ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63e23 |
|---|---|
| Clone Library Name | barley_pub |
>CAHC_HORVU (P40880) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 324 Score = 267 bits (683), Expect = 8e-72 Identities = 134/150 (89%), Positives = 134/150 (89%) Frame = +3 Query: 3 STAAANWCYATVAPRARSSTIAASLGTPAPSSSASFRPKLIRTTXXXXXXXXXXXXXXXX 182 STAAANWCYATVAPRARSSTIAASLGTPAPSSSASFRPKLIRTT Sbjct: 68 STAAANWCYATVAPRARSSTIAASLGTPAPSSSASFRPKLIRTTPVQAAPVAPALMDAAV 127 Query: 183 ERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIR 362 ERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIR Sbjct: 128 ERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIR 187 Query: 363 NIANMVPAYCKNKYAGVGSAIEYAVCALKV 452 NIANMVPAYCKNKYAGVGSAIEYAVCALKV Sbjct: 188 NIANMVPAYCKNKYAGVGSAIEYAVCALKV 217
>CAHC_SPIOL (P16016) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 319 Score = 124 bits (310), Expect = 1e-28 Identities = 59/90 (65%), Positives = 70/90 (77%) Frame = +3 Query: 183 ERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIR 362 +R+K GF KFK E Y+K P + L GQAPK+MVFAC+DSRVCPS L +PGEAF +R Sbjct: 113 QRIKEGFIKFKKEKYEKNPALYGELSKGQAPKFMVFACSDSRVCPSHVLDFQPGEAFMVR 172 Query: 363 NIANMVPAYCKNKYAGVGSAIEYAVCALKV 452 NIANMVP + K+KYAGVG+AIEYAV LKV Sbjct: 173 NIANMVPVFDKDKYAGVGAAIEYAVLHLKV 202
>CAHC_TOBAC (P27141) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 321 Score = 123 bits (309), Expect = 2e-28 Identities = 58/90 (64%), Positives = 69/90 (76%) Frame = +3 Query: 183 ERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIR 362 E +K GF FKTE Y+K P + L GQ+PK+MVFAC+DSRVCPS L +PGEAF +R Sbjct: 115 EHMKAGFIHFKTEKYEKNPALYGELSKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFVVR 174 Query: 363 NIANMVPAYCKNKYAGVGSAIEYAVCALKV 452 NIANMVPAY K +Y+GVG+AIEYAV LKV Sbjct: 175 NIANMVPAYDKTRYSGVGAAIEYAVLHLKV 204
>CAHX_FLABR (P46511) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 330 Score = 120 bits (301), Expect = 2e-27 Identities = 55/90 (61%), Positives = 70/90 (77%) Frame = +3 Query: 183 ERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIR 362 ER+K+GF KFKTE + P ++ L GQ+PK+MVFAC+DSRVCPS L +PGEAF +R Sbjct: 124 ERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVR 183 Query: 363 NIANMVPAYCKNKYAGVGSAIEYAVCALKV 452 N+ANMVP + K KY+GVG+A+EYAV LKV Sbjct: 184 NVANMVPPFDKTKYSGVGAAVEYAVLHLKV 213
>CAHX_FLABI (P46510) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 330 Score = 120 bits (301), Expect = 2e-27 Identities = 55/90 (61%), Positives = 70/90 (77%) Frame = +3 Query: 183 ERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIR 362 ER+K+GF KFKTE + P ++ L GQ+PK+MVFAC+DSRVCPS L +PGEAF +R Sbjct: 124 ERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVR 183 Query: 363 NIANMVPAYCKNKYAGVGSAIEYAVCALKV 452 N+ANMVP + K KY+GVG+A+EYAV LKV Sbjct: 184 NVANMVPPFDKTKYSGVGAAVEYAVLHLKV 213
>CAH1_FLALI (P46512) Carbonic anhydrase 1 (EC 4.2.1.1) (Carbonate dehydratase| 1) Length = 330 Score = 120 bits (301), Expect = 2e-27 Identities = 55/90 (61%), Positives = 70/90 (77%) Frame = +3 Query: 183 ERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIR 362 ER+K+GF KFKTE + P ++ L GQ+PK+MVFAC+DSRVCPS L +PGEAF +R Sbjct: 124 ERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVR 183 Query: 363 NIANMVPAYCKNKYAGVGSAIEYAVCALKV 452 N+ANMVP + K KY+GVG+A+EYAV LKV Sbjct: 184 NVANMVPPFDKTKYSGVGAAVEYAVLHLKV 213
