214

                                                                       
Query: 218 ttcgacctcgacgacactctgtacccgctgagctccgggatctcatcacacgtcaagacc 277
           || |||||||| |||||||||||||| |||||||| |||||| | || || |||||||  
Sbjct: 215 tttgacctcgatgacactctgtacccactgagctcggggatcgcgtcccatgtcaagaag 274

                                                                       
Query: 278 aacattgaagcctacatggttgagaagctgggtattgaggagagcaagatcgaaaacctt 337
           ||||||| ||  |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 275 aacattggagattacatggttgagaagctgggtattgaggagagcaagattgagaacctt 334

                                                                       
Query: 338 ggcaacctgctgtataagaactatggcaccacgatggccggcctcagggcaattggctac 397
           ||||| |||||||| |||||||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct: 335 ggcaatctgctgtacaagaactacggcacgacgatggccggactcagggcaataggctac 394

                                                                       
Query: 398 aacttcgattacgacgagtaccacagctttgtccatggaaggctgccctacgacaacatc 457
           | |||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 395 agcttcgattacgatgagtaccacagttttgtccatggaagactgccctacgagaacatc 454

                                                                       
Query: 458 aagcccgaccccgttctcaagcatattctcaagaacatgcgcatccgcaagctcattttc 517
           ||||| ||||| || || ||||| |||||||||||| ||||||||||||| ||||| |||
Sbjct: 455 aagccggaccctgtcctgaagcacattctcaagaacctgcgcatccgcaaactcatattc 514

                                                                       
Query: 518 accaacggtgacatgatccatgccgtgagagccctcaagaggctgggcctggaggactgc 577
           |||||||| |||| |  ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 515 accaacggcgacaaggaccacgccgtgagagccctcaagaggctggggctggaggactgc 574

                                   
Query: 578 ttcgaggggatcatctgcttcgag 601
           ||||||||||||||||||||||||
Sbjct: 575 ttcgaggggatcatctgcttcgag 598

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>dbj|AK067356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013103J23, full
           insert sequence
          Length = 1315

 Score =  486 bits (245), Expect = e-134
 Identities = 396/445 (88%), Gaps = 1/445 (0%)
 Strand = Plus / Plus

                                                                       
Query: 158 atcatggagttcgacgagcgctgcctcaaggtccaggaccccaagttcgactgcctgctc 217
           |||||||||||||| || ||||||| |||||||||||| ||||| |||||||||||||| 
Sbjct: 157 atcatggagttcgaagaccgctgccacaaggtccaggagcccaaattcgactgcctgctg 216

                                                                       
Query: 218 ttcgacctcgacgacactctgtacccgctgagctccgggatctcatcacacgtcaagacc 277
           || |||||||| ||||||||||| || |||||||| |||||| | || || |||||||  
Sbjct: 217 tttgacctcgatgacactctgtatccactgagctcggggatcgcgtcccatgtcaagaag 276

                                                                       
Query: 278 aacattgaagcctacatggttgagaagctgggtattgaggagagcaagatcgaaaacctt 337
           ||||||| ||  |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 277 aacattggagattacatggttgagaagctgggtattgaggagagcaagattgagaacctt 336

                                                                       
Query: 338 ggcaacctgctgtataagaactatggcaccacgatggccggcctcagggcaattggctac 397
           ||||| |||||||| |||||||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct: 337 ggcaatctgctgtacaagaactacggcacgacgatggccggactcagggcaataggctac 396

                                                                       
Query: 398 aacttcgattacgacgagtaccacagctttgtccatggaaggct-gccctacgacaacat 456
           | |||||||||||| ||||||||||| |||||||||||||| || ||||||||| |||||
Sbjct: 397 agcttcgattacgatgagtaccacagttttgtccatggaagactagccctacgagaacat 456

                                                                       
Query: 457 caagcccgaccccgttctcaagcatattctcaagaacatgcgcatccgcaagctcatttt 516
           |||||| ||||| || || ||||| |||||||||||| ||||||||||||| ||||| ||
Sbjct: 457 caagccggaccctgtcctgaagcacattctcaagaacctgcgcatccgcaaactcatatt 516

                                                                       
Query: 517 caccaacggtgacatgatccatgccgtgagagccctcaagaggctgggcctggaggactg 576
           ||||||||| |||| |  ||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 517 caccaacggcgacaaggaccacgccgtgagagccctcaagaggctggggctggaagactg 576

