>MUS81_XENTR (Q640B4) Crossover junction endonuclease MUS81 (EC 3.1.22.-)|
          Length = 612

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 18/188 (9%)
 Frame = +1

Query: 43  LVERKSVTDLVSSIRDSRYKDQXXXXXXXXXXXXIYLVE--GDPNPLGASES-IKTACFT 213
           +VERK + DL  SI D R+++Q            IYLVE  G    L   E+ ++ A   
Sbjct: 393 VVERKRMDDLCGSIIDGRFREQKFRLKRCGLRRPIYLVEDHGSAQHLSIPETTLQQAIVN 452

Query: 214 SEILEGFDVQRTTGYSDTERTYGHLTLSIIDYYSMKFSIGAN---------------TSR 348
           +++++GF ++RT    ++      +T  +   YS K  +                  +S 
Sbjct: 453 TQVVDGFFIKRTKDVRESAAYLTIMTRYLQGIYSRKSLLSCTKEEEWKCDRSLRPDASSC 512

Query: 349 VCLTYDEFVKKCCDPKKLTVSDIFALQLMQVPQVTEETAIAVIELYPTLVSLARAYSMLD 528
           + + + +F +     K  TV ++FA QLMQ+  V+ E A A++E Y T  SL  AY   +
Sbjct: 513 ILVEFKDFNEGAMKNKAQTVKEVFARQLMQISGVSGEKAAAILEKYSTPASLMSAY---E 569

Query: 529 GDSPAQEK 552
             S A+EK
Sbjct: 570 SCSSAEEK 577

>MUS81_KLULA (Q6CPQ8) Crossover junction endonuclease MUS81 (EC 3.1.22.-)|
          Length = 614

 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 28/210 (13%)
 Frame = +1

Query: 43   LVERKSVTDLVSSIRDSRYKDQXXXXXXXXXXXXIYLVEGDP--NPLGASESIKTACFTS 216
            +VERK + DLV SIRD+R+ +Q             YLVE     N   +++ +KT+ +T+
Sbjct: 389  IVERKRLDDLVISIRDNRFSEQKNRLQKTGCKHIFYLVEETTGYNVSDSADMMKTSIWTT 448

Query: 217  EILEGFDVQRTTGYSDTERTYGHLTLSIIDYYSMKFSIGANTSRV--------------- 351
             I   F ++RT     T +    ++L I + YS K  +  N   +               
Sbjct: 449  VIYNDFHIKRTRNADTTVQWLTDMSLIIKELYSRKSLVVINHDHITNQSIYLTSLKMFRT 508

Query: 352  ----------CLTYDEFVKKCCDPKKLTVSDIFALQLMQVPQVTEETAIAVIELYPTLVS 501
                      C  Y+           +TV +++   LM V  ++ E A+ +   YPT  +
Sbjct: 509  EFERNKEIECCHNYESMQSAMVKTNLMTVKELYLRALMSVKGISLEKALMIQSRYPTFKT 568

Query: 502  LARAYSMLDGDSPAQEKMLN-MKSKDGERR 588
            L +AY     ++ A+  + N +K   G R+
Sbjct: 569  LLKAYRRCAAEADAKTLIQNELKDAPGNRK 598

>MUS81_MOUSE (Q91ZJ0) Crossover junction endonuclease MUS81 (EC 3.1.22.-)|
          Length = 551

 Score = 66.2 bits (160), Expect = 8e-11
 Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 19/177 (10%)
 Frame = +1

Query: 43  LVERKSVTDLVSSIRDSRYKDQXXXXXXXXXXXXIYLVE--GDPNPLGASES-IKTACFT 213
           +VERK + DL SSI D R+++Q            +YLVE  G  + L   ES +  A   
Sbjct: 331 IVERKRLDDLCSSIIDGRFREQKFRLKRCGLGHRVYLVEEHGSVHNLSLPESTLLQAVTN 390