>CAHX_FLAPR (P46281) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 329 Score = 120 bits (300), Expect = 2e-27 Identities = 55/90 (61%), Positives = 70/90 (77%) Frame = +3 Query: 183 ERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIR 362 ER+K+GF KFKTE + P ++ L GQ+PK+MVFAC+DSRVCPS L +PGEAF +R Sbjct: 123 ERIKSGFVKFKTEKFVTNPVLYDELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVR 182 Query: 363 NIANMVPAYCKNKYAGVGSAIEYAVCALKV 452 N+ANMVP + K KY+GVG+A+EYAV LKV Sbjct: 183 NVANMVPPFDKTKYSGVGAAVEYAVLHLKV 212
>CAHC_PEA (P17067) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) [Contains: Carbonic anhydrase, 27 kDa isoform; Carbonic anhydrase, 25 kDa isoform] Length = 328 Score = 118 bits (296), Expect = 6e-27 Identities = 56/90 (62%), Positives = 67/90 (74%) Frame = +3 Query: 183 ERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIR 362 ER+KTGF FK E YDK P + L GQ+P +MVFAC+DSRVCPS L +PGEAF +R Sbjct: 122 ERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVR 181 Query: 363 NIANMVPAYCKNKYAGVGSAIEYAVCALKV 452 N+AN+VP Y + KYAG G+AIEYAV LKV Sbjct: 182 NVANLVPPYDQAKYAGTGAAIEYAVLHLKV 211
>CAH2_ARATH (P42737) Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase| 2) Length = 259 Score = 117 bits (294), Expect = 1e-26 Identities = 66/135 (48%), Positives = 77/135 (57%) Frame = +3 Query: 48 ARSSTIAASLGTPAPSSSASFRPKLIRTTXXXXXXXXXXXXXXXXERLKTGFEKFKTEVY 227 A+ I A L + S S SF P ER+K GF FK E Y Sbjct: 29 AKVKKITAELQAASSSDSKSFDP---------------------VERIKEGFVTFKKEKY 67 Query: 228 DKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMVPAYCKNKYA 407 + P + L GQ+PKYMVFAC+DSRVCPS L PG+AF +RNIANMVP + K KYA Sbjct: 68 ETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYA 127 Query: 408 GVGSAIEYAVCALKV 452 GVG+AIEYAV LKV Sbjct: 128 GVGAAIEYAVLHLKV 142
>CAHC_ARATH (P27140) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 347 Score = 116 bits (290), Expect = 3e-26 Identities = 56/90 (62%), Positives = 66/90 (73%) Frame = +3 Query: 183 ERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIR 362 E +K GF KFK E Y+ P + L GQ+PKYMVFAC+DSRVCPS L +PG+AF +R Sbjct: 130 ETIKQGFIKFKKEKYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFQPGDAFVVR 189 Query: 363 NIANMVPAYCKNKYAGVGSAIEYAVCALKV 452 NIANMVP + K KY GVG+AIEYAV LKV Sbjct: 190 NIANMVPPFDKVKYGGVGAAIEYAVLHLKV 219
>CAH2_FLALI (P46513) Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase| 2) (Fragment) Length = 190 Score = 93.6 bits (231), Expect = 2e-19 Identities = 44/72 (61%), Positives = 54/72 (75%) Frame = +3 Query: 237 PDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMVPAYCKNKYAGVG 416 P + L GQ+PK++VFAC+DSRVCPS L +PGEAF +RNIANMVP Y K++G G Sbjct: 2 PTLYGELAKGQSPKFLVFACSDSRVCPSHILDFQPGEAFVVRNIANMVPPYDTIKHSGAG 61 Query: 417 SAIEYAVCALKV 452 +AIEYAV LKV Sbjct: 62 AAIEYAVLHLKV 73
>CYNT_ECOLI (P0ABE9) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 219 Score = 73.2 bits (178), Expect = 3e-13 Identities = 35/85 (41%), Positives = 53/85 (62%) Frame = +3 Query: 198 GFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANM 377 GF KF+ E + K+ F+ L Q+P+ + +C+DSR+ P + EPG+ F IRN N+ Sbjct: 7 GFLKFQREAFPKREALFKQLATQQSPRTLFISCSDSRLVPELVTQREPGDLFVIRNAGNI 66 Query: 378 VPAYCKNKYAGVGSAIEYAVCALKV 452 VP+Y GV +++EYAV AL+V Sbjct: 67 VPSYGPEP-GGVSASVEYAVAALRV 90