                                    
Query: 577 cttcgaggggatcatctgcttcgag 601
           |||||||||||||||||||||||||
Sbjct: 577 cttcgaggggatcatctgcttcgag 601

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  137 bits (69), Expect = 5e-29
 Identities = 90/97 (92%)
 Strand = Plus / Plus

                                                                           
Query: 290     tacatggttgagaagctgggtattgaggagagcaagatcgaaaaccttggcaacctgctg 349
               |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 9175518 tacatggttgagaagctgggtattgaggagagcaagattgagaaccttggcaatctgctg 9175577

                                                    
Query: 350     tataagaactatggcaccacgatggccggcctcaggg 386
               || |||||||| ||||| ||||||||||| |||||||
Sbjct: 9175578 tacaagaactacggcacgacgatggccggactcaggg 9175614



 Score =  125 bits (63), Expect = 2e-25
 Identities = 81/87 (93%)
 Strand = Plus / Plus

                                                                           
Query: 515     ttcaccaacggtgacatgatccatgccgtgagagccctcaagaggctgggcctggaggac 574
               ||||||||||| |||| |  ||| |||||||||||||||||||||||||| |||||||||
Sbjct: 9176024 ttcaccaacggcgacaaggaccacgccgtgagagccctcaagaggctggggctggaggac 9176083

                                          
Query: 575     tgcttcgaggggatcatctgcttcgag 601
               |||||||||||||||||||||||||||
Sbjct: 9176084 tgcttcgaggggatcatctgcttcgag 9176110



 Score =  103 bits (52), Expect = 7e-19
 Identities = 79/88 (89%)
 Strand = Plus / Plus

                                                                           
Query: 420     acagctttgtccatggaaggctgccctacgacaacatcaagcccgaccccgttctcaagc 479
               |||| |||||||||||||| ||||||||||| ||||||||||| ||||| || || ||||
Sbjct: 9175842 acagttttgtccatggaagactgccctacgagaacatcaagccggaccctgtcctgaagc 9175901

                                           
Query: 480     atattctcaagaacatgcgcatccgcaa 507
               | |||||||||||| |||||||||||||
Sbjct: 9175902 acattctcaagaacctgcgcatccgcaa 9175929



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                          
Query: 158     atcatggagttcgacgagcgctgcctcaaggtccaggaccccaagttcgactgcctgct 216
               |||||||||||||| || ||||||| |||||||||||| ||||| ||||||||||||||
Sbjct: 9175167 atcatggagttcgaagaccgctgccacaaggtccaggagcccaaattcgactgcctgct 9175225



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                           
Query: 221     gacctcgacgacactctgtacccgctgagctccgggatctcatcacacgtcaagaccaac 280
               |||||||| |||||||||||||| |||||||| |||||| | || || |||||||  |||
Sbjct: 9175356 gacctcgatgacactctgtacccactgagctcggggatcgcgtcccatgtcaagaagaac 9175415

                   
Query: 281     attg 284
               ||||
Sbjct: 9175416 attg 9175419



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                      
Query: 385     ggcaattggctacaacttcgattacgacgagtaccacag 423
               |||||| ||||||| |||||||||||| |||||||||||
Sbjct: 9175721 ggcaataggctacagcttcgattacgatgagtaccacag 9175759



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 221      gacctcgacgacactctgtacccg 244
                |||||||||||||| |||||||||
Sbjct: 27851990 gacctcgacgacacgctgtacccg 27852013

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>gb|AC107315.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0032O19, from chromosome 3, complete sequence
          Length = 142248

 Score =  137 bits (69), Expect = 5e-29
 Identities = 90/97 (92%)
 Strand = Plus / Minus

                                                                          
Query: 290    tacatggttgagaagctgggtattgaggagagcaagatcgaaaaccttggcaacctgctg 349
              |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 110873 tacatggttgagaagctgggtattgaggagagcaagattgagaaccttggcaatctgctg 110814

                                                   
Query: 350    tataagaactatggcaccacgatggccggcctcaggg 386
              || |||||||| ||||| ||||||||||| |||||||
Sbjct: 110813 tacaagaactacggcacgacgatggccggactcaggg 110777



 Score =  125 bits (63), Expect = 2e-25
 Identities = 81/87 (93%)
 Strand = Plus / Minus