Query: 214 SEILEGFDVQRTTGYSDTERTYGHLTLSIIDYY--------------SMKFSIGANTSRV 351
           +++++GF V+RT    ++      LT  +   Y              + +     +T+ +
Sbjct: 391 TQVIDGFFVKRTMDIKESVGYLALLTKGLERLYQGHTLRSRPWGAPGAAESEAKPSTNPL 450

Query: 352 C--LTYDEFVKKCCDPKKLTVSDIFALQLMQVPQVTEETAIAVIELYPTLVSLARAY 516
           C  LT+ +F  +    K  +V ++FA QLMQV  ++ E A AV++ Y T  SL  AY
Sbjct: 451 CSLLTFSDFNAEAVKNKAQSVREVFARQLMQVRGLSGEKAAAVVDRYSTPASLLAAY 507

>MUS81_RAT (Q4KM32) Crossover junction endonuclease MUS81 (EC 3.1.22.-)|
          Length = 551

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 19/177 (10%)
 Frame = +1

Query: 43  LVERKSVTDLVSSIRDSRYKDQXXXXXXXXXXXXIYLVE--GDPNPLGASES-IKTACFT 213
           +VERK + DL SSI D R+++Q            IYLVE  G    L   ES +  A   
Sbjct: 331 IVERKRLDDLCSSIIDGRFREQKFRLKRCGLGHRIYLVEEHGSVQNLSLPESTLLQAVTN 390

Query: 214 SEILEGFDVQRTTGYSDTERTYGHLTLSIIDYYS--------------MKFSIGANTSRV 351
           +++++GF V+RT    ++      LT  +   Y                +     +T+ +
Sbjct: 391 TQVIDGFFVKRTMDIKESAGYLALLTKGLERLYQGHTLHSRPWGTPGDAESEAKPSTNPL 450

Query: 352 C--LTYDEFVKKCCDPKKLTVSDIFALQLMQVPQVTEETAIAVIELYPTLVSLARAY 516
           C  LT+ +F  +    K  +V ++FA QLMQV  ++ E A A+++ Y T  SL  AY
Sbjct: 451 CSLLTFSDFNAEAVKNKAQSVREVFARQLMQVRGLSGEKAAALVDRYSTPASLLAAY 507

>MUS81_HUMAN (Q96NY9) Crossover junction endonuclease MUS81 (EC 3.1.22.-)|
          Length = 551

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 19/177 (10%)
 Frame = +1

Query: 43  LVERKSVTDLVSSIRDSRYKDQXXXXXXXXXXXXIYLVE--GDPNPLGASES-IKTACFT 213
           +VERK + DL SSI D R+++Q            +YLVE  G  + L   ES +  A   
Sbjct: 331 IVERKRLDDLCSSIIDGRFREQKFRLKRCGLERRVYLVEEHGSVHNLSLPESTLLQAVTN 390

Query: 214 SEILEGFDVQRTTGYSDTERTYGHLTLSIIDYYSMKF------------SIGANTSR--V 351
           +++++GF V+RT    ++      LT  +   Y                  GA TS   +
Sbjct: 391 TQVIDGFFVKRTADIKESAAYLALLTRGLQRLYQGHTLRSRPWGTPGNPESGAMTSPNPL 450

Query: 352 C--LTYDEFVKKCCDPKKLTVSDIFALQLMQVPQVTEETAIAVIELYPTLVSLARAY 516
           C  LT+ +F       K  +V ++FA QLMQV  V+ E A A+++ Y T  SL  AY
Sbjct: 451 CSLLTFSDFNAGAIKNKAQSVREVFARQLMQVRGVSGEKAAALVDRYSTPASLLAAY 507

>MUS81_SCHPO (P87231) Crossover junction endonuclease mus81 (EC 3.1.22.-)|
          Length = 608

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
 Frame = +1

Query: 43  LVERKSVTDLVSSIRDSRYKDQXXXXXXXXXXXXIYLVEGDPNPLGASESIKTACFTSEI 222
           +VERK   DLV+SI+D R+ +Q             Y++E        +ESI+TA   +++
Sbjct: 388 VVERKRYDDLVASIKDGRFHEQKARLKKSGIRSVTYILEESSYDESFTESIRTAVSNTQV 447