>CYNT_ECO57 (P0ABF0) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 219 Score = 73.2 bits (178), Expect = 3e-13 Identities = 35/85 (41%), Positives = 53/85 (62%) Frame = +3 Query: 198 GFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANM 377 GF KF+ E + K+ F+ L Q+P+ + +C+DSR+ P + EPG+ F IRN N+ Sbjct: 7 GFLKFQREAFPKREALFKQLATQQSPRTLFISCSDSRLVPELVTQREPGDLFVIRNAGNI 66 Query: 378 VPAYCKNKYAGVGSAIEYAVCALKV 452 VP+Y GV +++EYAV AL+V Sbjct: 67 VPSYGPEP-GGVSASVEYAVAALRV 90
>CYNT_SYNY3 (Q54735) Carbonic anhydrase (EC 4.2.1.1)| Length = 274 Score = 69.3 bits (168), Expect = 4e-12 Identities = 35/90 (38%), Positives = 52/90 (57%) Frame = +3 Query: 183 ERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIR 362 +RL G +KF+ + D FE L GQ P+ + C+DSRV P++ E G+ F IR Sbjct: 2 QRLIEGLQKFREGYFSSHRDLFEQLSHGQHPRILFICCSDSRVDPNLITQSEVGDLFVIR 61 Query: 363 NIANMVPAYCKNKYAGVGSAIEYAVCALKV 452 N N++P Y G G+A+EYA+ AL++ Sbjct: 62 NAGNIIPPYGAAN-GGEGAAMEYALVALEI 90
>CYNT_SYNP7 (P27134) Carbonic anhydrase (EC 4.2.1.1)| Length = 272 Score = 64.7 bits (156), Expect = 1e-10 Identities = 32/89 (35%), Positives = 47/89 (52%) Frame = +3 Query: 186 RLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRN 365 +L G F+T Y D FE GQ P+ + C+DSR+ P++ GE F IRN Sbjct: 3 KLIEGLRHFRTSYYPSHRDLFEQFAKGQHPRVLFITCSDSRIDPNLITQSGMGELFVIRN 62 Query: 366 IANMVPAYCKNKYAGVGSAIEYAVCALKV 452 N++P + G G++IEYA+ AL + Sbjct: 63 AGNLIPPFGAAN-GGEGASIEYAIAALNI 90
>CYNT_HELPJ (Q9ZN54) Carbonic anhydrase (EC 4.2.1.1)| Length = 221 Score = 58.2 bits (139), Expect = 1e-08 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Frame = +3 Query: 198 GFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANM 377 G +F+ Y++ + +E LK Q P + +C DSRV P++ G +PGE + IRN+ N+ Sbjct: 6 GALEFQENEYEEFKELYESLKTKQKPHTLFISCVDSRVVPNLITGTQPGELYVIRNMGNV 65 Query: 378 VPAYCKNKYA-GVGSAIEYAVCALKV 452 +P K + +++EYA+ + V Sbjct: 66 IPPKTSYKESLSTIASVEYAIAHVGV 91
>CAN_SHIFL (P61518) Carbonic anhydrase 2 (EC 4.2.1.1)| Length = 220 Score = 55.1 bits (131), Expect = 8e-08 Identities = 31/75 (41%), Positives = 42/75 (56%) Frame = +3 Query: 228 DKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMVPAYCKNKYA 407 ++ P FFE L Q P+++ C+DSRV GLEPGE F RN+AN+V N Sbjct: 20 EEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCL- 78 Query: 408 GVGSAIEYAVCALKV 452 S ++YAV L+V Sbjct: 79 ---SVVQYAVDVLEV 90
>CAN_ECOLI (P61517) Carbonic anhydrase 2 (EC 4.2.1.1)| Length = 220 Score = 55.1 bits (131), Expect = 8e-08 Identities = 31/75 (41%), Positives = 42/75 (56%) Frame = +3 Query: 228 DKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMVPAYCKNKYA 407 ++ P FFE L Q P+++ C+DSRV GLEPGE F RN+AN+V N Sbjct: 20 EEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCL- 78 Query: 408 GVGSAIEYAVCALKV 452 S ++YAV L+V Sbjct: 79 ---SVVQYAVDVLEV 90
>CYNT_HELPY (O24855) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 221 Score = 53.1 bits (126), Expect = 3e-07 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Frame = +3 Query: 198 GFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANM 377 G +F+ Y++ + +E LK Q P + +C DSRV P++ G +PGE + I N+ N+ Sbjct: 6 GALEFQENEYEELKELYESLKTKQKPHTLFISCVDSRVVPNLITGTKPGELYVICNMGNV 65 Query: 378 VPAYCKNKYA-GVGSAIEYAVCALKV 452 P K + ++IEYA+ + V Sbjct: 66 NPPKTSYKESLSTIASIEYAIAHVGV 91