                                                                          
Query: 515    ttcaccaacggtgacatgatccatgccgtgagagccctcaagaggctgggcctggaggac 574
              ||||||||||| |||| |  ||| |||||||||||||||||||||||||| |||||||||
Sbjct: 110367 ttcaccaacggcgacaaggaccacgccgtgagagccctcaagaggctggggctggaggac 110308

                                         
Query: 575    tgcttcgaggggatcatctgcttcgag 601
              |||||||||||||||||||||||||||
Sbjct: 110307 tgcttcgaggggatcatctgcttcgag 110281



 Score =  103 bits (52), Expect = 7e-19
 Identities = 79/88 (89%)
 Strand = Plus / Minus

                                                                          
Query: 420    acagctttgtccatggaaggctgccctacgacaacatcaagcccgaccccgttctcaagc 479
              |||| |||||||||||||| ||||||||||| ||||||||||| ||||| || || ||||
Sbjct: 110549 acagttttgtccatggaagactgccctacgagaacatcaagccggaccctgtcctgaagc 110490

                                          
Query: 480    atattctcaagaacatgcgcatccgcaa 507
              | |||||||||||| |||||||||||||
Sbjct: 110489 acattctcaagaacctgcgcatccgcaa 110462



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                         
Query: 158    atcatggagttcgacgagcgctgcctcaaggtccaggaccccaagttcgactgcctgct 216
              |||||||||||||| || ||||||| |||||||||||| ||||| ||||||||||||||
Sbjct: 111224 atcatggagttcgaagaccgctgccacaaggtccaggagcccaaattcgactgcctgct 111166



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                          
Query: 221    gacctcgacgacactctgtacccgctgagctccgggatctcatcacacgtcaagaccaac 280
              |||||||| |||||||||||||| |||||||| |||||| | || || |||||||  |||
Sbjct: 111035 gacctcgatgacactctgtacccactgagctcggggatcgcgtcccatgtcaagaagaac 110976

                  
Query: 281    attg 284
              ||||
Sbjct: 110975 attg 110972



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                     
Query: 385    ggcaattggctacaacttcgattacgacgagtaccacag 423
              |||||| ||||||| |||||||||||| |||||||||||
Sbjct: 110670 ggcaataggctacagcttcgattacgatgagtaccacag 110632

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>gb|AC134238.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0016G06,
              complete sequence
          Length = 119910

 Score =  137 bits (69), Expect = 5e-29
 Identities = 90/97 (92%)
 Strand = Plus / Plus

                                                                          
Query: 290    tacatggttgagaagctgggtattgaggagagcaagatcgaaaaccttggcaacctgctg 349
              |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 118698 tacatggttgagaagctgggtattgaggagagcaagattgagaaccttggcaatctgctg 118757

                                                   
Query: 350    tataagaactatggcaccacgatggccggcctcaggg 386
              || |||||||| ||||| ||||||||||| |||||||
Sbjct: 118758 tacaagaactacggcacgacgatggccggactcaggg 118794



 Score =  125 bits (63), Expect = 2e-25
 Identities = 81/87 (93%)
 Strand = Plus / Plus

                                                                          
Query: 515    ttcaccaacggtgacatgatccatgccgtgagagccctcaagaggctgggcctggaggac 574
              ||||||||||| |||| |  ||| |||||||||||||||||||||||||| |||||||||
Sbjct: 119204 ttcaccaacggcgacaaggaccacgccgtgagagccctcaagaggctggggctggaggac 119263

                                         
Query: 575    tgcttcgaggggatcatctgcttcgag 601
              |||||||||||||||||||||||||||
Sbjct: 119264 tgcttcgaggggatcatctgcttcgag 119290



 Score =  103 bits (52), Expect = 7e-19
 Identities = 79/88 (89%)
 Strand = Plus / Plus

                                                                          
Query: 420    acagctttgtccatggaaggctgccctacgacaacatcaagcccgaccccgttctcaagc 479
              |||| |||||||||||||| ||||||||||| ||||||||||| ||||| || || ||||
Sbjct: 119022 acagttttgtccatggaagactgccctacgagaacatcaagccggaccctgtcctgaagc 119081

                                          
Query: 480    atattctcaagaacatgcgcatccgcaa 507
              | |||||||||||| |||||||||||||
Sbjct: 119082 acattctcaagaacctgcgcatccgcaa 119109