Query: 223 LEGFDVQRTTGYSDTERTYGHLTLSIIDYYSMK--------FSIGANT------------ 342
            + F V+ T     +      +T  I  +Y  +         SI A T            
Sbjct: 448 DQLFHVRHTRSLEHSVSLLAEMTKQINLFYEKRKTLAVIPDLSIEAKTYESLREQLLKID 507

Query: 343 --SRVCLTYDEFVKKCCDPKKLTVSDIFALQLMQVPQVTEETAIAVIELYPTLVSLARAY 516
             +   ++Y  F         LTV DIF   LM +  ++   AI + + YPT + L  AY
Sbjct: 508 PSTPYHISYHAFSSVLSKSSTLTVGDIFIRMLMTIKGISASKAIEIQKKYPTFMHLFEAY 567

Query: 517 SMLDGDSPAQEKML 558
              +  S +QE+ L
Sbjct: 568 ---EKSSSSQERNL 578

>MUS81_BRARE (Q7SXA9) Crossover junction endonuclease MUS81 (EC 3.1.22.-)|
          Length = 604

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 26/201 (12%)
 Frame = +1

Query: 43  LVERKSVTDLVSSIRDSRYKDQXXXXXXXXXXXXIYLVEGDPNP---LGASES-IKTACF 210
           ++ERK + DL  SI D R+++Q            IYLVE   +    L   ES ++ A  
Sbjct: 382 IIERKRMDDLCGSIIDGRFREQKFRLKRCGLRKPIYLVEECGSAAAHLSIPESTLQQAIV 441

Query: 211 TSEILEGFDVQRTTGYSDTERTYGHLTLSIIDYYSMKF---------------------- 324
            +++++GF V+R     D + +  +LT  I+  Y  K                       
Sbjct: 442 NTQVVDGFFVKRV---QDAKESAAYLT--IMTRYLQKLYQNCTLLCRSRELEGDGEAESE 496

Query: 325 SIGANTSRVCLTYDEFVKKCCDPKKLTVSDIFALQLMQVPQVTEETAIAVIELYPTLVSL 504
            + AN S   + + EF       K  TV ++FA QLMQ+  V+ + A AV++ Y T+ SL
Sbjct: 497 KMVANLSCSLMAFTEFNYGAIKNKCQTVREVFARQLMQISGVSGDKAAAVLKHYSTVSSL 556

Query: 505 ARAYSMLDGDSPAQEKMLNMK 567
            +AY     ++  ++ + ++K
Sbjct: 557 LQAYDKCSSETEKEKLLSSVK 577

>MUS81_ASHGO (Q754C9) Crossover junction endonuclease MUS81 (EC 3.1.22.-)|
          Length = 604

 Score = 59.7 bits (143), Expect = 7e-09
 Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 28/186 (15%)
 Frame = +1

Query: 43  LVERKSVTDLVSSIRDSRYKDQXXXXXXXXXXXXIYLVE--GDPNPLGASESIKTACFTS 216
           ++ERK + DL  SIRD+R+ +Q             YLVE     N  G   +IKT+ + +
Sbjct: 378 MLERKRLDDLAMSIRDNRFMEQKNRLKKTGCKHIFYLVEETSGTNVAGMEGAIKTSIWMT 437

Query: 217 EILEGFDVQRTTGYSDTERTYGHLTLSIIDYYSMK------------------------- 321
            +  GF V+RT    DT      +T ++  YY  K                         
Sbjct: 438 YVYSGFHVKRTRNADDTVEWLHDMTCTVQRYYCSKSLLVLRPREIANQEDYGSLLSAFRL 497

Query: 322 -FSIGANTSRVCLTYDEFVKKCCDPKKLTVSDIFALQLMQVPQVTEETAIAVIELYPTLV 498
            F     +   C  +D + +       +TV +++   LM    V+ E A+A+   +PTL 
Sbjct: 498 QFERNNTSLECCHAFDCYQEVLGKTGLMTVKELYIRTLMLNRGVSLEKALAIQSKFPTLR 557

