>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (mLark)
          Length = 361

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = -3

Query: 520 AAHAAAVEGQCPGGGARSGGADHAPLHERVGLVNVVAAGPGHGH 389
           AA AAA    C        G D +PL    G V  V  G G+GH
Sbjct: 283 AAAAAAAAAACTAASTSYYGRDRSPLRRATGPVLTVGEGYGYGH 326

>THIC_NEIMA (Q9JWF3) Thiamine biosynthesis protein thiC|
          Length = 633

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 2/136 (1%)
 Frame = +2

Query: 170 IKYQYANYSANYLKGGKGSIRLQLINQRADFSFALFTGGLENPKLVSVSKKVMFKNPKAP 349
           I+++Y N    YL+G +  IR+ L   R D ++    G   NP +       ++ +P A 
Sbjct: 27  IRFKYPNSERVYLQGSRDDIRVPLREIRQDDTYTA-QGAEANPPIPVYDTSGVYGDPAAH 85

Query: 350 VFPRLAQGKTHDEMTVTWTSGYDVNEAYPFV--EWGMVGAAGTRTPAGTLTFNRGSMCGE 523
           +   L QG  H  +   W       E  P +  E+G+  A   +T    L FN+      
Sbjct: 86  I--DLKQGLPH--IRTVWLDERGDTEILPKLSSEYGIERAHDPKT--AHLRFNQ---ITR 136

Query: 524 PARTVGWRDPGFIHTA 571
           P R    R+   +H A
Sbjct: 137 PRRAKAGRNVTQLHYA 152

>NIFA_AZOLI (P54929) Nif-specific regulatory protein|
          Length = 624

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 552 GSLHPTVRAGSPHMLPRLKVSVPAGVRVPAAPTMP 448
           G L P++  GS + +P  +  VPA    P AP MP
Sbjct: 466 GGLAPSMGPGSVNRVPPGRPGVPAPANAPKAPAMP 500

>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 4 (Hyperpolarization-activated
           cation channel 4) (HAC-4)
          Length = 1175

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
 Frame = -3

Query: 547 SPSNSSCRLAAHAAAVEGQCPGGGA--RSGGADHAPLHERVGLVNVVAAG---PGHGHLV 383
           S +N  CR    + A  G   GGG    +GG  H  LH+      ++A G   PG     
Sbjct: 93  SSTNGDCRRFRGSLASLGSRGGGGGGGSTGGGSHGHLHDSAEERRLIAEGDASPGEDRTP 152

Query: 382 VGLA 371
            GLA
Sbjct: 153 PGLA 156

>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (hLark)
          Length = 364

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -3

Query: 544 PSNSSCRLAAHAAAVEGQCPGGGARSGGADHAPLHERVGLVNVVAAGPGHGH 389
           P++ +   AA AAA             G D +PL      V  V  G G+GH
Sbjct: 278 PTSGAAATAAAAAAAAAAVTAASTSYYGRDRSPLRRATAPVPTVGEGYGYGH 329

>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)|
          Length = 2414

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -3

Query: 487 PGGGARSGGADHAPLHERVGLVNVVAAGPGHG 392
           PGGG  + G   AP  ++ GLV  VA G G G
Sbjct: 295 PGGGMPNMGQQPAPQVQQPGLVTPVAQGMGSG 326

>SREP_PENCH (Q92259) GATA factor SREP|
          Length = 532

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = -3

Query: 544 PSNSSCRLAAHAAAVEGQCPGGGARSG-----GADHAPLH 440
           P++S C  ++     +G CPGGG+ +G     G D  P +
Sbjct: 147 PASSHCGGSSEGGGCKGSCPGGGSCNGTGGAEGCDGCPAY 186

>HXB7_MOUSE (P09024) Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (MH-22B)|
          Length = 217

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 553 GISPSNSSCRLAAHAAAVEGQCPGGGARSGGA 458
           G+ PS+ +   A     + G CPG  A++GGA
Sbjct: 79  GLEPSSFNMHCAPFEQNLSGVCPGDAAKAGGA 110

>TCF20_HUMAN (Q9UGU0) Transcription factor 20 (Stromelysin 1 PDGF-responsive|
           element-binding protein) (SPRE-binding protein) (Nuclear
           factor SPBP) (AR1)
          Length = 1960

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
 Frame = -3

Query: 562 DEPGIS---PSNSSCRLAAHAAAVEGQCPGGGARSG--GADHAPLH--ERVGLVNVVAAG 404
           D+P  +   PSN   +  +HA+  + + PGGG   G    D+   H  E  G     AAG
Sbjct: 630 DDPAATQRPPSNGGAKETSHASLPQPEPPGGGGSKGNKNGDNNSNHNGEGNGQSGHSAAG 689

Query: 403 PG 398
           PG
Sbjct: 690 PG 691

>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a)
          Length = 362

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -3

Query: 520 AAHAAAVEGQCPGGGARSGGADHAPLHERVGLVNVVAAGPGHGH 389
           AA AAA         +   G D +PL    G V  V  G G+GH
Sbjct: 284 AAAAAAAAAAVTAASSSYYGRDRSPLRRATGPVPTVGEGYGYGH 327


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,084,763
Number of Sequences: 219361
Number of extensions: 1264558
Number of successful extensions: 5352
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5339
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)