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                         
Query: 158    atcatggagttcgacgagcgctgcctcaaggtccaggaccccaagttcgactgcctgct 216
              |||||||||||||| || ||||||| |||||||||||| ||||| ||||||||||||||
Sbjct: 118347 atcatggagttcgaagaccgctgccacaaggtccaggagcccaaattcgactgcctgct 118405



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                          
Query: 221    gacctcgacgacactctgtacccgctgagctccgggatctcatcacacgtcaagaccaac 280
              |||||||| |||||||||||||| |||||||| |||||| | || || |||||||  |||
Sbjct: 118536 gacctcgatgacactctgtacccactgagctcggggatcgcgtcccatgtcaagaagaac 118595

                  
Query: 281    attg 284
              ||||
Sbjct: 118596 attg 118599



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                     
Query: 385    ggcaattggctacaacttcgattacgacgagtaccacag 423
              |||||| ||||||| |||||||||||| |||||||||||
Sbjct: 118901 ggcaataggctacagcttcgattacgatgagtaccacag 118939

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  137 bits (69), Expect = 5e-29
 Identities = 90/97 (92%)
 Strand = Plus / Plus

                                                                           
Query: 290     tacatggttgagaagctgggtattgaggagagcaagatcgaaaaccttggcaacctgctg 349
               |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 9173351 tacatggttgagaagctgggtattgaggagagcaagattgagaaccttggcaatctgctg 9173410

                                                    
Query: 350     tataagaactatggcaccacgatggccggcctcaggg 386
               || |||||||| ||||| ||||||||||| |||||||
Sbjct: 9173411 tacaagaactacggcacgacgatggccggactcaggg 9173447



 Score =  125 bits (63), Expect = 2e-25
 Identities = 81/87 (93%)
 Strand = Plus / Plus

                                                                           
Query: 515     ttcaccaacggtgacatgatccatgccgtgagagccctcaagaggctgggcctggaggac 574
               ||||||||||| |||| |  ||| |||||||||||||||||||||||||| |||||||||
Sbjct: 9173857 ttcaccaacggcgacaaggaccacgccgtgagagccctcaagaggctggggctggaggac 9173916

                                          
Query: 575     tgcttcgaggggatcatctgcttcgag 601
               |||||||||||||||||||||||||||
Sbjct: 9173917 tgcttcgaggggatcatctgcttcgag 9173943



 Score =  103 bits (52), Expect = 7e-19
 Identities = 79/88 (89%)
 Strand = Plus / Plus

                                                                           
Query: 420     acagctttgtccatggaaggctgccctacgacaacatcaagcccgaccccgttctcaagc 479
               |||| |||||||||||||| ||||||||||| ||||||||||| ||||| || || ||||
Sbjct: 9173675 acagttttgtccatggaagactgccctacgagaacatcaagccggaccctgtcctgaagc 9173734

                                           
Query: 480     atattctcaagaacatgcgcatccgcaa 507
               | |||||||||||| |||||||||||||
Sbjct: 9173735 acattctcaagaacctgcgcatccgcaa 9173762



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                          
Query: 158     atcatggagttcgacgagcgctgcctcaaggtccaggaccccaagttcgactgcctgct 216
               |||||||||||||| || ||||||| |||||||||||| ||||| ||||||||||||||
Sbjct: 9173000 atcatggagttcgaagaccgctgccacaaggtccaggagcccaaattcgactgcctgct 9173058



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                           
Query: 221     gacctcgacgacactctgtacccgctgagctccgggatctcatcacacgtcaagaccaac 280
               |||||||| |||||||||||||| |||||||| |||||| | || || |||||||  |||
Sbjct: 9173189 gacctcgatgacactctgtacccactgagctcggggatcgcgtcccatgtcaagaagaac 9173248

                   
Query: 281     attg 284
               ||||
Sbjct: 9173249 attg 9173252



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                      
Query: 385     ggcaattggctacaacttcgattacgacgagtaccacag 423
               |||||| ||||||| |||||||||||| |||||||||||
Sbjct: 9173554 ggcaataggctacagcttcgattacgatgagtaccacag 9173592



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 221      gacctcgacgacactctgtacccg 244
                |||||||||||||| |||||||||
Sbjct: 27943314 gacctcgacgacacgctgtacccg 27943337

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>emb|AJ237988.1|VVI237988 Vitis vinifera mRNA for putative ripening-related protein (grip21
           gene)
          Length = 1190