Query: 499 SLARAY 516
           SL  A+
Sbjct: 558 SLMTAF 563

>MUS81_GIBZE (Q4INS6) Crossover junction endonuclease MUS81 (EC 3.1.22.-)|
          Length = 581

 Score = 59.7 bits (143), Expect = 7e-09
 Identities = 45/182 (24%), Positives = 85/182 (46%), Gaps = 24/182 (13%)
 Frame = +1

Query: 43  LVERKSVTDLVSSIRDSRYKDQXXXXXXXXXXXXIYLVEG---DPNPLGA-SESIKTACF 210
           +VERK + DL+ SI+D R+ +Q            IY++E    DP  +   +E++++A  
Sbjct: 355 IVERKRLDDLIGSIKDGRFHEQKFRLQRSGVKKVIYIIEEIGMDPEVINRYAEAVRSAIA 414

Query: 211 TSEILEGFDVQRTTGYSDT-----------ERTYGHLTLSII--------DYYSMKFSIG 333
           +++++ G+ V+RT    DT           +RTY   +L +I        +Y  +   + 
Sbjct: 415 STQVVNGYFVKRTNKMDDTIRYLTRMTAMLKRTYESRSLHVIPTKVLTSQNYLPLLKHLR 474

Query: 334 ANTS-RVCLTYDEFVKKCCDPKKLTVSDIFALQLMQVPQVTEETAIAVIELYPTLVSLAR 510
            + S    +TY  F       + +T+ D+F   LM +  VT E A+ + + + T     +
Sbjct: 475 ESISPDWYITYPAFSSLASKSESITLRDVFLKMLMTIKGVTGEKALEIQKCWKTPYDFVK 534

Query: 511 AY 516
           A+
Sbjct: 535 AF 536

>MUS81_YEAST (Q04149) Crossover junction endonuclease MUS81 (EC 3.1.22.-) (MMS and|
            UV sensitive protein 81)
          Length = 632

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 55/201 (27%), Positives = 85/201 (42%), Gaps = 27/201 (13%)
 Frame = +1

Query: 43   LVERKSVTDLVSSIRDSRYKDQXXXXXXXXXXXXIYLVEG--DPNPLGASESIKTACFTS 216
            +VERK + DL  SIRD+R+ +Q             YL+E     N    +E++KTA +  
Sbjct: 407  IVERKRLDDLALSIRDNRFMEQKNRLEKSGCEHKYYLIEETMSGNIGNMNEALKTALWVI 466

Query: 217  EILEGFDVQRTTGYSDTERTYGHLTLSIIDYYSMKFSIGANTS---------RVCLTY-D 366
             +   F + RT    +T      L   I  +YS K  I    S         +V L +  
Sbjct: 467  LVYYKFSMIRTCNSDETVEKIHALHTVISHHYSQKDLIVIFPSDLKSKDDYKKVLLQFRR 526

Query: 367  EFVKK----CCDPKKL-----------TVSDIFALQLMQVPQVTEETAIAVIELYPTLVS 501
            EF +K    CC   +            TV ++    LM V  ++ E A+A+ E++PTL  
Sbjct: 527  EFERKGGIECCHNLECFQELMGKGDLKTVGELTIHVLMLVKGISLEKAVAIQEIFPTLNK 586

Query: 502  LARAYSMLDGDSPAQEKMLNM 564
            +  AY     +  A+  M N+
Sbjct: 587  ILMAYKTCSSEEEAKLLMFNV 607

>MUS81_NEUCR (Q7SD49) Crossover junction endonuclease mus-81 (EC 3.1.22.-)|
          Length = 645

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 44/217 (20%), Positives = 95/217 (43%), Gaps = 29/217 (13%)
 Frame = +1

Query: 43   LVERKSVTDLVSSIRDSRYKDQXXXXXXXXXXXXIYLVEGDPNPLGA----SESIKTACF 210
            +VERK + DL+ SI+D R+++Q            +Y++E     +       +++ TA  
Sbjct: 418  IVERKRLDDLIGSIKDGRFREQKYRLKRSGMKNVVYIIENYNIDMDIRRQYQDAMDTAMA 477

