ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah63f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MAD47_ORYSA (Q5K4R0) MADS-box transcription factor 47 (OsMADS47) 30 8.0
2PURA_ENTFA (Q839Y4) Adenylosuccinate synthetase (EC 6.3.4.4) (IM... 30 8.0
3CAC1H_HUMAN (O95180) Voltage-dependent T-type calcium channel al... 30 8.0

>MAD47_ORYSA (Q5K4R0) MADS-box transcription factor 47 (OsMADS47)|
          Length = 246

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 29/120 (24%), Positives = 52/120 (43%)
 Frame = +3

Query: 219 LKIQQLQQAFAELESQSAVTMNFKWKQLEDHFRGLEQSXXXXXXXXXXXXXXXXXTVAKS 398
           L ++QLQ+    LES     +  K K++ D   GLE+                   +   
Sbjct: 138 LNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERK-----------------RMQLI 180

Query: 399 EKMLEQQEAVVVAKELTSLERLQEKRDAALAMIFGKSKLSLNTNYITPMNKPQGNYTVGT 578
           E+ L  +E + V++ ++ +E +Q   D+ +    G+S  S+ TN   P   P  +Y+  T
Sbjct: 181 EENLRLKEQLQVSR-MSRMEEMQPGPDSEIVYEEGQSSESV-TNASYPRPPPDNDYSSDT 238



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>PURA_ENTFA (Q839Y4) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 430

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 58  AFHPLDLLPQXXXXXXXXXXXXDGKLVQRLPASVKSLSPCLTWSPWLPLWS 210
           + + +D+L              DG+L+   PAS+K LS C      LP WS
Sbjct: 327 SLNSIDVLSGLETVKICTAYELDGELIYHYPASLKELSRCKPVYEELPGWS 377



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>CAC1H_HUMAN (O95180) Voltage-dependent T-type calcium channel alpha-1H subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.2)
            (Low-voltage-activated calcium channel alpha1 3.2
            subunit)
          Length = 2353

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +1

Query: 16   VCSPFLPRPALPQSAFHPLDLLPQXXXXXXXXXXXXDGKLV-QRLPASVKSLSPCLTWSP 192
            +C+   P P    S F  LD  P             D  L  Q+ PAS++S SPC  W P
Sbjct: 1078 MCTAATPMPTPKSSPF--LDAAPSLPDSRRGSSSSGDPPLGDQKPPASLRS-SPCAPWGP 1134

Query: 193  WLPLWSPQA*RYSSFSK 243
                WS +   +SS  +
Sbjct: 1135 -SGAWSSRRSSWSSLGR 1150


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,315,936
Number of Sequences: 219361
Number of extensions: 1160659
Number of successful extensions: 3204
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3203
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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