>CAN_HAEIN (P45148) Carbonic anhydrase 2 (EC 4.2.1.1)| Length = 229 Score = 47.4 bits (111), Expect = 2e-05 Identities = 28/75 (37%), Positives = 38/75 (50%) Frame = +3 Query: 228 DKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMVPAYCKNKYA 407 ++ +F+ L Q P Y+ C+DSRV LEPGE F RN+AN V N Sbjct: 20 EENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGELFVHRNVANQVIHTDFNCL- 78 Query: 408 GVGSAIEYAVCALKV 452 S ++YAV LK+ Sbjct: 79 ---SVVQYAVDVLKI 90
>NCE3_YEAST (P53615) Non-classical export protein 3| Length = 221 Score = 44.7 bits (104), Expect = 1e-04 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Frame = +3 Query: 207 KFKTEVYDKKPDFFEPLKA-GQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMVP 383 K+ +++ + +P F A GQ+P + C+DSR + LG+ PGE FT +N+AN+ Sbjct: 27 KWASQMNNIQPTLFPDHNAKGQSPHTLFIGCSDSRYNENC-LGVLPGEVFTWKNVANI-- 83 Query: 384 AYCKNKYAGVGSAIEYAVCALKV 452 C ++ + + +E+A+ LKV Sbjct: 84 --CHSEDLTLKATLEFAIICLKV 104
>NFM_BOVIN (O77788) Neurofilament triplet M protein (160 kDa neurofilament| protein) (Neurofilament medium polypeptide) (NF-M) Length = 925 Score = 33.1 bits (74), Expect = 0.33 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = +1 Query: 319 RSPWALSPVRPSPSATSPTWSRPTARTSTPVLDRP-SNTPSARS 447 +SP A SP SP A SPT PTA+ +PV P + +P A+S Sbjct: 628 KSPTAKSPEAKSPEAKSPTAKSPTAK--SPVAKSPTAKSPEAKS 669 Score = 30.8 bits (68), Expect = 1.7 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 4/53 (7%) Frame = +1 Query: 301 TRVCARRSPWALSPVRPSPSATSPTWSRPTARTST---PVLDRP-SNTPSARS 447 T+ +SP A SP SP+A SPT P A++ T P P + +P+A+S Sbjct: 627 TKSPTAKSPEAKSPEAKSPTAKSPTAKSPVAKSPTAKSPEAKSPEAKSPTAKS 679 Score = 30.4 bits (67), Expect = 2.2 Identities = 17/43 (39%), Positives = 24/43 (55%) Frame = +1 Query: 319 RSPWALSPVRPSPSATSPTWSRPTARTSTPVLDRPSNTPSARS 447 +SP A SP SP A SP PTA++ T + +P+A+S Sbjct: 653 KSPVAKSPTAKSPEAKSPEAKSPTAKSPT------AKSPAAKS 689 Score = 30.0 bits (66), Expect = 2.8 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +1 Query: 319 RSPWALSPVRPSPSATSPTWSRPTARTSTP 408 +SP A SP SP+A SPT P A++ P Sbjct: 663 KSPEAKSPEAKSPTAKSPTAKSPAAKSPAP 692 Score = 29.3 bits (64), Expect = 4.8 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%) Frame = +1 Query: 319 RSPWALSPVRPSPSATSPTWSRPTARTST---PVLDRP-SNTPSARS 447 +SP A SP SP+A SP P A++ T P P + +P+A+S Sbjct: 618 KSPVAKSPTTKSPTAKSPEAKSPEAKSPTAKSPTAKSPVAKSPTAKS 664
>VGP3_EBVP3 (P68344) Envelope glycoprotein GP340 (Membrane antigen) (MA)| Length = 886 Score = 33.1 bits (74), Expect = 0.33 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%) Frame = +1 Query: 295 APTRVCARRSPWALSPV----RPSPSATSPTWSR--PTARTSTPVLDRPSNTPS 438 +PT +P A SP P+P+ATSPT + PT+ +TP + S TP+ Sbjct: 508 SPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPA 561
>VGP3_EBVA8 (P68343) Envelope glycoprotein GP340 (Membrane antigen) (MA)| Length = 886 Score = 33.1 bits (74), Expect = 0.33 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%) Frame = +1 Query: 295 APTRVCARRSPWALSPV----RPSPSATSPTWSR--PTARTSTPVLDRPSNTPS 438 +PT +P A SP P+P+ATSPT + PT+ +TP + S TP+ Sbjct: 508 SPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPA 561