Query: 211  TSEILEGFDVQRTTGYSDTERTYGHLTLSIIDYYSMK--FSIGAN--------------- 339
            + +++ G+ +++T   +++ R    +T  + + Y  K  F I                  
Sbjct: 478  SIQVVNGYFLKKTDTIAESIRYLAAVTYMLKEIYESKPLFVIPTQVLTAKNYLPLVKHLR 537

Query: 340  ----TSRVCLTYDEFVKKCCDPKKLTVSDIFALQLMQVPQVTEETAIAVIELYPTLVSLA 507
                +    ++Y  F       + +T+ D+F   LM + +++ E AI + +++ T   L 
Sbjct: 538  EKEPSRGYYISYPAFASLVSKSEMMTLKDVFIKMLMCIRRLSGEKAIEIQKVWKTPYQLV 597

Query: 508  RAYSMLDGDSPAQEK----MLNMKSKDGERRG*QKYL 606
            +A+     D   ++K    +++M S   +RR   K L
Sbjct: 598  KAFEACGSDENGKKKQKVLVMSMLSHLVDRRNVDKGL 634

>MUS81_EMENI (Q5B8L2) Crossover junction endonuclease mus81 (EC 3.1.22.-)|
          Length = 677

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 49/216 (22%), Positives = 83/216 (38%), Gaps = 44/216 (20%)
 Frame = +1

Query: 43   LVERKSVTDLVSSIRDSRYKDQXXXXXXXXXXXXIYLVE------GDPNPLGAS---ESI 195
            +VERK + DL+ SI+D R+ +Q            IYL+E       + N   A    + +
Sbjct: 432  IVERKRLDDLIGSIKDGRFHEQKFRLRRSGIKNVIYLIEEFAVTHHESNAAAAQKYHDMV 491

Query: 196  KTACFTSEILEGFDVQRTTGYSDTERTYGHLTLSIIDYYSMKFSIGANTS---------- 345
             +A   ++++ G+ V+RT    DT R    +T  + + YS      + TS          
Sbjct: 492  ASAIAQTQVVNGYFVKRTKNLDDTIRYLARMTFLLRNMYSAPSPPSSRTSARPSHTLALL 551

Query: 346  -------------------------RVCLTYDEFVKKCCDPKKLTVSDIFALQLMQVPQV 450
                                        +T+  F         LT+ DIF   LM    V
Sbjct: 552  PTRHLALSSSHISALNTLRAENPHVTYGVTFPTFCAIASKSDALTLRDIFLKMLMCTKGV 611

Query: 451  TEETAIAVIELYPTLVSLARAYSMLDGDSPAQEKML 558
            + + A+ +  ++PT  +  RA+  L  D   +E M+
Sbjct: 612  SGDKALEIQRVWPTPQAFIRAFEELT-DPKQKENMV 646

>MUS81_ASPFU (Q4WYE5) Crossover junction endonuclease mus81 (EC 3.1.22.-)|
          Length = 596

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 34/196 (17%)
 Frame = +1

Query: 43  LVERKSVTDLVSSIRDSRYKDQXXXXXXXXXXXXIYLVE--------GDPNPLGASESIK 198
           +VERK + DL+ SI+D R+ +Q            IYL+E        G  + +   E + 
Sbjct: 364 IVERKRMDDLLGSIKDGRFHEQKFRLRRSGIKNVIYLIEEFAITHDVGSASAMKYQEMMA 423

Query: 199 TACFTSEILEGFDVQRTTGYSDTERTYGHL---------------TLSII---------D 306
           +A  +++++ G+ V++T    DT R    +               TLS+I          
Sbjct: 424 SAIASTQVVNGYFVKQTRNLDDTIRYLARMTYLLQKMYCFSPPTHTLSLIPSRQLSSAQS 483

Query: 307 YYSMKFSIGANTSRV--CLTYDEFVKKCCDPKKLTVSDIFALQLMQVPQVTEETAIAVIE 480
           Y +    + A    V   +T+  F         L++ D+F   LM    VT E A+A+ +
Sbjct: 484 YLTTLERLRARDPSVTYSVTFSTFSALTSKSDILSLRDVFLKMLMCTRGVTGEKALAIQK 543

