ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63e18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 1164 bits (587), Expect = 0.0 Identities = 587/587 (100%) Strand = Plus / Plus Query: 31 atcagctccatccatcactgacgatcgatctcagtccacctgcatctgtaggtgtactag 90 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2 atcagctccatccatcactgacgatcgatctcagtccacctgcatctgtaggtgtactag 61 Query: 91 tagtacgccggcctaatccagctgagagctgatcgagctagcttgcatataccactgcac 150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62 tagtacgccggcctaatccagctgagagctgatcgagctagcttgcatataccactgcac 121 Query: 151 gtacgcacatcaaattaattagaaactactgtaattaagttatcagcagcgagaagagaa 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 gtacgcacatcaaattaattagaaactactgtaattaagttatcagcagcgagaagagaa 181 Query: 211 cgatcgatcaacaccatggcttctgctttctcgtccaccgttggagctccggcgtcgacc 270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182 cgatcgatcaacaccatggcttctgctttctcgtccaccgttggagctccggcgtcgacc 241 Query: 271 ccgaccatcttcctgggcaagaaggtgaagaactactaccatggtggcaacaagatgaag 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 ccgaccatcttcctgggcaagaaggtgaagaactactaccatggtggcaacaagatgaag 301 Query: 331 agcagggtggtgagggtcatggcggccaaaaaggaacttgaccagggcaagcagaccgat 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 302 agcagggtggtgagggtcatggcggccaaaaaggaacttgaccagggcaagcagaccgat 361 Query: 391 gcggaccggtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgg 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 362 gcggaccggtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgg 421 Query: 451 gggaaaggcatcgtggactccctgttccaggcccccatgggcgacggcacccacgaggcc 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 422 gggaaaggcatcgtggactccctgttccaggcccccatgggcgacggcacccacgaggcc 481 Query: 511 atcctaagctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacacc 570 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 482 atcctaagctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacacc 541 Query: 571 atggacgggctgtacatcgcgccggcattcatggacaagctcatcgt 617 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 542 atggacgggctgtacatcgcgccggcattcatggacaagctcatcgt 588
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 708 bits (357), Expect = 0.0 Identities = 357/357 (100%) Strand = Plus / Plus Query: 261 ggcgtcgaccccgaccatcttcctgggcaagaaggtgaagaactactaccatggtggcaa 320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2801 ggcgtcgaccccgaccatcttcctgggcaagaaggtgaagaactactaccatggtggcaa 2860 Query: 321 caagatgaagagcagggtggtgagggtcatggcggccaaaaaggaacttgaccagggcaa 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2861 caagatgaagagcagggtggtgagggtcatggcggccaaaaaggaacttgaccagggcaa 2920 Query: 381 gcagaccgatgcggaccggtggaagggtctggcctacgacatctcggacgaccagcagga 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2921 gcagaccgatgcggaccggtggaagggtctggcctacgacatctcggacgaccagcagga 2980 Query: 441 catcactcgggggaaaggcatcgtggactccctgttccaggcccccatgggcgacggcac 500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2981 catcactcgggggaaaggcatcgtggactccctgttccaggcccccatgggcgacggcac 3040 Query: 501 ccacgaggccatcctaagctcctacgagtacatcagccagggcctgcggaagtacgactt 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3041 ccacgaggccatcctaagctcctacgagtacatcagccagggcctgcggaagtacgactt 3100 Query: 561 cgacaacaccatggacgggctgtacatcgcgccggcattcatggacaagctcatcgt 617 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3101 cgacaacaccatggacgggctgtacatcgcgccggcattcatggacaagctcatcgt 3157 Score = 492 bits (248), Expect = e-136 Identities = 262/264 (99%), Gaps = 2/264 (0%) Strand = Plus / Plus Query: 1 tgctaacc-ctgcacccctctcttttatcc-tatcagctccatccatcactgacgatcga 58 |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 317 tgctaaccactgcacccctctcttttatccatatcagctccatccatcactgacgatcga 376 Query: 59 tctcagtccacctgcatctgtaggtgtactagtagtacgccggcctaatccagctgagag 118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 377 tctcagtccacctgcatctgtaggtgtactagtagtacgccggcctaatccagctgagag 436 Query: 119 ctgatcgagctagcttgcatataccactgcacgtacgcacatcaaattaattagaaacta 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 437 ctgatcgagctagcttgcatataccactgcacgtacgcacatcaaattaattagaaacta 496 Query: 179 ctgtaattaagttatcagcagcgagaagagaacgatcgatcaacaccatggcttctgctt 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 497 ctgtaattaagttatcagcagcgagaagagaacgatcgatcaacaccatggcttctgctt 556 Query: 239 tctcgtccaccgttggagctccgg 262 |||||||||||||||||||||||| Sbjct: 557 tctcgtccaccgttggagctccgg 580 Score = 224 bits (113), Expect = 3e-55 Identities = 188/213 (88%) Strand = Plus / Plus Query: 399 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 458 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 5662 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 5721 Query: 459 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 518 |||||||||||| || |||||||| |||| ||| ||||||||||||||||| |||| || Sbjct: 5722 catcgtggactcgctcttccaggcgcccacggggcacggcacccacgaggccgtcctcag 5781 Query: 519 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 578 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 5782 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 5841 Query: 579 gctgtacatcgcgccggcattcatggacaagct 611 | |||||||| || || |||||||||||||| Sbjct: 5842 cttctacatcgctcctgctttcatggacaagct 5874