>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory element-binding| protein) (NRE-binding protein) (DBP-5) (Bax antagonist selected in saccharomyces 1) (BASS1) Length = 2426 Score = 32.7 bits (73), Expect = 0.44 Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 6/59 (10%) Frame = +1 Query: 292 RAPTRVCARRSPWALSPVRPS--PSATSPTWSR----PTARTSTPVLDRPSNTPSARSR 450 R +R RR +++SP R S PS S T SR P+ R+ TP R S TPS RSR Sbjct: 1937 RRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTP--SRRSRTPSRRSR 1993
>POZP3_HUMAN (Q6PJE2) POM121 and ZP3 fusion protein (POM-ZP3)| Length = 329 Score = 31.6 bits (70), Expect = 0.97 Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 7/59 (11%) Frame = +1 Query: 295 APTRVCARRSPWALSPVRPSPSATSPTWSRPTART-------STPVLDRPSNTPSARSR 450 AP R P P RP+P +T P S PT R TP+L RPS PS R R Sbjct: 16 APEGQDLRNRPGRRPPARPAPRSTPP--SPPTHRVHHFYPSLPTPLL-RPSGRPSPRDR 71
>PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) (P145) Length = 1229 Score = 31.6 bits (70), Expect = 0.97 Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 7/59 (11%) Frame = +1 Query: 295 APTRVCARRSPWALSPVRPSPSATSPTWSRPTART-------STPVLDRPSNTPSARSR 450 AP R P P RP+P +T P S PT R TP+L RPS PS R R Sbjct: 139 APEGQDLRNRPGRRPPARPAPRSTPP--SPPTHRVHHFYPSLPTPLL-RPSGRPSPRDR 194
>IF2_COREF (Q8FPA7) Translation initiation factor IF-2| Length = 964 Score = 30.0 bits (66), Expect = 2.8 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = +1 Query: 295 APTRVCARRSPWALSPVRPSPSATSPTWSRPTA-RTSTPVLDRPSNTPSAR 444 AP A P P P P+A P ++PTA + +TP P+ +A+ Sbjct: 97 APKPGTAAAKPTPAKPAAPKPTAAKPAPAKPTAPKPATPAFSGPTPGDAAK 147
>GP10_DICDI (Q06885) Glycoprotein gp100 precursor (P29F8)| Length = 544 Score = 30.0 bits (66), Expect = 2.8 Identities = 18/51 (35%), Positives = 28/51 (54%) Frame = +1 Query: 298 PTRVCARRSPWALSPVRPSPSATSPTWSRPTARTSTPVLDRPSNTPSARSR 450 PT ++ P +SP P P TSPT S+PT+ + P++TP+ S+ Sbjct: 132 PTSTPSQTIPPTVSPTVP-PQTTSPT-SKPTSTPTPTSTPTPTSTPTPTSQ 180
>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2| Length = 1033 Score = 26.6 bits (57), Expect(2) = 3.6 Identities = 22/66 (33%), Positives = 27/66 (40%) Frame = +2 Query: 134 PRPGRARRTCIDGRRRGAPQDRVREVQDRGLRQEARFLRAAQGRPGAQVHGVRVRRLACV 313 P+PG G R GAP+ G + R + QGRPG Q G +R Sbjct: 164 PKPG--------GARPGAPKPGGARPSGPG---QDRGQQGGQGRPGGQRPGAPAQR---- 208 Query: 314 PVGHPG 331 P G PG Sbjct: 209 PGGRPG 214 Score = 21.6 bits (44), Expect(2) = 3.6 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = +3 Query: 33 TVAPRARSSTIAASLGTPAPSSSASFRP 116 + AP+A ++ A+ PAP+ S RP Sbjct: 100 SAAPKAPAAQQPAAPSAPAPAPSQGPRP 127
>VGP3_EBV (P03200) Envelope glycoprotein GP340/GP220 (Membrane antigen) (MA)| Length = 907 Score = 29.6 bits (65), Expect = 3.7 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%) Frame = +1 Query: 295 APTRVCARRSPWALSPV----RPSPSATSPTWSR--PTARTSTPVLDRPSNT 432 +PT +P A SP P+P+ATSPT + PT+ +TP + S T Sbjct: 522 SPTPAVTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPT 573
>TRA1_CAEBR (Q17308) Sex-determining transformer protein 1| Length = 1165 Score = 29.6 bits (65), Expect = 3.7 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = +1 Query: 334 LSPVRPSPSATSPTWSRPTARTSTPV-LDRPSNTPSA 441 ++P+ P + T P +S P +TPV +D P++ P+A Sbjct: 583 ITPLTPMGATTGPMFSMPNIMMTTPVRMDIPTSVPAA 619
