ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bah63f23 |
|---|---|
| Clone Library Name | barley_pub |
>ISPG_PARUW (Q6MD85) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 654 Score = 54.7 bits (130), Expect = 2e-07 Identities = 23/35 (65%), Positives = 29/35 (82%) Frame = +3 Query: 420 RQKYCESIHQTRRRKTRTVMVGNVALGSDHPMRIQ 524 ++KYCE+IHQT RR TR V VGNV +G +HP+RIQ Sbjct: 3 QKKYCEAIHQTERRPTRIVNVGNVGIGGNHPIRIQ 37
>ISPG_PROMA (Q7VBS7) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 407 Score = 40.8 bits (94), Expect = 0.002 Identities = 16/26 (61%), Positives = 23/26 (88%) Frame = +3 Query: 447 QTRRRKTRTVMVGNVALGSDHPMRIQ 524 Q +RRKTR+VMVGN+ +GSD+P+ +Q Sbjct: 21 QIQRRKTRSVMVGNIGIGSDYPVAVQ 46
>ISPG_SYNPX (Q7U712) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 398 Score = 40.4 bits (93), Expect = 0.003 Identities = 18/26 (69%), Positives = 22/26 (84%) Frame = +3 Query: 447 QTRRRKTRTVMVGNVALGSDHPMRIQ 524 Q RR TRTVMVG+VA+GSDHP+ +Q Sbjct: 11 QIHRRITRTVMVGDVAIGSDHPVVVQ 36
>ISPG_PROMP (Q7V215) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 405 Score = 39.3 bits (90), Expect = 0.007 Identities = 16/23 (69%), Positives = 22/23 (95%) Frame = +3 Query: 456 RRKTRTVMVGNVALGSDHPMRIQ 524 RR TRTVMVG++A+GSD+P+R+Q Sbjct: 22 RRITRTVMVGDIAIGSDYPVRVQ 44
>ISPG_PROMM (Q7V7G9) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 406 Score = 38.9 bits (89), Expect = 0.009 Identities = 17/26 (65%), Positives = 20/26 (76%) Frame = +3 Query: 447 QTRRRKTRTVMVGNVALGSDHPMRIQ 524 Q RR TRTV VG V +GSDHP+R+Q Sbjct: 19 QIHRRVTRTVNVGGVLIGSDHPVRVQ 44
>ISPG_COREF (Q8FP82) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 378 Score = 37.4 bits (85), Expect = 0.025 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = +3 Query: 456 RRKTRTVMVGNVALGSDHPMRIQ 524 RRKTR +MVG+V +GSDHP+ +Q Sbjct: 5 RRKTRQLMVGSVGVGSDHPISVQ 27
>ISPG_NOCFA (Q5YS74) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 385 Score = 37.4 bits (85), Expect = 0.025 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = +3 Query: 456 RRKTRTVMVGNVALGSDHPMRIQ 524 RRKTR +MVG+V +GSDHP+ +Q Sbjct: 20 RRKTRQLMVGSVGVGSDHPVSVQ 42
>ISPG_CORDI (Q6NGL3) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 391 Score = 37.0 bits (84), Expect = 0.033 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = +3 Query: 456 RRKTRTVMVGNVALGSDHPMRIQ 524 RRKTR +MVGNV +GSD+P+ +Q Sbjct: 24 RRKTRQLMVGNVGVGSDYPVSVQ 46
>ISPG_MYCTU (O33350) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 387 Score = 37.0 bits (84), Expect = 0.033 Identities = 15/23 (65%), Positives = 19/23 (82%) Frame = +3 Query: 456 RRKTRTVMVGNVALGSDHPMRIQ 524 RR TR +MVGNV +GSDHP+ +Q Sbjct: 18 RRATRQLMVGNVGVGSDHPVSVQ 40
>ISPG_MYCBO (Q7TXN6) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 387 Score = 37.0 bits (84), Expect = 0.033 Identities = 15/23 (65%), Positives = 19/23 (82%) Frame = +3 Query: 456 RRKTRTVMVGNVALGSDHPMRIQ 524 RR TR +MVGNV +GSDHP+ +Q Sbjct: 18 RRATRQLMVGNVGVGSDHPVSVQ 40