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 480 bits (242), Expect = e-132 Identities = 299/318 (94%) Strand = Plus / Plus Query: 300 gaactactaccatggtggcaacaagatgaagagcagggtggtgagggtcatggcggccaa 359 ||||||||||||||||||||||||||| || | |||||||| |||| |||||||||||| Sbjct: 118 gaactactaccatggtggcaacaagatcaacaatagggtggtcagggccatggcggccaa 177 Query: 360 aaaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacga 419 ||||||||||||| ||||||||||||||||||| || |||||||||||||| || ||||| Sbjct: 178 aaaggaacttgacgagggcaagcagaccgatgccgatcggtggaagggtctcgcttacga 237 Query: 420 catctcggacgaccagcaggacatcactcgggggaaaggcatcgtggactccctgttcca 479 |||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 238 catctccgatgaccagcaggacatcacgagggggaaaggcatcgtggactccctgttcca 297 Query: 480 ggcccccatgggcgacggcacccacgaggccatcctaagctcctacgagtacatcagcca 539 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 298 ggcccccatgggcgacggcacccacgaggccatcctgagctcctacgagtacatcagcca 357 Query: 540 gggcctgcggaagtacgacttcgacaacaccatggacgggctgtacatcgcgccggcatt 599 ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct: 358 gggcctgcgcaagtacgacttcgacaacaccatggacgggctgtacatcgccccggcgtt 417 Query: 600 catggacaagctcatcgt 617 |||||||||||||||||| Sbjct: 418 catggacaagctcatcgt 435 Score = 131 bits (66), Expect = 3e-27 Identities = 78/82 (95%) Strand = Plus / Plus Query: 221 acaccatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatct 280 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 21 acacgatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccacct 80 Query: 281 tcctgggcaagaaggtgaagaa 302 |||| || |||||||||||||| Sbjct: 81 tcctcgggaagaaggtgaagaa 102
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 244 bits (123), Expect = 3e-61 Identities = 210/239 (87%) Strand = Plus / Plus Query: 374 agggcaagcagaccgatgcggaccggtggaagggtctggcctacgacatctcggacgacc 433 |||||||||||||||| | |||| ||||||||| || |||||||| ||||| ||||||| Sbjct: 237 agggcaagcagaccgacggggacaagtggaagggcctcgcctacgatatctccgacgacc 296 Query: 434 agcaggacatcactcgggggaaaggcatcgtggactccctgttccaggcccccatgggcg 493 ||||||||||||| |||| || || ||||| ||||||||||||||||| |||||||||| Sbjct: 297 agcaggacatcaccaggggtaagggtatcgtcgactccctgttccaggcgcccatgggcg 356 Query: 494 acggcacccacgaggccatcctaagctcctacgagtacatcagccagggcctgcggaagt 553 | ||||||||||||||| |||| ||||||||||||||| ||||||||||||| ||||| Sbjct: 357 atggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctcaagaagt 416 Query: 554 acgacttcgacaacaccatggacgggctgtacatcgcgccggcattcatggacaagctc 612 ||||||||||||||||||||| || | |||||||| ||||| ||||||||||||||| Sbjct: 417 acgacttcgacaacaccatgggaggcttctacatcgccccggctttcatggacaagctc 475 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 226 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 285 |||||| |||| ||||| |||||||| ||||||||||| || || ||||||| |||||| Sbjct: 80 atggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagcttcctc 139 Query: 286 ggcaa 290 ||||| Sbjct: 140 ggcaa 144
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 224 bits (113), Expect = 3e-55 Identities = 207/239 (86%) Strand = Plus / Plus Query: 374 agggcaagcagaccgatgcggaccggtggaagggtctggcctacgacatctcggacgacc 433 |||||||||||||||| | |||| ||||||||| || |||||||| ||||| ||||||| Sbjct: 227 agggcaagcagaccgacggggacaagtggaagggcctcgcctacgatatctccgacgacc 286 Query: 434 agcaggacatcactcgggggaaaggcatcgtggactccctgttccaggcccccatgggcg 493 ||||||||||||| |||| || || ||||| |||||| |||||||||| |||||||||| Sbjct: 287 agcaggacatcaccaggggtaagggtatcgtcgactccttgttccaggcgcccatgggcg 346 Query: 494 acggcacccacgaggccatcctaagctcctacgagtacatcagccagggcctgcggaagt 553 | || |||||||||||| |||| ||||| ||||||||| ||||||||||||| ||||| Sbjct: 347 atggnacccacgaggccgtcctcagctcntacgagtacgtcagccagggcctcaagaagt 406 Query: 554 acgacttcgacaacaccatggacgggctgtacatcgcgccggcattcatggacaagctc 612 ||||||||||||||||||||| || | |||||||| ||||| ||||||||||||||| Sbjct: 407 acgacttcgacaacaccatgggaggcttctacatcgccccggctttcatggacaagctc 465 Score = 52.0 bits (26), Expect = 0.002 Identities = 55/65 (84%) Strand = Plus / Plus Query: 226 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 285 |||||| |||| ||||| |||||||| ||||||||||| || || || |||| |||||| Sbjct: 70 atggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagcttcctc 129 Query: 286 ggcaa 290 ||||| Sbjct: 130 ggcaa 134
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 224 bits (113), Expect = 3e-55 Identities = 188/213 (88%) Strand = Plus / Plus Query: 399 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 458 |||||||||||| || ||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 321 gtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagagggaaggg 380 Query: 459 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 518 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 381 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 440 Query: 519 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 578 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 441 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 500 Query: 579 gctgtacatcgcgccggcattcatggacaagct 611 | |||||||| || || |||||||||||||| Sbjct: 501 cttctacatcgctcctgctttcatggacaagct 533