>SON_MOUSE (Q9QX47) SON protein| Length = 2404 Score = 29.3 bits (64), Expect = 4.8 Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 2/47 (4%) Frame = +1 Query: 316 RRSPWALSPVRPS--PSATSPTWSRPTARTSTPVLDRPSNTPSARSR 450 RR +++SP R S PS S T P+ R+ TP R S TPS RSR Sbjct: 1930 RRRSFSISPSRRSRTPSRRSRT---PSRRSRTP--SRRSRTPSRRSR 1971
>COBV_PSEDE (P29936) Cobalamin synthase (EC 2.-.-.-)| Length = 262 Score = 29.3 bits (64), Expect = 4.8 Identities = 15/33 (45%), Positives = 23/33 (69%) Frame = +3 Query: 3 STAAANWCYATVAPRARSSTIAASLGTPAPSSS 101 S AA W ++++ P ARSS +AAS G P P+++ Sbjct: 157 SRAAMVWHWSSLPP-ARSSGVAASAGEPEPAAT 188
>ZO2_HUMAN (Q9UDY2) Tight junction protein ZO-2 (Zonula occludens 2 protein)| (Zona occludens 2 protein) (Tight junction protein 2) Length = 1190 Score = 29.3 bits (64), Expect = 4.8 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +1 Query: 298 PTRVCARRSPWALSPVRPSPSATSPTWSRPTARTSTPV 411 P+ V +P A + P P A PT+ R + STP+ Sbjct: 1019 PSAVAGNETPGASTKGYPPPVAAKPTFGRSILKPSTPI 1056
>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) Length = 1752 Score = 29.3 bits (64), Expect = 4.8 Identities = 20/53 (37%), Positives = 31/53 (58%) Frame = +1 Query: 289 SRAPTRVCARRSPWALSPVRPSPSATSPTWSRPTARTSTPVLDRPSNTPSARS 447 S +PT + + SP PS SATSP++S PT+ + +P PS +P++ S Sbjct: 1584 SYSPTSPSYSPTSPSYSPTSPSYSATSPSYS-PTSPSYSPT--SPSYSPTSPS 1633
>YA28_SCHPO (Q09699) Hypothetical protein C2F7.08c in chromosome I| Length = 632 Score = 29.3 bits (64), Expect = 4.8 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = +2 Query: 194 DRVREVQDRGLRQEARFLRAAQGRPGAQVHGVRVRRLACVPVGH 325 D E QDRG +EAR +R QGR HG+ + L +P H Sbjct: 366 DAEMERQDRGYDREARRMRRRQGR---AKHGIMLPDLRDIPKIH 406
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 29.3 bits (64), Expect = 4.8 Identities = 15/28 (53%), Positives = 17/28 (60%) Frame = +1 Query: 355 PSATSPTWSRPTARTSTPVLDRPSNTPS 438 PS SPT PT STP +PS+TPS Sbjct: 4377 PSTPSPT---PTPSKSTPTPSKPSSTPS 4401
>TCF19_MACMU (Q5TM48) Transcription factor 19| Length = 345 Score = 29.3 bits (64), Expect = 4.8 Identities = 17/51 (33%), Positives = 21/51 (41%) Frame = +1 Query: 289 SRAPTRVCARRSPWALSPVRPSPSATSPTWSRPTARTSTPVLDRPSNTPSA 441 S AP S +LS +RP P SP+W P + N PSA Sbjct: 167 SPAPKATLILNSIGSLSKLRPQPLTFSPSWGGPRSLPVPAPPGEVGNAPSA 217
>IF2_BRUME (Q8YEB3) Translation initiation factor IF-2| Length = 959 Score = 29.3 bits (64), Expect = 4.8 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = +2 Query: 155 RTCIDGRRRGAPQDRVREVQDRGLRQEARFLRAAQGRPGAQVHGVRVRRLA 307 R+ +D RRR + ++REV++R E RA + A+ H RR A Sbjct: 153 RSEMDARRRALEEAQIREVEERARAVEEAKRRAEEDARRAKEHEESARRQA 203
>SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor| Length = 307 Score = 28.9 bits (63), Expect = 6.3 Identities = 14/49 (28%), Positives = 21/49 (42%) Frame = +1 Query: 286 CSRAPTRVCARRSPWALSPVRPSPSATSPTWSRPTARTSTPVLDRPSNT 432 C+ T P P P+ T PT ++PT T+ P +P+ T Sbjct: 140 CTTPTTTKPTTTKPTTTKPTTTKPTTTKPTTTKPT--TTKPTTTKPTTT 186
