>TRUA_DESVH (Q72DL8) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 297

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -2

Query: 395 EKTLRPPPRQLETAGNSLIRREASNQQQIRDAGRADRNVRAQIQLPRVFAP 243
           E   RP PR ++     ++ R A  Q ++  AGR D  V A  Q+  V  P
Sbjct: 22  EHATRPRPRTVQGVLEPIVSRMAGEQVRLHAAGRTDAGVHADGQVAHVDIP 72

>KLF15_MOUSE (Q9EPW2) Krueppel-like factor 15 (Cardiovascular Kruppel-like|
           factor)
          Length = 415

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = -1

Query: 282 CSCADPAPSRVCSKIAASPAHRSEGETCESDSKRLIRINHGRGPHLAQGSKRIRSGNWR 106
           CSCA P     CS  +A P   ++G   +    R    + G    +   S  +  G+WR
Sbjct: 50  CSCASPDSQAFCSCYSAGPGPEAQGSILDFLLSRATLGSGGGSGGIGDSSGPVTWGSWR 108

>RL16_MYCGE (P47404) 50S ribosomal protein L16|
          Length = 138

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 229 ACGDLG-ANTRGSWICARTFRSARPASRICC*FDASRRIRLFPAVS 363
           A G+ G   T+G+WI AR   SAR A   C        IR+FP +S
Sbjct: 28  AFGEYGIVATKGNWIDARAIESARVAISKCLGKTGKMWIRIFPHMS 73

>RL16_MYCPN (P41204) 50S ribosomal protein L16|
          Length = 139

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 229 ACGDLG-ANTRGSWICARTFRSARPASRICC*FDASRRIRLFPAVS 363
           A G+ G   T+G+WI AR   SAR A   C        IR+FP +S
Sbjct: 28  AFGEYGLVATKGNWIDARAIESARIAISKCLGKTGKMWIRIFPHMS 73

>DYRK3_DROME (P83102) Putative dual specificity|
           tyrosine-phosphorylation-regulated kinase 3 homolog (EC
           2.7.12.1)
          Length = 828

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = -2

Query: 410 PTNLPEKTLRPPPRQLETAGNSLIRREASNQQQIRDAGRADRNVRAQIQLPRVFAPRSPQ 231
           PT+LP+  ++   + L   G +    E +N+ Q RD+G           L R F    P 
Sbjct: 42  PTSLPQIQIQMINQNLTHTGIAQNNTEKANRHQYRDSGLQ--------YLTRCF---EPL 90

Query: 230 AQLTDQKE----KPASQIAN 183
           A L D KE    +P++ IAN
Sbjct: 91  AMLNDSKEDFPTQPSNNIAN 110

>VTER_HHV7J (P52462) Probable DNA packaging protein (Terminase)|
          Length = 663

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 150 EVRVHDLFESTVCYLTRRFLLLIGELGLRRSWSKHARELDL 272
           +V++   F ++  +  +RF++L  ELG   ++ +H + L L
Sbjct: 24  DVKISSTFPNSAIFCQKRFIILTPELGFTHAYCRHVKPLYL 64

>IKBL_MOUSE (O88995) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa|
           B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of
           kappa light polypeptide gene enhancer in B-cells
           inhibitor-like 1)
          Length = 381

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = -1

Query: 225 AHRSEGETCESDSKRLIRINHGRGPHLAQGSKRIRSGNWRPGGWIYRFGSVDEAC 61
           A   E E CES ++R       +GP   +   R         G ++RFG V   C
Sbjct: 250 ARAKEKELCESRARRAQEAQRDKGPEPPRAGPRAEHPRGAERGSLWRFGDVPWPC 304

>DVL1_HUMAN (O14640) Segment polarity protein dishevelled homolog DVL-1|
           (Dishevelled-1) (DSH homolog 1)
          Length = 670