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 224 bits (113), Expect = 3e-55 Identities = 188/213 (88%) Strand = Plus / Plus Query: 399 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 458 |||||||||||| || ||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 66 gtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagagggaaggg 125 Query: 459 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 518 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 126 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 185 Query: 519 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 578 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 186 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 245 Query: 579 gctgtacatcgcgccggcattcatggacaagct 611 | |||||||| || || |||||||||||||| Sbjct: 246 cttctacatcgctcctgctttcatggacaagct 278
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 208 bits (105), Expect = 2e-50 Identities = 219/257 (85%) Strand = Plus / Plus Query: 361 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 420 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 171 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 230 Query: 421 atctcggacgaccagcaggacatcactcgggggaaaggcatcgtggactccctgttccag 480 ||||| || ||||||||||||||||| ||||||| || |||| |||||||| |||||| Sbjct: 231 atctccgatgaccagcaggacatcaccagggggaagggtttcgtcgactcccttttccag 290 Query: 481 gcccccatgggcgacggcacccacgaggccatcctaagctcctacgagtacatcagccag 540 || |||| ||| || ||||||||||||||| |||| ||||||||||||||| |||||||| Sbjct: 291 gctcccacgggtgatggcacccacgaggccgtcctcagctcctacgagtacctcagccag 350 Query: 541 ggcctgcggaagtacgacttcgacaacaccatggacgggctgtacatcgcgccggcattc 600 || || | | ||||||||||||||||||||||| || | |||||||| || || ||| Sbjct: 351 ggtctcagaacgtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttc 410 Query: 601 atggacaagctcatcgt 617 |||||||||||| |||| Sbjct: 411 atggacaagctcgtcgt 427 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Plus Query: 226 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 285 |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| ||||||| Sbjct: 27 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 86 Query: 286 ggcaagaaggtgaagaa 302 || |||||| ||||||| Sbjct: 87 gggaagaagctgaagaa 103
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 208 bits (105), Expect = 2e-50 Identities = 219/257 (85%) Strand = Plus / Plus Query: 361 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 420 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 219 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 278 Query: 421 atctcggacgaccagcaggacatcactcgggggaaaggcatcgtggactccctgttccag 480 ||||| || ||||||||||||||||| ||||||| || |||| |||||||| |||||| Sbjct: 279 atctccgatgaccagcaggacatcaccagggggaagggtttcgtcgactcccttttccag 338 Query: 481 gcccccatgggcgacggcacccacgaggccatcctaagctcctacgagtacatcagccag 540 || |||| ||| || ||||||||||||||| |||| ||||||||||||||| |||||||| Sbjct: 339 gctcccacgggtgatggcacccacgaggccgtcctcagctcctacgagtacctcagccag 398 Query: 541 ggcctgcggaagtacgacttcgacaacaccatggacgggctgtacatcgcgccggcattc 600 || || | | ||||||||||||||||||||||| || | |||||||| || || ||| Sbjct: 399 ggtctcagaacgtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttc 458 Query: 601 atggacaagctcatcgt 617 |||||||||||| |||| Sbjct: 459 atggacaagctcgtcgt 475 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Plus Query: 226 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 285 |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| ||||||| Sbjct: 75 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 134 Query: 286 ggcaagaaggtgaagaa 302 || |||||| ||||||| Sbjct: 135 gggaagaagctgaagaa 151
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 208 bits (105), Expect = 2e-50 Identities = 219/257 (85%) Strand = Plus / Plus Query: 361 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 420 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 208 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 267 Query: 421 atctcggacgaccagcaggacatcactcgggggaaaggcatcgtggactccctgttccag 480 ||||| || ||||||||||||||||| ||||||| || |||| |||||||| |||||| Sbjct: 268 atctccgatgaccagcaggacatcaccagggggaagggtttcgtcgactcccttttccag 327 Query: 481 gcccccatgggcgacggcacccacgaggccatcctaagctcctacgagtacatcagccag 540 || |||| ||| || ||||||||||||||| |||| ||||||||||||||| |||||||| Sbjct: 328 gctcccacgggtgatggcacccacgaggccgtcctcagctcctacgagtacctcagccag 387 Query: 541 ggcctgcggaagtacgacttcgacaacaccatggacgggctgtacatcgcgccggcattc 600 || || | | ||||||||||||||||||||||| || | |||||||| || || ||| Sbjct: 388 ggtctcagaacgtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttc 447 Query: 601 atggacaagctcatcgt 617 |||||||||||| |||| Sbjct: 448 atggacaagctcgtcgt 464 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Plus Query: 226 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 285 |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| ||||||| Sbjct: 64 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 123 Query: 286 ggcaagaaggtgaagaa 302 || |||||| ||||||| Sbjct: 124 gggaagaagctgaagaa 140
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 208 bits (105), Expect = 2e-50 Identities = 219/257 (85%) Strand = Plus / Plus Query: 361 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 420 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 207 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 266 Query: 421 atctcggacgaccagcaggacatcactcgggggaaaggcatcgtggactccctgttccag 480 ||||| || ||||||||||||||||| ||||||| || |||| |||||||| |||||| Sbjct: 267 atctccgatgaccagcaggacatcaccagggggaagggtttcgtcgactcccttttccag 326 Query: 481 gcccccatgggcgacggcacccacgaggccatcctaagctcctacgagtacatcagccag 540 || |||| ||| || ||||||||||||||| |||| ||||||||||||||| |||||||| Sbjct: 327 gctcccacgggtgatggcacccacgaggccgtcctcagctcctacgagtacctcagccag 386 Query: 541 ggcctgcggaagtacgacttcgacaacaccatggacgggctgtacatcgcgccggcattc 600 || || | | ||||||||||||||||||||||| || | |||||||| || || ||| Sbjct: 387 ggtctcagaacgtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttc 446 Query: 601 atggacaagctcatcgt 617 |||||||||||| |||| Sbjct: 447 atggacaagctcgtcgt 463 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Plus Query: 226 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 285 |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| ||||||| Sbjct: 63 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 122 Query: 286 ggcaagaaggtgaagaa 302 || |||||| ||||||| Sbjct: 123 gggaagaagctgaagaa 139