>TCF19_PANTR (Q7YR48) Transcription factor 19 (Transcription factor SC1)| Length = 345 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/51 (33%), Positives = 21/51 (41%) Frame = +1 Query: 289 SRAPTRVCARRSPWALSPVRPSPSATSPTWSRPTARTSTPVLDRPSNTPSA 441 S AP S +LS +RP P SP+W P + TPSA Sbjct: 167 SPAPKATLILNSIGSLSKLRPQPLTFSPSWGGPKSLPVPAPPGEVGTTPSA 217
>TCF19_HUMAN (Q9Y242) Transcription factor 19 (Transcription factor SC1)| Length = 345 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/51 (33%), Positives = 21/51 (41%) Frame = +1 Query: 289 SRAPTRVCARRSPWALSPVRPSPSATSPTWSRPTARTSTPVLDRPSNTPSA 441 S AP S +LS +RP P SP+W P + TPSA Sbjct: 167 SPAPKATLILNSIGSLSKLRPQPLTFSPSWGGPKSLPVPAPPGEVGTTPSA 217
>EXTN_MAIZE (P14918) Extensin precursor (Proline-rich glycoprotein)| Length = 267 Score = 28.9 bits (63), Expect = 6.3 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +1 Query: 322 SPWALSPVRPSPSATSPTWSRPTARTSTPVLDRPSNTPSAR 444 +P P P+P T PT++ P+ + TP P+ TPS + Sbjct: 165 TPSPKPPTHPTPKPTPPTYT-PSPKPPTPKPTPPTYTPSPK 204
>Y1315_MYCBO (P64798) Hypothetical protein Mb1315| Length = 163 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +3 Query: 228 DKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMV 380 D F PL + + AC D+R+ LG++ GEA IRN +V Sbjct: 13 DYASGFKGPLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVV 63
>Y1284_MYCTU (P64797) Hypothetical protein Rv1284/MT1322| Length = 163 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +3 Query: 228 DKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMV 380 D F PL + + AC D+R+ LG++ GEA IRN +V Sbjct: 13 DYASGFKGPLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVV 63
>CHI2_COCIM (P54197) Endochitinase 2 precursor (EC 3.2.1.14)| Length = 860 Score = 28.9 bits (63), Expect = 6.3 Identities = 16/32 (50%), Positives = 17/32 (53%) Frame = +1 Query: 352 SPSATSPTWSRPTARTSTPVLDRPSNTPSARS 447 SPS T T S PT +T D PS T S RS Sbjct: 476 SPSTTISTKSAPTGTVTTRSQDLPSTTISTRS 507
>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1887 Score = 28.5 bits (62), Expect = 8.2 Identities = 20/51 (39%), Positives = 28/51 (54%) Frame = +1 Query: 289 SRAPTRVCARRSPWALSPVRPSPSATSPTWSRPTARTSTPVLDRPSNTPSA 441 S +PT S + SP P S TSP++S PT+ TPV PS +P++ Sbjct: 1684 SYSPTSPSYSPSSPSYSPTSPCYSPTSPSYS-PTSPNYTPV--TPSYSPTS 1731
>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1852 Score = 28.5 bits (62), Expect = 8.2 Identities = 20/53 (37%), Positives = 30/53 (56%) Frame = +1 Query: 289 SRAPTRVCARRSPWALSPVRPSPSATSPTWSRPTARTSTPVLDRPSNTPSARS 447 S +PT + + SP PS S TSP++S PT+ + +P PS +PS+ S Sbjct: 1618 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSP--SSPSYSPSSPS 1667 Score = 28.5 bits (62), Expect = 8.2 Identities = 20/53 (37%), Positives = 30/53 (56%) Frame = +1 Query: 289 SRAPTRVCARRSPWALSPVRPSPSATSPTWSRPTARTSTPVLDRPSNTPSARS 447 S +PT + + SP PS S TSP++S PT+ + +P PS +PS+ S Sbjct: 1611 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPT--SPSYSPSSPS 1660
>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)| Length = 1513 Score = 28.5 bits (62), Expect = 8.2 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = +1 Query: 349 PSPSATSPTWSRPTARTSTPVLDRPSNTPS 438 P+ S TSPT S PT T++P S TPS Sbjct: 1440 PTTSTTSPTTS-PTTSTTSPTTSTTSPTPS 1468