Query: 481 LYPTLVSLARAYSMLD 528
            + T      A+  LD
Sbjct: 544 RWSTPREFVEAFERLD 559

>MUS81_CANGA (Q6FYA6) Crossover junction endonuclease MUS81 (EC 3.1.22.-)|
          Length = 628

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 30/216 (13%)
 Frame = +1

Query: 43   LVERKSVTDLVSSIRDSRYKDQXXXXXXXXXXXXIYLVEGDPNPLGAS-----ESIKTAC 207
            ++ERK + DL  SIRD+R+ +Q             YL+E     +G+S     +++KT  
Sbjct: 404  IIERKRLDDLAMSIRDNRFMEQKNRLEKSGCKHKYYLIE---ETIGSSIGNMADALKTTL 460

Query: 208  FTSEILEGFDVQRTTGYSDTE-----------RTYGHLTLSII--------DYYSMKFSI 330
            +   +   F + RT    D+             +Y H  L ++        D+Y    SI
Sbjct: 461  WIILVYYRFSMIRTVNAEDSVDKLHALHTVICESYKHKALVVLYPTDLKSQDHYRGILSI 520

Query: 331  GAN------TSRVCLTYDEFVKKCCDPKKLTVSDIFALQLMQVPQVTEETAIAVIELYPT 492
              N          C T+D F       +  T+ +I    LM V  V+ E A+ +   +PT
Sbjct: 521  FQNEFERSGNLECCHTFDTFQDIMGKRELKTIKEITIHILMLVRGVSLEKAVFIQRHFPT 580

Query: 493  LVSLARAYSMLDGDSPAQEKMLNMKSKDGERRG*QK 600
            L  L  AY   +      E  L M  K G   G +K
Sbjct: 581  LNHLLNAYRKCNSQ---MEAKLMMFQKFGNAPGAKK 613

>MUS81_DEBHA (Q6BJ48) Crossover junction endonuclease MUS81 (EC 3.1.22.-)|
          Length = 651

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 33/196 (16%)
 Frame = +1

Query: 4   RHEEISY*VCS*LLVERKSVTDLVSSIRDSRYKDQXXXXXXXXXXXXIYLVE----GDPN 171
           +H++    V    + ERK + DLVSSI+D R+++Q             YLVE     D N
Sbjct: 404 KHKKTGREVILNYICERKRLDDLVSSIKDGRFQEQKNRLKKSGMKQFYYLVEDVVTSDMN 463

Query: 172 PLG-ASESIKTACFTSEILEGFDVQRTTGYSDTERTYGHLTLSIIDYYS--------MKF 324
             G  S++I+TA   +  +  F ++R     DT      LT  I D ++        +K 
Sbjct: 464 KFGDMSDAIQTAMSMTMTISNFYLKRFKSIEDTIAFLASLTQVIKDQFAKNKTNLLVLKA 523

Query: 325 SIGANTSRVCLTYDEFVKK---------CC-----------DPKKLTVSDIFALQLMQVP 444
               N +   L   +F +K         C                +TV + F L LM + 
Sbjct: 524 RSIKNQAEYSLLIAKFKEKFENRLTLYECAHLFSTFQDSMGKTGMMTVKETFILMLMGIR 583

Query: 445 QVTEETAIAVIELYPT 492
            V+ E A+A+   + T
Sbjct: 584 GVSLERAVAIQNRFKT 599

>MUS81_CANAL (Q59NG5) Crossover junction endonuclease MUS81 (EC 3.1.22.-)|
          Length = 614

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 44/191 (23%), Positives = 70/191 (36%), Gaps = 33/191 (17%)
 Frame = +1

Query: 43  LVERKSVTDLVSSIRDSRYKDQXXXXXXXXXXXXIYLVEG---------DPNPLGASESI 195
           L ERK + DL  SI+D R+++Q             YLVE          D      S   
Sbjct: 380 LCERKRLDDLCDSIKDGRFQEQKNRMKKTGIKHCYYLVEDMVSYQDKVYDLMDSIQSSLT 439

