>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                                   
Query: 446     ttgtattgataattattcgatgatatttcgataattattagatctaagagat 497
               |||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 6723108 ttgtattgataattattcgatgaactttcgataattattagatctaagagat 6723159



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/36 (94%), Gaps = 2/36 (5%)
 Strand = Plus / Plus

                                                   
Query: 510     aaggtaagag--catgtaacaagcgaggtgcttgtg 543
               ||||||||||  ||||||||||||||||||||||||
Sbjct: 6723197 aaggtaagagaacatgtaacaagcgaggtgcttgtg 6723232

>gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1626B05,
              complete sequence
          Length = 127946

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                                  
Query: 446    ttgtattgataattattcgatgatatttcgataattattagatctaagagat 497
              |||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 108656 ttgtattgataattattcgatgaactttcgataattattagatctaagagat 108707



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/36 (94%), Gaps = 2/36 (5%)
 Strand = Plus / Plus

                                                  
Query: 510    aaggtaagag--catgtaacaagcgaggtgcttgtg 543
              ||||||||||  ||||||||||||||||||||||||
Sbjct: 108745 aaggtaagagaacatgtaacaagcgaggtgcttgtg 108780

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                                   
Query: 446     ttgtattgataattattcgatgatatttcgataattattagatctaagagat 497
               |||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 6722321 ttgtattgataattattcgatgaactttcgataattattagatctaagagat 6722372



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/36 (94%), Gaps = 2/36 (5%)
 Strand = Plus / Plus

                                                   
Query: 510     aaggtaagag--catgtaacaagcgaggtgcttgtg 543
               ||||||||||  ||||||||||||||||||||||||
Sbjct: 6722410 aaggtaagagaacatgtaacaagcgaggtgcttgtg 6722445

>dbj|AK103846.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148J22, full
           insert sequence
          Length = 2465

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                               
Query: 446 ttgtattgataattattcgatgatatttcgataattattagatctaagagat 497
           |||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 429 ttgtattgataattattcgatgaactttcgataattattagatctaagagat 480



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/36 (94%), Gaps = 2/36 (5%)
 Strand = Plus / Plus

                                               
Query: 510 aaggtaagag--catgtaacaagcgaggtgcttgtg 543
           ||||||||||  ||||||||||||||||||||||||
Sbjct: 518 aaggtaagagaacatgtaacaagcgaggtgcttgtg 553

>dbj|AK063571.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-G06, full
           insert sequence
          Length = 585

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                               
Query: 446 ttgtattgataattattcgatgatatttcgataattattagatctaagagat 497
           |||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 435 ttgtattgataattattcgatgaactttcgataattattagatctaagagat 486



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/36 (94%), Gaps = 2/36 (5%)
 Strand = Plus / Plus

                                               
Query: 510 aaggtaagag--catgtaacaagcgaggtgcttgtg 543
           ||||||||||  ||||||||||||||||||||||||
Sbjct: 524 aaggtaagagaacatgtaacaagcgaggtgcttgtg 559

>dbj|AK061960.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-G02, full
           insert sequence
          Length = 1385

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                               
Query: 446 ttgtattgataattattcgatgatatttcgataattattagatctaagagat 497
           |||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 435 ttgtattgataattattcgatgaactttcgataattattagatctaagagat 486



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/36 (94%), Gaps = 2/36 (5%)
 Strand = Plus / Plus

                                               
Query: 510 aaggtaagag--catgtaacaagcgaggtgcttgtg 543
           ||||||||||  ||||||||||||||||||||||||
Sbjct: 524 aaggtaagagaacatgtaacaagcgaggtgcttgtg 559

>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16
          Length = 349640

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 354    ggcggtctcgagctggcgcggcggcg 379
              ||||||||||||| ||||||||||||
Sbjct: 139650 ggcggtctcgagcgggcgcggcggcg 139675

>gb|U80955.3| Caenorhabditis elegans cosmid T04C9, complete sequence
          Length = 34791

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 461   ttcgatgatatttcgataatt 481
             |||||||||||||||||||||
Sbjct: 23712 ttcgatgatatttcgataatt 23692

>emb|CT009748.6| Mouse DNA sequence from clone RP23-120N6 on chromosome 9, complete
             sequence
          Length = 235839

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 89    tagatccagcctcctggcctccagt 113
             |||||||||||| ||||||||||||
Sbjct: 79180 tagatccagcctgctggcctccagt 79204

>gb|AC107635.16| Mus musculus chromosome 9, clone RP23-24C14, complete sequence
          Length = 214285

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 89    tagatccagcctcctggcctccagt 113
             |||||||||||| ||||||||||||
Sbjct: 16028 tagatccagcctgctggcctccagt 16004

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 362     cgagctggcgcggcggcgggc 382
               |||||||||||||||||||||
Sbjct: 1105598 cgagctggcgcggcggcgggc 1105618

>ref|XM_450520.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1590

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 286 cgatctgctcggccggcgtc 305
           ||||||||||||||||||||
Sbjct: 59  cgatctgctcggccggcgtc 78

>emb|CR933475.1| Paramecium tetraurelia, Small GTPase ras, putative, complete gene
          Length = 3001

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 476  ataattattagatctaagag 495
            ||||||||||||||||||||
Sbjct: 2073 ataattattagatctaagag 2054

>ref|XM_759868.1| Theileria parva strain Muguga hypothetical protein (TP02_0395)
           partial mRNA
          Length = 1401

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 476 ataattattagatctaagag 495
           ||||||||||||||||||||
Sbjct: 235 ataattattagatctaagag 254

>gb|AC159466.3| Mus musculus 10 BAC RP23-388A21 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 190140

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 311   tctgttgctgatttgatgct 330
             ||||||||||||||||||||
Sbjct: 56500 tctgttgctgatttgatgct 56519

>emb|AL450344.4| Human DNA sequence from clone RP11-136K14 on chromosome 6 Contains
             three novel genes, the 5' end of a novel gene (contains
             FLJ31738 and KIAA1209) and a CpG island, complete sequence
          Length = 150005

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 533   aggtgcttgtggtgagggga 552
             ||||||||||||||||||||
Sbjct: 64409 aggtgcttgtggtgagggga 64390

>emb|AL137073.13| Human DNA sequence from clone RP11-404F11 on chromosome 9p23-24.1
              Contains a novel gene encoding a protein similar to
              bacterial N-acetylneuraminic acid condensing enzyme (NEUB)
              and 3' end of the TBCID2 gene, a TRIM14 gene encoding
              tripartite motif-containing 14 (KIAA0129), the CORO2A gene
              encoding Coronin 2A (actin-binding protein), TBC1D2 gene
              encoding TBC1 domain family, member 2 (PARIS1,
              PARIS-1,DKFZP761D1823, DKFZp761D1823), and 4 CpG islands,
              complete sequence
          Length = 201300

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    gatccctgggcaaggtgagg 153
              ||||||||||||||||||||
Sbjct: 160784 gatccctgggcaaggtgagg 160765

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 286     cgatctgctcggccggcgtc 305
               ||||||||||||||||||||
Sbjct: 9446111 cgatctgctcggccggcgtc 9446130



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 120     atcgaatccgcttcgatccc 139
               ||||||||||||||||||||
Sbjct: 4713500 atcgaatccgcttcgatccc 4713519

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 120      atcgaatccgcttcgatccc 139
                ||||||||||||||||||||
Sbjct: 18437712 atcgaatccgcttcgatccc 18437731

>gb|AC153568.5| Mus musculus 10 BAC RP23-66K22 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 186215

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 311    tctgttgctgatttgatgct 330
              ||||||||||||||||||||
Sbjct: 169521 tctgttgctgatttgatgct 169540

>dbj|AP006446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1097H10
          Length = 159732

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   atcgaatccgcttcgatccc 139
             ||||||||||||||||||||
Sbjct: 31104 atcgaatccgcttcgatccc 31123

>dbj|AP005593.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
            clone:P0692F07
          Length = 141544

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 286  cgatctgctcggccggcgtc 305
            ||||||||||||||||||||
Sbjct: 9747 cgatctgctcggccggcgtc 9766

>dbj|AP004861.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0001A11
          Length = 153252

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    atcgaatccgcttcgatccc 139
              ||||||||||||||||||||
Sbjct: 100636 atcgaatccgcttcgatccc 100655

>dbj|AK109621.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-A06, full
           insert sequence
          Length = 1590

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 286 cgatctgctcggccggcgtc 305
           ||||||||||||||||||||
Sbjct: 59  cgatctgctcggccggcgtc 78


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,678,220
Number of Sequences: 3902068
Number of extensions: 3678220
Number of successful extensions: 68176
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67678
Number of HSP's gapped (non-prelim): 498
length of query: 579
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 556
effective length of database: 17,143,297,704
effective search space: 9531673523424
effective search space used: 9531673523424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)