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = -3

Query: 418 DEIPRTCRRKLFARRRASSRPPGTA*SVVKHQISNRSETPAEQIGMFVRRSSSLACLLQD 239
           +E PRT       RRR    PP +A + +  ++ + S   +++ G   R SSS       
Sbjct: 154 EEAPRTNGHPRGDRRRDVGLPPDSASTALSSELESSSFVDSDEDGSTSRLSSSTEQSTSS 213

Query: 238 RRKPSSPIRRRNLRVR 191
           R       RRR  R+R
Sbjct: 214 RLIRKHKRRRRKQRLR 229

>TFE2_MOUSE (P15806) Transcription factor E2-alpha (Immunoglobulin|
           enhancer-binding factor E12/E47) (Transcription factor
           3) (TCF-3) (Transcription factor A1)
          Length = 651

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
 Frame = -2

Query: 410 PTNLPEKTLRPPP------RQLETAGNSLIRREASNQQQIRDAGRADRNVRAQIQLPR 255
           P++LP+ + RPP       R   TAG S I+RE    ++I     A+ + +  +++PR
Sbjct: 466 PSSLPDLSQRPPDSYSGLGRAGTTAGASEIKREEKEDEEIASVADAEED-KKDLKVPR 522

>DEF2_PROMM (Q7V5F9) Peptide deformylase 2 (EC 3.5.1.88) (PDF 2) (Polypeptide|
           deformylase 2)
          Length = 201

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 401 LPEKTLRPPPRQLETAGNSLIRREASNQQQIRDAGRADRNVR 276
           +P++ L  PP Q+ T GN ++R      Q  R  G+ D +VR
Sbjct: 21  VPKEPLDHPPLQIHTLGNGVLR------QSTRRIGKVDESVR 56

>PHOT2_ARATH (P93025) Phototropin-2 (EC 2.7.11.1) (Defective in chloroplast|
           avoidance protein 1) (Non phototropic hypocotyl 1-like
           protein 1) (NPH1-like 1) (AtKin7)
          Length = 915

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +3

Query: 63  TPRPRTQTCRSSLLASSFRIES-ASIPGQGEVRVHDLFESTVCYLTRRFLLLIGE-LGLR 236
           TP P  QT +S   + SFR     S P   +++  +     +  +    L+L  E +G R
Sbjct: 303 TPTPGRQTRQSDEASKSFRTPGRVSTPTGSKLKSSNNRHEDLLRMEPEELMLSTEVIGQR 362

Query: 237 RSWSKHARELDLRTNIPICS 296
            SW    RE D+R  I + +
Sbjct: 363 DSWDLSDRERDIRQGIDLAT 382

>HOW_DROME (O01367) Protein held out wings (KH-domain protein KH93F) (Putative|
           RNA-binding protein) (Protein muscle-specific) (Protein
           wings held out) (Protein struthio) (Quaking-related 93F)
          Length = 405

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 326 SNQQQIRDAGRADRNVRAQIQLPRVFAPRSPQAQLTDQKEKPASQ 192
           + QQQ +   +A    + Q Q P+V  P +PQ  LT Q+++ ++Q
Sbjct: 30  AQQQQAQAQAQAQAQAQQQQQAPQVVVPMTPQ-HLTPQQQQQSTQ 73

>TOPRS_MOUSE (Q80Z37) Ubiquitin-protein E3 ligase Topors (EC 6.3.2.-)|
           (SUMO1-protein E3 ligase Topors) (Topoisomerase
           I-binding RING finger protein) (Topoisomerase I-binding
           arginine/serine-rich protein) (Tumor suppressor
           p53-binding protein 3) (p53-bindi
          Length = 1033

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -1

Query: 255 RVCSKIAASPAHRSEGETCESDSKRLIRINHGRGPHLAQGSKRIRS 118
           RVCS    +  HR  G +  SDS+   R  H    H   G KR+R+
Sbjct: 582 RVCSPY--NHRHRKGGRSRSSDSRSQSRSGHDPRNHRKHGKKRLRN 625


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,860,183
Number of Sequences: 219361
Number of extensions: 1754605
Number of successful extensions: 5492
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5486
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)