Query: 196 KTACFTSEILEGF-DVQRTTGY--SDT--------------------ERTYGHLTLSIID 306
           +T       L  F D+  TT +  S+T                    ++ Y ++ L   +
Sbjct: 440 QTMTTARLYLRRFKDIDETTAFIASNTKVIENLKSNLIVIKPQDIKNQQDYLNILLKFRN 499

Query: 307 YYSMKFSIGANTSRVCL-TYDEFVKKCCDPKKLTVSDIFALQLMQVPQVTEETAIAVIEL 483
            +        N    C+  +  F        ++TV ++F L LM +  V+ E A+ +   
Sbjct: 500 KFEKTQPHQDNPDYECVQLFSRFQDMLGKTNQMTVKEMFILMLMTIRGVSLEKAVVIQNR 559

Query: 484 YPTLVSLARAY 516
           +PT  SL   Y
Sbjct: 560 FPTPKSLLEYY 570

>EME1_MOUSE (Q8BJW7) Crossover junction endonuclease EME1 (EC 3.1.22.-)|
          Length = 570

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = +1

Query: 415 IFALQLMQVPQVTEETAIAVIELYPTLVSLARAYSMLDGDSPAQEKMLNMKSKDGE 582
           I+  Q+ Q+ +V+ E A A+++ YP+   L +AY     +   Q  + +++ + GE
Sbjct: 481 IWRRQIQQLNRVSSEMASAIVDAYPSPQLLVQAYQRCFSEQERQNLLADIQVRRGE 536

>EME1_HUMAN (Q96AY2) Crossover junction endonuclease EME1 (EC 3.1.22.-) (hMMS4)|
          Length = 570

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +1

Query: 415 IFALQLMQVPQVTEETAIAVIELYPTLVSLARAYSMLDGDSPAQEKMLNMKSKDGE 582
           ++  Q+ Q+ +V+ E A AV+  YP+   L +AY     D   Q  + +++ + GE
Sbjct: 481 VWRRQIQQLNRVSLEMASAVVNAYPSPQLLVQAYQQCFSDKERQNLLADIQVRRGE 536

>KDC2_DROME (P16912) Protein kinase DC2 (EC 2.7.11.1)|
          Length = 583

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +1

Query: 301 IDYYSMKFSIGANT-SRVCLTYDEFVKKCCDPKKLTVSDIFALQLMQVPQVTEETAIAVI 477
           +D Y +  ++G  T  RVCL  D   +K C  K L ++++  ++L Q+  V  E  I   
Sbjct: 271 LDDYQIIKTVGTGTFGRVCLCRDRISEKYCAMKILAMTEV--IRLKQIEHVKNERNILRE 328

Query: 478 ELYPTLVSL 504
             +P ++SL
Sbjct: 329 IRHPFVISL 337

>YCX9_CHLRE (Q32065) Hypothetical 341.7 kDa protein in psbD-psbC intergenic|
           region (ORF2971) (ORFB)
          Length = 2971

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 535 YRHQAWSMP-EQVRQVSGRAL*LQLQFLLSPVVPA*VEGR 419
           +R+ AWS+  +Q R  +G  L LQL + L P VPA   G+
Sbjct: 211 FRNTAWSLQTQQHRSSNGINLSLQLPYALGPSVPAGASGQ 250

>EME1_PONPY (Q5NVA9) Crossover junction endonuclease EME1 (EC 3.1.22.-)|
          Length = 575

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +1

Query: 415 IFALQLMQVPQVTEETAIAVIELYPTLVSLARAYSMLDGDSPAQEKMLNMKSKDGE 582
           ++  Q+ Q+ +V+ E A AV+  YP+   L +AY     +   Q  + +++ + GE
Sbjct: 486 VWRRQIQQLNRVSLEMASAVVNAYPSPQLLVQAYRQCFSEQERQNLLADIQVRRGE 541


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,941,202
Number of Sequences: 219361
Number of extensions: 1542180
Number of successful extensions: 3250
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3240
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)