>ISPG_CORGL (Q8NP12) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 378 Score = 37.0 bits (84), Expect = 0.033 Identities = 15/23 (65%), Positives = 19/23 (82%) Frame = +3 Query: 456 RRKTRTVMVGNVALGSDHPMRIQ 524 RRKTR +MVG V +GSDHP+ +Q Sbjct: 5 RRKTRQLMVGKVGVGSDHPISVQ 27
>IF2_STIAU (P55875) Translation initiation factor IF-2| Length = 1054 Score = 36.2 bits (82), Expect = 0.056 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = -2 Query: 340 SALPLA-DPILSAPGTERILAKSTLLV*PTPPSRT-LTYGSGAGATPVAMAMPMPKLRKL 167 +A P+A +P + AP TE +A + + PTPP+RT + SG A A P+P K Sbjct: 166 AAAPVAPEPTVEAPKTEAPVAAAPIAEAPTPPARTEVPVTSGRRAASCRGAAPLPCSGKD 225 Query: 166 AYAILQTPRST 134 A+ +P+S+ Sbjct: 226 PLALNSSPQSS 236
>ISPG_ZYMMO (Q5NR50) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 377 Score = 34.7 bits (78), Expect = 0.16 Identities = 14/23 (60%), Positives = 19/23 (82%) Frame = +3 Query: 456 RRKTRTVMVGNVALGSDHPMRIQ 524 RRK+R +MVGNVA+G D P+ +Q Sbjct: 11 RRKSRKIMVGNVAVGGDAPISVQ 33
>ISPG_CHLPN (Q9Z8H0) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 613 Score = 33.1 bits (74), Expect = 0.47 Identities = 13/23 (56%), Positives = 18/23 (78%) Frame = +3 Query: 456 RRKTRTVMVGNVALGSDHPMRIQ 524 RRKT TV +GN+ +GSDH ++ Q Sbjct: 12 RRKTHTVRIGNLYIGSDHSIKTQ 34
>ISPG_MYCLE (Q9CBU5) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 392 Score = 33.1 bits (74), Expect = 0.47 Identities = 14/23 (60%), Positives = 18/23 (78%) Frame = +3 Query: 456 RRKTRTVMVGNVALGSDHPMRIQ 524 RR TR +MVGNV +GSDH + +Q Sbjct: 18 RRITRQLMVGNVGVGSDHQISVQ 40
>ISPG_SILPO (Q5LQ99) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 375 Score = 32.7 bits (73), Expect = 0.62 Identities = 13/23 (56%), Positives = 18/23 (78%) Frame = +3 Query: 456 RRKTRTVMVGNVALGSDHPMRIQ 524 RRK+R +MVGNV +G D P+ +Q Sbjct: 14 RRKSRQIMVGNVPVGGDAPISVQ 36
>ISPG_ANASP (P58666) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 408 Score = 32.0 bits (71), Expect = 1.1 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = +3 Query: 453 RRRKTRTVMVGNVALGSDHPMRIQ 524 +RRKTR V VGNV +G +P+ +Q Sbjct: 24 KRRKTRPVKVGNVTIGGGYPVVVQ 47
>ISPG_SYNEL (Q8DK70) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 402 Score = 31.6 bits (70), Expect = 1.4 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = +3 Query: 456 RRKTRTVMVGNVALGSDHPMRIQ 524 RRKTR V +G+V +G HP+ +Q Sbjct: 19 RRKTRPVPIGSVVIGGGHPVAVQ 41
>NPW_HUMAN (Q8N729) Neuropeptide W precursor (Preproprotein L8) (hPPL8)| [Contains: Neuropeptide W-23 (NPW23) (hL8); Neuropeptide W-30 (NPW30) (hL8C)] Length = 165 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/46 (34%), Positives = 27/46 (58%) Frame = +3 Query: 333 RALVVKSSSTESDTMELEPASEGSPLLVPRQKYCESIHQTRRRKTR 470 RAL + DT+ EPA+ +PLL+P + + + +TRRR ++ Sbjct: 64 RALRAAAGPLARDTLSPEPAAREAPLLLP--SWVQELWETRRRSSQ 107
>ISPG_CHLMU (Q9PKY3) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 601 Score = 31.2 bits (69), Expect = 1.8 Identities = 13/23 (56%), Positives = 19/23 (82%) Frame = +3 Query: 456 RRKTRTVMVGNVALGSDHPMRIQ 524 RRKT +V VGN+ +GS+H ++IQ Sbjct: 11 RRKTLSVKVGNLFVGSEHSIKIQ 33