>RD23C_ARATH (Q84L31) Putative DNA repair protein RAD23-3 (RAD23-like protein 3)| (AtRAD23-3) Length = 419 Score = 28.5 bits (62), Expect = 8.2 Identities = 18/53 (33%), Positives = 24/53 (45%) Frame = +1 Query: 289 SRAPTRVCARRSPWALSPVRPSPSATSPTWSRPTARTSTPVLDRPSNTPSARS 447 S +P + +P A +P RP P A +PT P A T T P P+ S Sbjct: 105 SISPQTPASVSAPVAPAPTRPPPPAPTPT-PAPVAATETVTTPIPEPVPATIS 156
>EFG_NITOC (Q3J8R1) Elongation factor G (EF-G)| Length = 697 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +2 Query: 182 GAPQDRVREVQDRGLRQEARFLRAAQGR 265 GAPQ RE R + QE +F+R + GR Sbjct: 482 GAPQVAYRETIRRSIEQEGKFVRQSGGR 509
>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 28.5 bits (62), Expect = 8.2 Identities = 17/43 (39%), Positives = 27/43 (62%) Frame = +1 Query: 319 RSPWALSPVRPSPSATSPTWSRPTARTSTPVLDRPSNTPSARS 447 RSP +P PS S TSP++S PT+ + +P P+ +P++ S Sbjct: 1603 RSPGGYTPQSPSYSPTSPSYS-PTSPSYSPT--SPNYSPTSPS 1642
>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 28.5 bits (62), Expect = 8.2 Identities = 17/43 (39%), Positives = 27/43 (62%) Frame = +1 Query: 319 RSPWALSPVRPSPSATSPTWSRPTARTSTPVLDRPSNTPSARS 447 RSP +P PS S TSP++S PT+ + +P P+ +P++ S Sbjct: 1603 RSPGGYTPQSPSYSPTSPSYS-PTSPSYSPT--SPNYSPTSPS 1642
>RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (Fragment) Length = 902 Score = 28.5 bits (62), Expect = 8.2 Identities = 20/53 (37%), Positives = 30/53 (56%) Frame = +1 Query: 289 SRAPTRVCARRSPWALSPVRPSPSATSPTWSRPTARTSTPVLDRPSNTPSARS 447 S +PT + + SP PS S TSP++S PT+ + +P PS +PS+ S Sbjct: 825 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSP--SSPSYSPSSPS 874 Score = 28.5 bits (62), Expect = 8.2 Identities = 20/53 (37%), Positives = 30/53 (56%) Frame = +1 Query: 289 SRAPTRVCARRSPWALSPVRPSPSATSPTWSRPTARTSTPVLDRPSNTPSARS 447 S +PT + + SP PS S TSP++S PT+ + +P PS +PS+ S Sbjct: 818 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPT--SPSYSPSSPS 867
>SYA_RHIME (P27866) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 887 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = -1 Query: 365 VADGEGLTGLKAQGDRRAHTRV 300 +A E TG+KA+GDRRA RV Sbjct: 254 IAASEEATGVKAEGDRRASHRV 275
>ENAH_MOUSE (Q03173) Protein enabled homolog (NPC-derived proline-rich protein| 1) (NDPP-1) Length = 802 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +1 Query: 331 ALSPVRPSPSATSPTWSRPTAR--TSTPVLDRPSNTPSAR 444 A +P +P T W R + +PV+ RP +TPS++ Sbjct: 714 AKAPSTSTPEPTRKPWERTNTMNGSKSPVISRPKSTPSSQ 753
>YEY8_YEAST (P40095) Hypothetical 63.7 kDa protein in BEM2-NCB1 intergenic| region Length = 573 Score = 28.5 bits (62), Expect = 8.2 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +3 Query: 6 TAAANWCYATVAPRARSSTIAASLGTPAPSSSAS 107 TA+ +T A SS I +S+ +PAPSSS+S Sbjct: 422 TASVPSSLSTTTDAANSSFINSSISSPAPSSSSS 455
>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RPB1) (Fragment) Length = 467 Score = 28.5 bits (62), Expect = 8.2 Identities = 17/43 (39%), Positives = 27/43 (62%) Frame = +1 Query: 319 RSPWALSPVRPSPSATSPTWSRPTARTSTPVLDRPSNTPSARS 447 RSP +P PS S TSP++S PT+ + +P P+ +P++ S Sbjct: 100 RSPGGYTPQSPSYSPTSPSYS-PTSPSYSPT--SPNYSPTSPS 139 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,240,414 Number of Sequences: 219361 Number of extensions: 931976 Number of successful extensions: 4617 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 3951 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4537 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