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 92/113 (81%)
 Strand = Plus / Plus

                                                                       
Query: 281 attgaagcctacatggttgagaagctgggtattgaggagagcaagatcgaaaaccttggc 340
           ||||||| ||| |||||||| ||||| || || ||| ||| ||| ||||   || | |||
Sbjct: 227 attgaagactatatggttgaaaagcttggcatagagaagaacaaaatcgctgacttgggc 286

                                                                
Query: 341 aacctgctgtataagaactatggcaccacgatggccggcctcagggcaattgg 393
           ||||| ||||| ||||| ||||| || || |||||||| ||||||||||||||
Sbjct: 287 aacctactgtacaagaattatgggacaacaatggccggtctcagggcaattgg 339

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>ref|NM_193122.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 834

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 566 ctggaggactgcttcgaggggatcatctgcttcgag 601
           |||||||| |||||||| ||||||||||||||||||
Sbjct: 391 ctggaggattgcttcgaagggatcatctgcttcgag 426

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                    
Query: 566      ctggaggactgcttcgaggggatcatctgcttcgag 601
                |||||||| |||||||| ||||||||||||||||||
Sbjct: 26274598 ctggaggattgcttcgaagggatcatctgcttcgag 26274563

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>dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0455H11
          Length = 101607

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 566   ctggaggactgcttcgaggggatcatctgcttcgag 601
             |||||||| |||||||| ||||||||||||||||||
Sbjct: 49226 ctggaggattgcttcgaagggatcatctgcttcgag 49191

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>ref|XM_469419.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1219

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 203 ttcgactgcctgctcttcgacctcgacgacactctgtacccg 244
           ||||||||| | ||||| |||||||||||||| |||||||||
Sbjct: 118 ttcgactgcgtcctctttgacctcgacgacacgctgtacccg 159

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>dbj|AK099563.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034L20, full
           insert sequence
          Length = 1147

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 203 ttcgactgcctgctcttcgacctcgacgacactctgtacccg 244
           ||||||||| | ||||| |||||||||||||| |||||||||
Sbjct: 117 ttcgactgcgtcctctttgacctcgacgacacgctgtacccg 158

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>dbj|AK061982.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-A11, full
           insert sequence
          Length = 1144

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 203 ttcgactgcctgctcttcgacctcgacgacactctgtacccg 244
           ||||||||| | ||||| |||||||||||||| |||||||||
Sbjct: 118 ttcgactgcgtcctctttgacctcgacgacacgctgtacccg 159

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>dbj|AK061528.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D11, full
           insert sequence
          Length = 1112

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 203 ttcgactgcctgctcttcgacctcgacgacactctgtacccg 244
           ||||||||| | ||||| |||||||||||||| |||||||||
Sbjct: 101 ttcgactgcgtcctctttgacctcgacgacacgctgtacccg 142

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>gb|AY108507.1| Zea mays PCO092437 mRNA sequence
          Length = 1277

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 203 ttcgactgcctgctcttcgacctcgacgacactctgtacccg 244
           ||||||||| | ||| | |||||||||||||| |||||||||
Sbjct: 138 ttcgactgcgtcctcctagacctcgacgacaccctgtacccg 179

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>gb|AC108919.7| Mus musculus chromosome 6, clone RP23-52O21, complete sequence
          Length = 141653

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 66    caaggctccacacacctctgccttc 90
             ||||| |||||||||||||||||||
Sbjct: 87739 caaggatccacacacctctgccttc 87763

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>emb|AL157935.28| Human DNA sequence from clone RP11-203J24 on chromosome 9 Contains the 5'
              end of the ENG gene for endoglin (Osler-Rendu-Weber
              syndrome 1) (END, ORW, HHT1, ORW1, CD105), the AK1 gene for
              adenylate kinase 1, the ST6GALNAC6 gene for
              CMP-NeuAC:(beta)-N-acetylgalactosaminide
              (alpha)2,6-sialyltransferase member VI (ST6GALNACVI), the
              SIAT7D gene for sialyltransferase 7D
              ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,
              3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase)
              (SIAT3C, ST6GALNAC4, ST6GALNACIV), the DPM2 gene for
              dolichyl-phosphate mannosyltransferase polypeptide 2,
              regulatory subunit (MGC21559), the gene for a novel protien
              containing FLJ00179, a novel gene and ten CpG islands,
              complete sequence
          Length = 164201