>ISPG_PSEAE (Q9HXJ4) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 371 Score = 30.8 bits (68), Expect = 2.4 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%) Frame = +3 Query: 438 SIHQTR---RRKTRTVMVGNVALGSDHPMRIQ 524 SIH RRK+R + VGNV +G D P+ +Q Sbjct: 2 SIHSASPIIRRKSRKIWVGNVPVGGDAPIAVQ 33
>ISPG_MYCPA (Q73VS3) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 388 Score = 30.8 bits (68), Expect = 2.4 Identities = 12/23 (52%), Positives = 19/23 (82%) Frame = +3 Query: 456 RRKTRTVMVGNVALGSDHPMRIQ 524 RR+TR +MV +V +GSD+P+ +Q Sbjct: 18 RRRTRQLMVRDVGVGSDYPISVQ 40
>ISPG_AQUAE (O67496) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 357 Score = 30.8 bits (68), Expect = 2.4 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = +3 Query: 453 RRRKTRTVMVGNVALGSDHPMRIQ 524 ++RKTR + VGNV +G D P+ +Q Sbjct: 3 QKRKTRQIRVGNVKIGGDAPIVVQ 26
>ISPG_HELHP (Q7VI04) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 354 Score = 30.4 bits (67), Expect = 3.1 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = +3 Query: 453 RRRKTRTVMVGNVALGSDHPMRIQ 524 +R KT+ + VGNVA+G D P+ +Q Sbjct: 2 QRVKTKQIFVGNVAVGGDAPISVQ 25
>IBB_HORVU (P12940) Bowman-Birk type trypsin inhibitor| Length = 124 Score = 30.4 bits (67), Expect = 3.1 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +2 Query: 5 PRCRCLQEHTRSQPTAPACFPASLPSAERPATR 103 P CRC+ E + PT C LPS RP+ R Sbjct: 79 PTCRCVDEVKKCAPTCKTC----LPSRSRPSRR 107
>ENV_HV1C4 (P05879) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 868 Score = 30.4 bits (67), Expect = 3.1 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%) Frame = +2 Query: 41 QPTAPACFPASLPSA---ERPATRDEGGGEAPRDGAAR 145 Q +P F LP+ +RP +EGGGE RDG+ R Sbjct: 722 QGYSPLSFQTLLPNPRGPDRPEGTEEGGGERGRDGSTR 759
>MYCLB_XENLA (P35805) L-myc B protein (L-myc 2 protein)| Length = 344 Score = 30.4 bits (67), Expect = 3.1 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = -2 Query: 349 LTTSALPLADPILSAPGTERILAKSTLLV*PTPPSRTLTYGSGAGAT 209 +T + P+AD S PG + I +T LV PTP + SG+ +T Sbjct: 108 VTNTQKPVADNETSEPGVDSIEQNATPLVVPTPIPEKVPNSSGSEST 154
>ISPG_PORGI (Q7MVT7) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 581 Score = 30.4 bits (67), Expect = 3.1 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +3 Query: 453 RRRKTRTVMVGNVALGSDHPMRIQ 524 +RRKT +G+ LG D P+RIQ Sbjct: 8 KRRKTSVAQIGDTPLGGDFPIRIQ 31
>ISPG1_STRAW (Q82K43) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1 (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 1) Length = 385 Score = 30.4 bits (67), Expect = 3.1 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = +3 Query: 456 RRKTRTVMVGNVALGSDHPMRIQ 524 RRK+R + VG VA+G D P+ +Q Sbjct: 18 RRKSRQIQVGTVAVGGDAPVSVQ 40
>ISPG_CHLAB (Q5L669) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 606 Score = 30.0 bits (66), Expect = 4.0 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +3 Query: 447 QTRRRKTRTVMVGNVALGSDHPMRIQ 524 Q RR T +V +GN+ +GSDH ++ Q Sbjct: 9 QAARRYTHSVKIGNLYVGSDHSIKTQ 34
>ISPG_CAMJR (Q5HV95) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 357 Score = 30.0 bits (66), Expect = 4.0 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +3 Query: 453 RRRKTRTVMVGNVALGSDHPMRIQ 524 +R KTR + VGNV +G D P+ +Q Sbjct: 4 KRFKTRQIKVGNVLIGGDAPISVQ 27
>ISPG_CAMJE (Q9PPM1) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 357 Score = 30.0 bits (66), Expect = 4.0 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +3 Query: 453 RRRKTRTVMVGNVALGSDHPMRIQ 524 +R KTR + VGNV +G D P+ +Q Sbjct: 4 KRFKTRQIKVGNVLIGGDAPISVQ 27
>PIV6_ADE12 (P35988) Minor capsid protein 6 precursor (Minor capsid protein VI)| [Contains: Protease cofactor] Length = 265 Score = 30.0 bits (66), Expect = 4.0 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 7/79 (8%) Frame = -2 Query: 349 LTTSALPLADPILSAPGTERILAKS-----TLLV*PTP-PSRTLTYGS-GAGATPVAMAM 191 L+ + P+ PIL P R+ K+ TL + P P P+ GS + PVA + Sbjct: 166 LSPTTYPMTKPIL--PMATRVYGKNENVPMTLELPPLPEPTIADPVGSVPVASVPVASTV 223 Query: 190 PMPKLRKLAYAILQTPRST 134 P +R +A A L+ PRS+ Sbjct: 224 SRPAVRPVAVASLRNPRSS 242
>ISPG_PSEPK (Q88PJ7) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 369 Score = 29.6 bits (65), Expect = 5.3 Identities = 11/24 (45%), Positives = 18/24 (75%) Frame = +3 Query: 453 RRRKTRTVMVGNVALGSDHPMRIQ 524 +RR++R + VGNV +G D P+ +Q Sbjct: 8 KRRESRKIWVGNVPVGGDAPIAVQ 31
>TYTR_TRYBB (P39051) Trypanothione reductase (EC 1.8.1.12) (TR)| (N(1),N(8)-bis(glutathionyl)spermidine reductase) Length = 492 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/60 (31%), Positives = 26/60 (43%) Frame = -2 Query: 400 PSEAGSSSMVSDSVLELLTTSALPLADPILSAPGTERILAKSTLLV*PTPPSRTLTYGSG 221 P A + +D +L L T + P I PG E ++ + P PP R LT G G Sbjct: 143 PKSAVKERLQADHIL--LATGSWPQMPAI---PGVEHCISSNEAFYLPEPPRRVLTVGGG 197
>ISPG_CHLCV (Q823I7) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 606 Score = 29.6 bits (65), Expect = 5.3 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +3 Query: 447 QTRRRKTRTVMVGNVALGSDHPMRIQ 524 Q RR T +V +GN+ +GS+H +++Q Sbjct: 9 QAARRHTHSVKIGNLYVGSEHSIKMQ 34
>MOT3_HUMAN (O95907) Monocarboxylate transporter 3 (MCT 3)| Length = 504 Score = 29.6 bits (65), Expect = 5.3 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Frame = -1 Query: 395 GGRLELHGIRL--CT*ALDHERPASCGPHPQRTGNGEDLGEVDALGVADASVADLDVRKR 222 GG L L G+ L C P GP P+R G+ G DA G A+A A L +R+ Sbjct: 175 GGFLLLGGLLLHCCACGAVMRPPPGPGPRPRRDSAGDRAG--DAPGEAEADGAGLQLREA 232 Query: 221 S 219 S Sbjct: 233 S 233
>ISPG_SYNY3 (P73672) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 403 Score = 29.6 bits (65), Expect = 5.3 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +3 Query: 456 RRKTRTVMVGNVALGSDHPMRIQ 524 RRKTR V VG V +G HP+ +Q Sbjct: 20 RRKTRPVPVGAVTVGGGHPVVVQ 42
>ISPG_SYNP6 (Q5N3W3) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 407 Score = 29.6 bits (65), Expect = 5.3 Identities = 12/23 (52%), Positives = 18/23 (78%) Frame = +3 Query: 456 RRKTRTVMVGNVALGSDHPMRIQ 524 RR TR+V VG++ +GS HP+ +Q Sbjct: 20 RRPTRSVRVGDIWIGSRHPVVVQ 42
>ISPG_GLUOX (Q5FUR7) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 381 Score = 29.6 bits (65), Expect = 5.3 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = +3 Query: 456 RRKTRTVMVGNVALGSDHPMRIQ 524 RRK+R + VG VA+G D P+ +Q Sbjct: 12 RRKSRQIHVGKVAVGGDAPISVQ 34
>ISPG2_STRCO (Q9KYR9) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2 (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 2) Length = 385 Score = 29.6 bits (65), Expect = 5.3 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = +3 Query: 456 RRKTRTVMVGNVALGSDHPMRIQ 524 RRK+R + VG VA+G D P+ +Q Sbjct: 18 RRKSRQIQVGPVAVGGDAPVSVQ 40
>GIDA_CHLMU (Q9PJP3) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 610 Score = 29.3 bits (64), Expect = 6.9 Identities = 18/45 (40%), Positives = 21/45 (46%) Frame = -1 Query: 371 IRLCT*ALDHERPASCGPHPQRTGNGEDLGEVDALGVADASVADL 237 + L T LD SC P G G + E+DALG A V DL Sbjct: 33 VLLLTSNLDTIAKLSCNPAVGGIGKGHIVREIDALGGVMAEVTDL 77
>ASPM_CANFA (P62286) Abnormal spindle-like microcephaly-associated protein| homolog (Fragment) Length = 3452 Score = 29.3 bits (64), Expect = 6.9 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = -2 Query: 403 LPSEAGSSSMVSDSVLELLT-TSALPLADPILSAPGTERILAKSTLLV*PTPPSRT 239 L S AG V+D++ E S LP+ DP+ S P + +I+ TPPS+T Sbjct: 515 LNSVAGEFEKVTDNIKEKDGFQSCLPVIDPVFSKPKSYKIVV--------TPPSKT 562
>ISPG_DEIRA (Q9RXC9) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 429 Score = 29.3 bits (64), Expect = 6.9 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = +3 Query: 453 RRRKTRTVMVGNVALGSDHPMRIQ 524 RRR+T +V VG V +GS HP+ +Q Sbjct: 24 RRRQTVSVNVGGVMVGSAHPIVVQ 47
>DNAJ_DEIRA (Q9RUG2) Chaperone protein dnaJ| Length = 376 Score = 28.9 bits (63), Expect = 9.0 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 3/72 (4%) Frame = +3 Query: 249 GGVGYTKSVDFAKILSVPGALRMGSARGRALVVKSSSTESD---TMELEPASEGSPLLVP 419 GGVG+ F ++ GA MG RGR + E++ T+E A E + V Sbjct: 86 GGVGFDPMDIFEQLFG--GAAGMGG-RGRRGPARGDDLETEVRITLEQARAGEEVEVTVD 142 Query: 420 RQKYCESIHQTR 455 R CE H TR Sbjct: 143 RLTECEHCHGTR 154
>NID2_HUMAN (Q14112) Nidogen-2 precursor (NID-2) (Osteonidogen)| Length = 1375 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = +2 Query: 32 TRSQP-TAPACFPASLPSAERPATRDE 109 TRSQP T PAC P P RP R + Sbjct: 1074 TRSQPGTTPACIPTVAPPMVRPTPRPD 1100
>NID2_MOUSE (O88322) Nidogen-2 precursor (NID-2) (Entactin-2)| Length = 1403 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = +2 Query: 32 TRSQP-TAPACFPASLPSAERPATRDE 109 TRSQP T PAC P P RP R + Sbjct: 1102 TRSQPGTRPACIPTVAPPVVRPTPRPD 1128
>MCPH1_PONPY (P61594) Microcephalin| Length = 839 Score = 28.9 bits (63), Expect = 9.0 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 6/49 (12%) Frame = -1 Query: 314 PQRTGNGEDLGEVDALGVADASVADLDVR------KRSRCHPGGHGYAY 186 PQ+TGNGE L + + ++S + +R K C P G+G++Y Sbjct: 484 PQKTGNGEGLATLSCVTSEESSAPEEALRCCRQAGKEDAC-PEGNGFSY 531 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,936,903 Number of Sequences: 219361 Number of extensions: 1494474 Number of successful extensions: 5613 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 5322 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5609 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
