ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63f05 |
|---|---|
| Clone Library Name | barley_pub |
>SACS_MOUSE (Q9JLC8) Sacsin| Length = 3830 Score = 40.8 bits (94), Expect = 0.004 Identities = 36/183 (19%), Positives = 83/183 (45%), Gaps = 6/183 (3%) Frame = +3 Query: 36 LAWSSAPILAKQSIIPPDFSWGAFQLRSPPAFSTVLKHLQTVGRGNGEDTLAHWPSSSGI 215 L W+S PIL +++ L VL L + + + + I Sbjct: 2949 LLWTSCPILPEKATPLSIKEQEGSDLAPQEQLEQVLNMLNVNLDPPLDKVINNCRNICNI 3008 Query: 216 MTVEDAFLRI-LQYLEKVWGTISSSGKT---ELMELAFIPVANGTRLIEAKSLFARLTI- 380 T+++ ++ + L ++ +S+ + +L +AF+ V +G +L++ + + L Sbjct: 3009 TTLDEEMVKTRAKVLRSIYEFLSAEKREFRFQLRGVAFVMVEDGWKLLKPEEVVINLEYE 3068 Query: 381 -NMSPFAFELPSLYLPFVAILREIGMQESLTNSYAKELLLDIQKACGYQRLNPNELRAVM 557 + P+ ++LP F + + +G ++ ++ E+L I K+ ++L+PNE+R V Sbjct: 3069 ADFKPYLYKLPLELGTFHQLFKHLGTEDIISTKQYVEVLSRIFKSSEGKQLDPNEMRTVK 3128 Query: 558 EIL 566 ++ Sbjct: 3129 RVV 3131
>SACS_HUMAN (Q9NZJ4) Sacsin| Length = 3829 Score = 39.3 bits (90), Expect = 0.011 Identities = 22/92 (23%), Positives = 49/92 (53%), Gaps = 2/92 (2%) Frame = +3 Query: 297 ELMELAFIPVANGTRLIEAKSLFARLTI--NMSPFAFELPSLYLPFVAILREIGMQESLT 470 +L +AF+ V +G +L++ + + L + P+ ++LP F + + +G ++ ++ Sbjct: 3040 QLRGVAFVMVEDGWKLLKPEEVVINLEYESDFKPYLYKLPLELGTFHQLFKHLGTEDIIS 3099 Query: 471 NSYAKELLLDIQKACGYQRLNPNELRAVMEIL 566 E+L I K ++L+PNE+R V ++ Sbjct: 3100 TKQYVEVLSRIFKNSEGKQLDPNEMRTVKRVV 3131
>WDR7_MOUSE (Q920I9) WD-repeat protein 7 (TGF-beta resistance-associated| protein TRAG) Length = 1489 Score = 32.3 bits (72), Expect = 1.4 Identities = 19/48 (39%), Positives = 27/48 (56%) Frame = +2 Query: 350 SKITFCSSDYQHVTFCF*TSKSVSSICCHS*RNWDAGKPYKLLCKGAS 493 SK +C + Q ++FC T +S+ +C R +DAG Y LLC G S Sbjct: 209 SKPIYCQN-CQSISFCAFTQRSLLVVCSKYWRVFDAG-DYSLLCSGPS 254
>WDR7_HUMAN (Q9Y4E6) WD-repeat protein 7 (TGF-beta resistance-associated| protein TRAG) (Rabconnectin-3 beta) Length = 1490 Score = 32.3 bits (72), Expect = 1.4 Identities = 19/48 (39%), Positives = 27/48 (56%) Frame = +2 Query: 350 SKITFCSSDYQHVTFCF*TSKSVSSICCHS*RNWDAGKPYKLLCKGAS 493 SK +C + Q ++FC T +S+ +C R +DAG Y LLC G S Sbjct: 209 SKPIYCQN-CQSISFCAFTQRSLLVVCSKYWRVFDAG-DYSLLCSGPS 254
>CSPG3_MOUSE (P55066) Neurocan core protein precursor (Chondroitin sulfate| proteoglycan 3) Length = 1268 Score = 31.6 bits (70), Expect = 2.3 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Frame = +3 Query: 54 PILAKQSIIPPDFSWGAFQLRS--PPAFSTVLKHLQTVGRGNGEDTLAHWPSS 206 P L +Q +I PDF PP + +T+G G TLA WPSS Sbjct: 391 PSLGEQEVIAPDFQEPLMSSGEGEPPDLTWTQAPEETLGSTPGGPTLASWPSS 443
>WDR7_RAT (Q9ERH3) WD-repeat protein 7 (TGF-beta resistance-associated| protein TRAG) Length = 1488 Score = 31.6 bits (70), Expect = 2.3 Identities = 19/48 (39%), Positives = 27/48 (56%) Frame = +2 Query: 350 SKITFCSSDYQHVTFCF*TSKSVSSICCHS*RNWDAGKPYKLLCKGAS 493 SK +C + Q ++FC T +S+ +C R +DAG Y LLC G S Sbjct: 209 SKPIYCQN-CQSLSFCAFTQRSLLVVCSKYWRVFDAG-DYSLLCSGPS 254
>Y24K_STRGR (P12752) Hypothetical 24.7 kDa protein in photolyase 5'region| Length = 238 Score = 31.2 bits (69), Expect = 3.0 Identities = 20/56 (35%), Positives = 27/56 (48%) Frame = +2 Query: 449 WDAGKPYKLLCKGASFRYPKSMWLPTPEPKRTPCSDGNLGLHVFRSQPAYPRRIRR 616 W +P C G+ P P+P P+R C+ G G RS+P Y RR+RR Sbjct: 18 WRTARPAPRRC-GSCRPPPPGSASPSPRPRRASCATGCCG----RSRP-YARRLRR 67
>SIRT4_HUMAN (Q9Y6E7) NAD-dependent deacetylase sirtuin-4 (EC 3.5.1.-)| (SIR2-like protein 4) Length = 314 Score = 30.4 bits (67), Expect = 5.2 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +2 Query: 491 SFRYPKSMWLPTPEPKRTPCSDGNLGLHVFRSQPAYPRRIR 613 +FR K W+ P PCS ++GL V S P P +++ Sbjct: 8 TFRSAKGRWIANPSQ---PCSKASIGLFVPASPPLDPEKVK 45
>NU133_HUMAN (Q8WUM0) Nuclear pore complex protein Nup133 (Nucleoporin Nup133)| (133 kDa nucleoporin) Length = 1156 Score = 29.6 bits (65), Expect = 8.8 Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 16/118 (13%) Frame = +3 Query: 30 WPLAWSSAPILA--KQSIIPP-DFSWGA------FQLRSPPAFSTVLKHLQTVGRGNGED 182 W +A S L+ K+ +PP DF W A + S A ST + R E Sbjct: 126 WKIALSPITKLSVCKELQLPPSDFHWSADLVALSYSSPSGEAHSTQAVAVMVATR---EG 182 Query: 183 TLAHWPSSSGIMTVEDAFL-----RILQYLEKVWG--TISSSGKTELMELAFIPVANG 335 ++ +WPS +G T +AF+ + +L V G I SS ++L+ L IP ++G Sbjct: 183 SIRYWPSLAGEDTYTEAFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIRL--IPESSG 238
>SPT23_YEAST (P35210) Protein SPT23| Length = 1082 Score = 29.6 bits (65), Expect = 8.8 Identities = 18/62 (29%), Positives = 29/62 (46%) Frame = -1 Query: 388 DMLIVRRAKSDFASIKRVPFATGINASSINSVFPEDDIVPHTFSKYCKILRKASSTVIIP 209 D ++ R K+ S PF ++ SS NS +DD H + + K L A S + P Sbjct: 803 DDILTRLTKNTTGSSDTQPFERNVSQSSFNSSLFDDDDADHDYVQERKYL-LADSAALAP 861 Query: 208 DE 203 ++ Sbjct: 862 EQ 863
>K0406_HUMAN (O43156) Protein KIAA0406| Length = 1089 Score = 29.6 bits (65), Expect = 8.8 Identities = 14/52 (26%), Positives = 27/52 (51%) Frame = +3 Query: 435 ILREIGMQESLTNSYAKELLLDIQKACGYQRLNPNELRAVMEILDYMCSGVN 590 +L + G Q L + A ++D+ +ACGY L + + DY+ +G++ Sbjct: 656 VLEKAGDQTLLISQVATSTMMDVCRACGYDSLQ----HLINQNSDYLVNGIS 703 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 105,845,852 Number of Sequences: 219361 Number of extensions: 2362490 Number of successful extensions: 6353 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 6159 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6352 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6655306086 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