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 551    ctcaagaggctgggcctggaggactgctt 579
              |||||||| ||||| ||||||||||||||
Sbjct: 139696 ctcaagagactgggactggaggactgctt 139724

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>emb|AL033520.16|HS349A12 Human DNA sequence from clone RP3-349A12 on chromosome 6p21.31-22.2
             Contains the 3' end of gene FLJ20302, the TAF11 gene for
             TAF11 RNA polymerase II (TATA box binding protein
             (TBP)-associated factor, 28 kD), the 5' end of gene
             KIAA0229 for  novel Ank, SAM (Sterile alpha motif) and
             Phosphotyrosine interaction (PTB/PID) domain containing
             protein (KIAA0229) and a CpG island, complete sequence
          Length = 132948

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 551   ctcaagaggctgggcctggaggactgctt 579
             |||||||||||||| | ||||||||||||
Sbjct: 77572 ctcaagaggctggggcaggaggactgctt 77544

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>dbj|AK001094.1| Homo sapiens cDNA FLJ10232 fis, clone HEMBB1000244
          Length = 1654

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 551 ctcaagaggctgggcctggaggactgctt 579
           |||||||| ||||| ||||||||||||||
Sbjct: 100 ctcaagagactgggactggaggactgctt 72

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>gb|AC132812.9| Homo sapiens chromosome 17, clone RP13-104F24, complete sequence
          Length = 161139

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 551    ctcaagaggctgggcctggaggactgctt 579
              |||||||||||| | ||||||||||||||
Sbjct: 137334 ctcaagaggctgaggctggaggactgctt 137306

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>dbj|AP002992.4| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2655K5, complete
             sequence
          Length = 191589

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 551   ctcaagaggctgggcctggaggactgctt 579
             |||||||||||||| | ||||||||||||
Sbjct: 69861 ctcaagaggctggggcaggaggactgctt 69833

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>dbj|AP002813.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-856M9, complete
            sequence
          Length = 187516

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 551  ctcaagaggctgggcctggaggactgctt 579
            |||||||||||||| | ||||||||||||
Sbjct: 7652 ctcaagaggctggggcaggaggactgctt 7624

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>gb|AC009994.10| Homo sapiens chromosome 17, clone RP11-87N3, complete sequence
          Length = 188552

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 551   ctcaagaggctgggcctggaggactgctt 579
             |||||||||||| | ||||||||||||||
Sbjct: 28618 ctcaagaggctgaggctggaggactgctt 28590

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>gb|AC150242.3| Rhinolophus ferrumequinum clone VMRC7-331J24, complete sequence
          Length = 120894

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 476   aagcatattctcaagaacat 495
             ||||||||||||||||||||
Sbjct: 90123 aagcatattctcaagaacat 90142

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>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16
             map S2606, complete sequence
          Length = 124140

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 221   gacctcgacgacactctgtacccg 244
             |||||||||||||| |||||||||
Sbjct: 96120 gacctcgacgacacgctgtacccg 96143

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>gb|AY657496.1| Synthetic construct Peudomonas aeruginosa clone FLH040552.01F
           PA1143 gene, partial cds
          Length = 654

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 215 ctcttcgacctcgacgacac 234
           ||||||||||||||||||||
Sbjct: 13  ctcttcgacctcgacgacac 32

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>ref|XM_959852.1| Neurospora crassa OR74A hypothetical protein (NCU00789.1) partial
            mRNA
          Length = 2793

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 320  agcaagatcgaaaaccttgg 339
            ||||||||||||||||||||
Sbjct: 1726 agcaagatcgaaaaccttgg 1745

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>ref|XM_324968.1| Neurospora crassa OR74A hypothetical protein (NCU00789.1) partial
            mRNA
          Length = 2793

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 320  agcaagatcgaaaaccttgg 339
            ||||||||||||||||||||
Sbjct: 1726 agcaagatcgaaaaccttgg 1745

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>gb|AC122405.4| Mus musculus BAC clone RP24-119O6 from chromosome 12, complete sequence
          Length = 196285

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 552    tcaagaggctgggcctggag 571
              ||||||||||||||||||||
Sbjct: 185226 tcaagaggctgggcctggag 185207

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>ref|XM_785414.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC585596 (LOC585596), mRNA
          Length = 795

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 417 accacagctttgtccatgga 436
           ||||||||||||||||||||
Sbjct: 59  accacagctttgtccatgga 40