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 208 bits (105), Expect = 2e-50 Identities = 219/257 (85%) Strand = Plus / Plus Query: 361 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 420 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 212 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 271 Query: 421 atctcggacgaccagcaggacatcactcgggggaaaggcatcgtggactccctgttccag 480 ||||| || ||||||||||||||||| ||||||| || |||| |||||||| |||||| Sbjct: 272 atctccgatgaccagcaggacatcaccagggggaagggtttcgtcgactcccttttccag 331 Query: 481 gcccccatgggcgacggcacccacgaggccatcctaagctcctacgagtacatcagccag 540 || |||| ||| || ||||||||||||||| |||| ||||||||||||||| |||||||| Sbjct: 332 gctcccacgggtgatggcacccacgaggccgtcctcagctcctacgagtacctcagccag 391 Query: 541 ggcctgcggaagtacgacttcgacaacaccatggacgggctgtacatcgcgccggcattc 600 || || | | ||||||||||||||||||||||| || | |||||||| || || ||| Sbjct: 392 ggtctcagaacgtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttc 451 Query: 601 atggacaagctcatcgt 617 |||||||||||| |||| Sbjct: 452 atggacaagctcgtcgt 468 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 226 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 285 |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| ||||||| Sbjct: 68 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 127 Query: 286 ggcaagaaggtgaa 299 || |||||| |||| Sbjct: 128 gggaagaagctgaa 141
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 208 bits (105), Expect = 2e-50 Identities = 219/257 (85%) Strand = Plus / Plus Query: 361 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 420 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 206 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 265 Query: 421 atctcggacgaccagcaggacatcactcgggggaaaggcatcgtggactccctgttccag 480 ||||| || ||||||||||||||||| ||||||| || |||| |||||||| |||||| Sbjct: 266 atctccgatgaccagcaggacatcaccagggggaagggtttcgtcgactcccttttccag 325 Query: 481 gcccccatgggcgacggcacccacgaggccatcctaagctcctacgagtacatcagccag 540 || |||| ||| || ||||||||||||||| |||| ||||||||||||||| |||||||| Sbjct: 326 gctcccacgggtgatggcacccacgaggccgtcctcagctcctacgagtacctcagccag 385 Query: 541 ggcctgcggaagtacgacttcgacaacaccatggacgggctgtacatcgcgccggcattc 600 || || | | ||||||||||||||||||||||| || | |||||||| || || ||| Sbjct: 386 ggtctcagaacgtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttc 445 Query: 601 atggacaagctcatcgt 617 |||||||||||| |||| Sbjct: 446 atggacaagctcgtcgt 462 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Plus Query: 226 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 285 |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| ||||||| Sbjct: 62 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 121 Query: 286 ggcaagaaggtgaagaa 302 || |||||| ||||||| Sbjct: 122 gggaagaagctgaagaa 138
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 206 bits (104), Expect = 6e-50 Identities = 209/244 (85%) Strand = Plus / Plus Query: 374 agggcaagcagaccgatgcggaccggtggaagggtctggcctacgacatctcggacgacc 433 |||||||||||||||| |||| ||||||||||||| |||||||||||||| || |||| Sbjct: 4 agggcaagcagaccgaccaggacaggtggaagggtctcgcctacgacatctccgatgacc 63 Query: 434 agcaggacatcactcgggggaaaggcatcgtggactccctgttccaggcccccatgggcg 493 ||||||||||||| ||||||| || |||| |||||||| |||||||| |||| ||| | Sbjct: 64 agcaggacatcaccagggggaagggtttcgtcgactcccttttccaggctcccacgggtg 123 Query: 494 acggcacccacgaggccatcctaagctcctacgagtacatcagccagggcctgcggaagt 553 | ||||||||||||||| |||| ||||||||||||||| |||||||||| || | | || Sbjct: 124 atggcacccacgaggccgtcctcagctcctacgagtacctcagccagggtctcagaacgt 183 Query: 554 acgacttcgacaacaccatggacgggctgtacatcgcgccggcattcatggacaagctca 613 ||||||||||||||||||||| || | |||||||| || || ||||||||||||||| Sbjct: 184 acgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagctcg 243 Query: 614 tcgt 617 |||| Sbjct: 244 tcgt 247
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 200 bits (101), Expect = 4e-48 Identities = 218/257 (84%) Strand = Plus / Plus Query: 361 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 420 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 179 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 238 Query: 421 atctcggacgaccagcaggacatcactcgggggaaaggcatcgtggactccctgttccag 480 ||||| || ||||||||||||||||| ||||||| || |||| |||||||| |||||| Sbjct: 239 atctccgatgaccagcaggacatcaccagggggaagggtttcgtcgactcccttttccag 298 Query: 481 gcccccatgggcgacggcacccacgaggccatcctaagctcctacgagtacatcagccag 540 || |||| ||| || ||||||||||||||| |||| ||||||||||||||| |||||||| Sbjct: 299 gctcccacgggtgatggcacccacgaggccgtcctcagctcctacgagtacctcagccag 358 Query: 541 ggcctgcggaagtacgacttcgacaacaccatggacgggctgtacatcgcgccggcattc 600 || || | | ||||||||||||||||||||||| || | |||||||| || | ||| Sbjct: 359 ggtctcagaacgtacgacttcgacaacaccatgggaggcttctacatcgccccttctttc 418 Query: 601 atggacaagctcatcgt 617 |||||||||||| |||| Sbjct: 419 atggacaagctcgtcgt 435 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Plus Query: 226 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 285 |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| ||||||| Sbjct: 35 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 94 Query: 286 ggcaagaaggtgaagaa 302 || |||||| ||||||| Sbjct: 95 gggaagaagctgaagaa 111
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 200 bits (101), Expect = 4e-48 Identities = 185/213 (86%) Strand = Plus / Plus Query: 399 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 458 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 241 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 300 Query: 459 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 518 ||||||||||||||| |||||||| |||| ||||||||||||||||||||| |||| || Sbjct: 301 catcgtggactccctcttccaggcgcccactggcgacggcacccacgaggccgtcctcag 360 Query: 519 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 578 ||| ||||||||| |||||||||| || |||||||||||||||||||||||||| || Sbjct: 361 ctcatacgagtacgtcagccagggactcaagaagtacgacttcgacaacaccatgggagg 420 Query: 579 gctgtacatcgcgccggcattcatggacaagct 611 | |||||||| || || |||||||||||||| Sbjct: 421 cttctacatcgctcctgctttcatggacaagct 453
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 170 bits (86), Expect = 3e-39 Identities = 158/182 (86%) Strand = Plus / Minus Query: 361 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 420 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 109739 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 109680 Query: 421 atctcggacgaccagcaggacatcactcgggggaaaggcatcgtggactccctgttccag 480 ||||| || ||||||||||||||||| ||||||| || |||| |||||||| |||||| Sbjct: 109679 atctccgatgaccagcaggacatcaccagggggaagggtttcgtcgactcccttttccag 109620 Query: 481 gcccccatgggcgacggcacccacgaggccatcctaagctcctacgagtacatcagccag 540 || |||| ||| || ||||||||||||||| |||| ||||||||||||||| |||||||| Sbjct: 109619 gctcccacgggtgatggcacccacgaggccgtcctcagctcctacgagtacctcagccag 109560 Query: 541 gg 542 || Sbjct: 109559 gg 109558 Score = 129 bits (65), Expect = 1e-26 Identities = 101/113 (89%) Strand = Plus / Minus Query: 397 cggtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaa 456 ||||||||||| || || ||||||||||| |||||||||||||||||||| ||||||| Sbjct: 113207 cggtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaag 113148 Query: 457 ggcatcgtggactccctgttccaggcccccatgggcgacggcacccacgaggc 509 ||| |||| ||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 113147 ggcctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 552 gtacgacttcgacaacaccatggacgggctgtacatcgcgccggcattcatggacaagct 611 ||||||||||||||||||||||| || | |||||||| || || |||||||||||||| Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 109376 Query: 612 catcgt 617 | |||| Sbjct: 109375 cgtcgt 109370 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 226 atggcttctgctttctcgtccaccgttggagctccgg 262 |||||| |||| ||||| ||||||||||||||||||| Sbjct: 109982 atggctgctgccttctcctccaccgttggagctccgg 109946 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 226 atggcttctgctttctcgtccaccgttggagctccgg 262 ||||||||||||||||| ||||| || ||||| |||| Sbjct: 113920 atggcttctgctttctcctccactgtcggagccccgg 113884
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 170 bits (86), Expect = 3e-39 Identities = 158/182 (86%) Strand = Plus / Minus Query: 361 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 420 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 31616 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 31557 Query: 421 atctcggacgaccagcaggacatcactcgggggaaaggcatcgtggactccctgttccag 480 ||||| || ||||||||||||||||| ||||||| || |||| |||||||| |||||| Sbjct: 31556 atctccgatgaccagcaggacatcaccagggggaagggtttcgtcgactcccttttccag 31497 Query: 481 gcccccatgggcgacggcacccacgaggccatcctaagctcctacgagtacatcagccag 540 || |||| ||| || ||||||||||||||| |||| ||||||||||||||| |||||||| Sbjct: 31496 gctcccacgggtgatggcacccacgaggccgtcctcagctcctacgagtacctcagccag 31437 Query: 541 gg 542 || Sbjct: 31436 gg 31435 Score = 129 bits (65), Expect = 1e-26 Identities = 101/113 (89%) Strand = Plus / Minus Query: 397 cggtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaa 456 ||||||||||| || || ||||||||||| |||||||||||||||||||| ||||||| Sbjct: 35084 cggtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaag 35025 Query: 457 ggcatcgtggactccctgttccaggcccccatgggcgacggcacccacgaggc 509 ||| |||| ||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 35024 ggcctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 552 gtacgacttcgacaacaccatggacgggctgtacatcgcgccggcattcatggacaagct 611 ||||||||||||||||||||||| || | |||||||| || || |||||||||||||| Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 31253 Query: 612 catcgt 617 | |||| Sbjct: 31252 cgtcgt 31247 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 226 atggcttctgctttctcgtccaccgttggagctccgg 262 |||||| |||| ||||| ||||||||||||||||||| Sbjct: 31859 atggctgctgccttctcctccaccgttggagctccgg 31823 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 226 atggcttctgctttctcgtccaccgttggagctccgg 262 ||||||||||||||||| ||||| || ||||| |||| Sbjct: 35797 atggcttctgctttctcctccactgtcggagccccgg 35761
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 170 bits (86), Expect = 3e-39 Identities = 158/182 (86%) Strand = Plus / Minus Query: 361 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 420 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 28304878 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 28304819 Query: 421 atctcggacgaccagcaggacatcactcgggggaaaggcatcgtggactccctgttccag 480 ||||| || ||||||||||||||||| ||||||| || |||| |||||||| |||||| Sbjct: 28304818 atctccgatgaccagcaggacatcaccagggggaagggtttcgtcgactcccttttccag 28304759 Query: 481 gcccccatgggcgacggcacccacgaggccatcctaagctcctacgagtacatcagccag 540 || |||| ||| || ||||||||||||||| |||| ||||||||||||||| |||||||| Sbjct: 28304758 gctcccacgggtgatggcacccacgaggccgtcctcagctcctacgagtacctcagccag 28304699 Query: 541 gg 542 || Sbjct: 28304698 gg 28304697 Score = 129 bits (65), Expect = 1e-26 Identities = 101/113 (89%) Strand = Plus / Minus Query: 397 cggtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaa 456 ||||||||||| || || ||||||||||| |||||||||||||||||||| ||||||| Sbjct: 28308346 cggtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaag 28308287 Query: 457 ggcatcgtggactccctgttccaggcccccatgggcgacggcacccacgaggc 509 ||| |||| ||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 28308286 ggcctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 552 gtacgacttcgacaacaccatggacgggctgtacatcgcgccggcattcatggacaagct 611 ||||||||||||||||||||||| || | |||||||| || || |||||||||||||| Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28304515 Query: 612 catcgt 617 | |||| Sbjct: 28304514 cgtcgt 28304509 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 226 atggcttctgctttctcgtccaccgttggagctccgg 262 |||||| |||| ||||| ||||||||||||||||||| Sbjct: 28305121 atggctgctgccttctcctccaccgttggagctccgg 28305085 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 226 atggcttctgctttctcgtccaccgttggagctccgg 262 ||||||||||||||||| ||||| || ||||| |||| Sbjct: 28309059 atggcttctgctttctcctccactgtcggagccccgg 28309023
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 170 bits (86), Expect = 3e-39 Identities = 158/182 (86%) Strand = Plus / Minus Query: 361 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 420 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 28287327 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 28287268 Query: 421 atctcggacgaccagcaggacatcactcgggggaaaggcatcgtggactccctgttccag 480 ||||| || ||||||||||||||||| ||||||| || |||| |||||||| |||||| Sbjct: 28287267 atctccgatgaccagcaggacatcaccagggggaagggtttcgtcgactcccttttccag 28287208 Query: 481 gcccccatgggcgacggcacccacgaggccatcctaagctcctacgagtacatcagccag 540 || |||| ||| || ||||||||||||||| |||| ||||||||||||||| |||||||| Sbjct: 28287207 gctcccacgggtgatggcacccacgaggccgtcctcagctcctacgagtacctcagccag 28287148 Query: 541 gg 542 || Sbjct: 28287147 gg 28287146 Score = 129 bits (65), Expect = 1e-26 Identities = 101/113 (89%) Strand = Plus / Minus Query: 397 cggtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaa 456 ||||||||||| || || ||||||||||| |||||||||||||||||||| ||||||| Sbjct: 28290795 cggtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaag 28290736 Query: 457 ggcatcgtggactccctgttccaggcccccatgggcgacggcacccacgaggc 509 ||| |||| ||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 28290735 ggcctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 552 gtacgacttcgacaacaccatggacgggctgtacatcgcgccggcattcatggacaagct 611 ||||||||||||||||||||||| || | |||||||| || || |||||||||||||| Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28286964 Query: 612 catcgt 617 | |||| Sbjct: 28286963 cgtcgt 28286958 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 226 atggcttctgctttctcgtccaccgttggagctccgg 262 |||||| |||| ||||| ||||||||||||||||||| Sbjct: 28287570 atggctgctgccttctcctccaccgttggagctccgg 28287534 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 226 atggcttctgctttctcgtccaccgttggagctccgg 262 ||||||||||||||||| ||||| || ||||| |||| Sbjct: 28291508 atggcttctgctttctcctccactgtcggagccccgg 28291472
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 155 bits (78), Expect = 2e-34 Identities = 144/166 (86%) Strand = Plus / Plus Query: 379 aagcagaccgatgcggaccggtggaagggtctggcctacgacatctcggacgaccagcag 438 ||||||||||| | |||| |||||||||| |||||||||||||||||||||||||||||| Sbjct: 198 aagcagaccgacgaggacaggtggaagggcctggcctacgacatctcggacgaccagcag 257 Query: 439 gacatcactcgggggaaaggcatcgtggactccctgttccaggcccccatgggcgacggc 498 |||||||| |||| || ||| |||| ||| ||| |||||||| || ||||| |||||| Sbjct: 258 gacatcaccaggggcaagggcctcgtcgacaacctcttccaggcgcctatgggggacggc 317 Query: 499 acccacgaggccatcctaagctcctacgagtacatcagccagggcc 544 ||||||| ||| | || ||||||||||| |||||||||||||||| Sbjct: 318 acccacgtcgccgtgctcagctcctacgactacatcagccagggcc 363 Score = 48.1 bits (24), Expect = 0.034 Identities = 36/40 (90%) Strand = Plus / Plus Query: 238 ttctcgtccaccgttggagctccggcgtcgaccccgacca 277 ||||| |||||||| ||||||||||| || |||||||||| Sbjct: 33 ttctcctccaccgtcggagctccggcctccaccccgacca 72
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 133 bits (67), Expect = 8e-28 Identities = 140/166 (84%) Strand = Plus / Plus Query: 379 aagcagaccgatgcggaccggtggaagggtctggcctacgacatctcggacgaccagcag 438 ||||||||||| | |||| |||||||||| |||||||||||||||||||||||||||||| Sbjct: 198 aagcagaccgacgaggacaggtggaagggcctggcctacgacatctcggacgaccagcag 257 Query: 439 gacatcactcgggggaaaggcatcgtggactccctgttccaggcccccatgggcgacggc 498 |||||||| |||| || ||| |||| ||| ||| |||||||| || || ||||| Sbjct: 258 gacatcaccaggggcaagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggc 317 Query: 499 acccacgaggccatcctaagctcctacgagtacatcagccagggcc 544 ||||||| ||| | || ||||||||||| |||||||||||||||| Sbjct: 318 acccacgtcgccgtgctcagctcctacgactacatcagccagggcc 363 Score = 48.1 bits (24), Expect = 0.034 Identities = 36/40 (90%) Strand = Plus / Plus Query: 238 ttctcgtccaccgttggagctccggcgtcgaccccgacca 277 ||||| |||||||| ||||||||||| || |||||||||| Sbjct: 33 ttctcctccaccgtcggagctccggcctccaccccgacca 72
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 129 bits (65), Expect = 1e-26 Identities = 107/121 (88%) Strand = Plus / Plus Query: 417 cgacatctcggacgaccagcaggacatcactcgggggaaaggcatcgtggactccctgtt 476 ||||| |||||| ||||||||||||||||| ||||||| ||||| || ||||||||||| Sbjct: 222 cgacacctcggatgaccagcaggacatcaccagggggaagggcatggtcgactccctgtt 281 Query: 477 ccaggcccccatgggcgacggcacccacgaggccatcctaagctcctacgagtacatcag 536 |||||| |||||||||||||| |||||| | || |||| |||||||||||||||||||| Sbjct: 282 ccaggctcccatgggcgacggaacccacaaccccgtcctgagctcctacgagtacatcag 341 Query: 537 c 537 | Sbjct: 342 c 342
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 129 bits (65), Expect = 1e-26 Identities = 107/121 (88%) Strand = Plus / Plus Query: 417 cgacatctcggacgaccagcaggacatcactcgggggaaaggcatcgtggactccctgtt 476 ||||| |||||| ||||||||||||||||| ||||||| ||||| || ||||||||||| Sbjct: 85 cgacacctcggatgaccagcaggacatcaccagggggaagggcatggtcgactccctgtt 144 Query: 477 ccaggcccccatgggcgacggcacccacgaggccatcctaagctcctacgagtacatcag 536 |||||| |||||||||||||| |||||| | || |||| |||||||||||||||||||| Sbjct: 145 ccaggctcccatgggcgacggaacccacaaccccgtcctgagctcctacgagtacatcag 204 Query: 537 c 537 | Sbjct: 205 c 205
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 129 bits (65), Expect = 1e-26 Identities = 107/121 (88%) Strand = Plus / Plus Query: 417 cgacatctcggacgaccagcaggacatcactcgggggaaaggcatcgtggactccctgtt 476 ||||| |||||| ||||||||||||||||| ||||||| ||||| || ||||||||||| Sbjct: 115 cgacacctcggatgaccagcaggacatcaccagggggaagggcatggtcgactccctgtt 174 Query: 477 ccaggcccccatgggcgacggcacccacgaggccatcctaagctcctacgagtacatcag 536 |||||| |||||||||||||| |||||| | || |||| |||||||||||||||||||| Sbjct: 175 ccaggctcccatgggcgacggaacccacaaccccgtcctgagctcctacgagtacatcag 234 Query: 537 c 537 | Sbjct: 235 c 235
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 107 bits (54), Expect = 4e-20 Identities = 105/122 (86%) Strand = Plus / Plus Query: 361 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 420 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 207 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 266 Query: 421 atctcggacgaccagcaggacatcactcgggggaaaggcatcgtggactccctgttccag 480 ||||| || ||||||||||||||||| ||||||| || |||| |||||||| |||||| Sbjct: 267 atctccgatgaccagcaggacatcaccagggggaagggtttcgtcgactcccttttccag 326 Query: 481 gc 482 || Sbjct: 327 gc 328 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Plus Query: 226 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 285 |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| ||||||| Sbjct: 63 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 122 Query: 286 ggcaagaaggtgaagaa 302 || |||||| ||||||| Sbjct: 123 gggaagaagctgaagaa 139 Score = 79.8 bits (40), Expect = 1e-11 Identities = 85/100 (85%) Strand = Plus / Plus Query: 518 gctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacg 577 |||||||||||||| |||||||||| || | | ||||||||||||||||||||||| | Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386 Query: 578 ggctgtacatcgcgccggcattcatggacaagctcatcgt 617 | | |||||||| || || ||||||||||||||| |||| Sbjct: 387 gcttctacatcgcccctgctttcatggacaagctcgtcgt 426
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/97 (83%) Strand = Plus / Plus Query: 393 ggaccggtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggg 452 |||||| ||||| || |||| ||||| || ||||||||||| |||||||| ||||| || Sbjct: 87 ggaccgatggaaagggttggcttacgatatttcggacgaccaacaggacattactcgagg 146 Query: 453 gaaaggcatcgtggactccctgttccaggcccccatg 489 |||||| || ||||| ||| ||||||| || |||||| Sbjct: 147 gaaagggatggtggattccttgttccaagctcccatg 183
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 58.0 bits (29), Expect = 4e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 393 ggaccggtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggg 452 |||||| ||||| || |||| ||||| || ||||||||||| || ||||| ||||| || Sbjct: 88 ggaccgatggaaagggttggcttacgatatttcggacgaccaacaagacattactcgagg 147 Query: 453 gaaaggcatcgtggactccctgttccaggcccccatg 489 |||||| || ||||| ||| ||||||| || |||||| Sbjct: 148 gaaagggatggtggattccttgttccaagctcccatg 184 Score = 44.1 bits (22), Expect = 0.54 Identities = 43/50 (86%) Strand = Plus / Plus Query: 562 gacaacaccatggacgggctgtacatcgcgccggcattcatggacaagct 611 ||||||| |||||| || | |||||||| || ||||||||||||||||| Sbjct: 257 gacaacaacatggatggtttctacatcgctcctgcattcatggacaagct 306
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 400 tggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaa 455 |||||||||||||||||||| ||||| || ||||| || |||||||| ||||||| Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaa 350
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 54.0 bits (27), Expect = 6e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 517 agctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggac 576 |||||||| |||||||| ||||| ||||| || | |||||||| ||||||| |||||| Sbjct: 397 agctcctatgagtacattagccaaggccttcgcacatacgacttggacaacaacatggat 456 Query: 577 gggctgtacatcgcgccggcattcatggacaagct 611 || | ||||| || || || |||||||||||||| Sbjct: 457 ggattctacattgccccagctttcatggacaagct 491
>emb|AL772194.6| Mouse DNA sequence from clone RP23-331M18 on chromosome 4, complete sequence Length = 176496 Score = 48.1 bits (24), Expect = 0.034 Identities = 24/24 (100%) Strand = Plus / Minus Query: 21 cttttatcctatcagctccatcca 44 |||||||||||||||||||||||| Sbjct: 147549 cttttatcctatcagctccatcca 147526
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 589 gcgccggcattcatggacaagct 611 ||||||||||||||||||||||| Sbjct: 637974 gcgccggcattcatggacaagct 637996
>ref|NM_001034112.1| Rattus norvegicus MAX-like protein X (Mlx), mRNA Length = 1913 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 455 aaggcatcgtggactccctgttccag 480 |||||||| ||||||||||||||||| Sbjct: 734 aaggcatcatggactccctgttccag 759
>ref|XM_853556.1| PREDICTED: Canis familiaris similar to Transcription factor-like protein 4 (Max-like bHLHZip protein) (BigMax protein) (Mlx), transcript variant 2 (LOC607668), mRNA Length = 1055 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 455 aaggcatcgtggactccctgttccag 480 |||||||| ||||||||||||||||| Sbjct: 681 aaggcatcatggactccctgttccag 706
>ref|XM_844284.1| PREDICTED: Canis familiaris similar to Transcription factor-like protein 4 (Max-like bHLHZip protein) (BigMax protein) (Mlx), transcript variant 1 (LOC607668), mRNA Length = 1120 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 455 aaggcatcgtggactccctgttccag 480 |||||||| ||||||||||||||||| Sbjct: 746 aaggcatcatggactccctgttccag 771
>gb|DQ350893.1| Rattus norvegicus strain COP/CrCrl max-like factor protein (Mlx) mRNA, complete cds Length = 920 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 455 aaggcatcgtggactccctgttccag 480 |||||||| ||||||||||||||||| Sbjct: 571 aaggcatcatggactccctgttccag 596
>gb|DQ350892.1| Rattus norvegicus strain ACI/SegHsd max-like factor protein (Mlx) mRNA, complete cds Length = 920 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 455 aaggcatcgtggactccctgttccag 480 |||||||| ||||||||||||||||| Sbjct: 571 aaggcatcatggactccctgttccag 596
>gb|DQ350891.1| Rattus norvegicus strain BN/SsNHsd max-like factor protein (Mlx) mRNA, complete cds Length = 920 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 455 aaggcatcgtggactccctgttccag 480 |||||||| ||||||||||||||||| Sbjct: 571 aaggcatcatggactccctgttccag 596
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 512 tcctaagctcctacgagtacatcagc 537 |||| ||||||||||||||||||||| Sbjct: 16 tcctgagctcctacgagtacatcagc 41 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 583 tacatcgcgccggcattcatggacaagct 611 |||||||| ||||| |||||||||||||| Sbjct: 87 tacatcgctccggccttcatggacaagct 115
>emb|BX085195.5| Zebrafish DNA sequence from clone DKEY-226A5 in linkage group 3, complete sequence Length = 227111 Score = 44.1 bits (22), Expect = 0.54 Identities = 28/30 (93%) Strand = Plus / Plus Query: 159 atcaaattaattagaaactactgtaattaa 188 |||||||||||||||||||| | ||||||| Sbjct: 94967 atcaaattaattagaaactattctaattaa 94996
>gb|DQ306205.1| Takifugu rubripes odorant receptor (OR11306-1) gene, complete cds Length = 771 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 324 gatgaagagcagggtggtgagggtca 349 |||||||||||||||||||| ||||| Sbjct: 51 gatgaagagcagggtggtgacggtca 26
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 471 cctgttccaggcccccatgggcgacg 496 |||||||||||||||| ||||||||| Sbjct: 1044278 cctgttccaggcccccctgggcgacg 1044253
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 42.1 bits (21), Expect = 2.1 Identities = 51/61 (83%) Strand = Plus / Plus Query: 551 agtacgacttcgacaacaccatggacgggctgtacatcgcgccggcattcatggacaagc 610 ||||| |||| ||||||| ||||||||| | ||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 611 t 611 | Sbjct: 491 t 491
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 42.1 bits (21), Expect = 2.1 Identities = 51/61 (83%) Strand = Plus / Plus Query: 551 agtacgacttcgacaacaccatggacgggctgtacatcgcgccggcattcatggacaagc 610 ||||| |||| ||||||| ||||||||| | ||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 611 t 611 | Sbjct: 491 t 491
>gb|AC182435.3| Mus musculus chromosome 8, clone wi1-1119F24, complete sequence Length = 37516 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 468 ctccctgttccaggcccccat 488 ||||||||||||||||||||| Sbjct: 35702 ctccctgttccaggcccccat 35722
>emb|BX248357.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 4/8 Length = 349535 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 ataccactgcacgtacgcaca 159 ||||||||||||||||||||| Sbjct: 40071 ataccactgcacgtacgcaca 40091
>gb|AC149051.4| Mus musculus BAC clone RP24-325F10 from 8, complete sequence Length = 184939 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 gcacatcaaattaattagaaa 175 ||||||||||||||||||||| Sbjct: 141560 gcacatcaaattaattagaaa 141580
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 40.1 bits (20), Expect = 8.4 Identities = 80/100 (80%) Strand = Plus / Plus Query: 512 tcctaagctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacacca 571 |||| ||||| ||||| ||| | ||||| ||||| || ||||| |||| ||||||| | Sbjct: 497 tccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatga 556 Query: 572 tggacgggctgtacatcgcgccggcattcatggacaagct 611 |||| ||| | ||||| || || || |||||||||||||| Sbjct: 557 tggatgggttttacattgctcctgctttcatggacaagct 596
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 40.1 bits (20), Expect = 8.4 Identities = 80/100 (80%) