Clone Name | bah63f03 |
---|---|
Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | MAD47_ORYSA (Q5K4R0) MADS-box transcription factor 47 (OsMADS47) | 30 | 8.0 | 2 | PURA_ENTFA (Q839Y4) Adenylosuccinate synthetase (EC 6.3.4.4) (IM... | 30 | 8.0 | 3 | CAC1H_HUMAN (O95180) Voltage-dependent T-type calcium channel al... | 30 | 8.0 |
---|
>MAD47_ORYSA (Q5K4R0) MADS-box transcription factor 47 (OsMADS47)| Length = 246 Score = 29.6 bits (65), Expect = 8.0 Identities = 29/120 (24%), Positives = 52/120 (43%) Frame = +3 Query: 219 LKIQQLQQAFAELESQSAVTMNFKWKQLEDHFRGLEQSXXXXXXXXXXXXXXXXXTVAKS 398 L ++QLQ+ LES + K K++ D GLE+ + Sbjct: 138 LNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERK-----------------RMQLI 180 Query: 399 EKMLEQQEAVVVAKELTSLERLQEKRDAALAMIFGKSKLSLNTNYITPMNKPQGNYTVGT 578 E+ L +E + V++ ++ +E +Q D+ + G+S S+ TN P P +Y+ T Sbjct: 181 EENLRLKEQLQVSR-MSRMEEMQPGPDSEIVYEEGQSSESV-TNASYPRPPPDNDYSSDT 238
>PURA_ENTFA (Q839Y4) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 430 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = +1 Query: 58 AFHPLDLLPQXXXXXXXXXXXXDGKLVQRLPASVKSLSPCLTWSPWLPLWS 210 + + +D+L DG+L+ PAS+K LS C LP WS Sbjct: 327 SLNSIDVLSGLETVKICTAYELDGELIYHYPASLKELSRCKPVYEELPGWS 377
>CAC1H_HUMAN (O95180) Voltage-dependent T-type calcium channel alpha-1H subunit| (Voltage-gated calcium channel alpha subunit Cav3.2) (Low-voltage-activated calcium channel alpha1 3.2 subunit) Length = 2353 Score = 29.6 bits (65), Expect = 8.0 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Frame = +1 Query: 16 VCSPFLPRPALPQSAFHPLDLLPQXXXXXXXXXXXXDGKLV-QRLPASVKSLSPCLTWSP 192 +C+ P P S F LD P D L Q+ PAS++S SPC W P Sbjct: 1078 MCTAATPMPTPKSSPF--LDAAPSLPDSRRGSSSSGDPPLGDQKPPASLRS-SPCAPWGP 1134 Query: 193 WLPLWSPQA*RYSSFSK 243 WS + +SS + Sbjct: 1135 -SGAWSSRRSSWSSLGR 1150 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,315,936 Number of Sequences: 219361 Number of extensions: 1160659 Number of successful extensions: 3204 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 3124 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3203 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)