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>emb|BX842680.1| Neurospora crassa DNA linkage group I cosmid contig 90C4
          Length = 131439

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   agcaagatcgaaaaccttgg 339
             ||||||||||||||||||||
Sbjct: 10012 agcaagatcgaaaaccttgg 9993

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>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16
          Length = 348971

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 218    ttcgacctcgacgacactctgtacccgc 245
              |||||||||||| |||| ||||||||||
Sbjct: 345715 ttcgacctcgacaacacgctgtacccgc 345688

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>gb|AC155227.3| Rhinolophus ferrumequinum clone VMRC7-4K1, complete sequence
          Length = 160979

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 476   aagcatattctcaagaacat 495
             ||||||||||||||||||||
Sbjct: 38535 aagcatattctcaagaacat 38554

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>gb|AC115778.11| Mus musculus chromosome 8, clone RP23-148F13, complete sequence
          Length = 234778

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     ctccacacacctctgccttc 90
              ||||||||||||||||||||
Sbjct: 149059 ctccacacacctctgccttc 149078

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>emb|BX323041.9| Zebrafish DNA sequence from clone RP71-82P7 in linkage group 7,
             complete sequence
          Length = 146935

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 456   tcaagcccgaccccgttctcaagc 479
             |||||||||| |||||||||||||
Sbjct: 17675 tcaagcccgagcccgttctcaagc 17698

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>dbj|AK029746.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4930525G20 product:unclassifiable, full
            insert sequence
          Length = 2988

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 135  tagttctttccaccacagtc 154
            ||||||||||||||||||||
Sbjct: 1387 tagttctttccaccacagtc 1368

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>dbj|AK045089.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
            enriched library, clone:B130031L05 product:weakly similar
            to probable RNA-directed DNA polymerase (EC 2.7.7.49)
            (clone MH2C) (fragment) [Rattus norvegicus], full insert
            sequence
          Length = 2445

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 135  tagttctttccaccacagtc 154
            ||||||||||||||||||||
Sbjct: 1387 tagttctttccaccacagtc 1368

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>gb|AF035381.1|AF035381 Lytechinus variegatus ovoperoxidase (LvOpo) mRNA, complete cds
          Length = 3167

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 332  aaccttggcaacctgctgta 351
            ||||||||||||||||||||
Sbjct: 1717 aaccttggcaacctgctgta 1698

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>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold
          Length = 1756392

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 476     aagcatattctcaagaacat 495
               ||||||||||||||||||||
Sbjct: 1371203 aagcatattctcaagaacat 1371222

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>gb|AE004544.1| Pseudomonas aeruginosa PAO1, section 105 of 529 of the complete
            genome
          Length = 11478

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 215  ctcttcgacctcgacgacac 234
            ||||||||||||||||||||
Sbjct: 3560 ctcttcgacctcgacgacac 3541

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>gb|AY104976.1| Zea mays PCO136133 mRNA sequence
          Length = 712

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 570 aggactgcttcgaggggatcatctgcttcgag 601
           ||||||||||| | |||||| |||||||||||
Sbjct: 56  aggactgcttccaagggatcgtctgcttcgag 87

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>gb|AC125380.4| Mus musculus BAC clone RP23-204N23 from 1, complete sequence
          Length = 214005

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    tagttctttccaccacagtc 154
              ||||||||||||||||||||
Sbjct: 174925 tagttctttccaccacagtc 174906

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>emb|CT030194.5| Mouse DNA sequence from clone RP23-463F7 on chromosome 13, complete
              sequence
          Length = 195497

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    tagttctttccaccacagtc 154
              ||||||||||||||||||||
Sbjct: 182837 tagttctttccaccacagtc 182856

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>gb|AC172877.1| Brassica rapa subsp. pekinensis clone KBrH042F19, complete sequence
          Length = 108651

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 569   gaggactgcttcgaggggatcatctgcttcga 600
             |||||||||||||| || ||||| ||||||||
Sbjct: 69913 gaggactgcttcgaaggaatcatttgcttcga 69944


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,822,971
Number of Sequences: 3902068
Number of extensions: 3822971
Number of successful extensions: 67316
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67106
Number of HSP's gapped (non-prelim): 209
length of query: 601
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 578
effective length of database: 17,143,297,704
effective search space: 9908826072912
effective search space used: 9908826072912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result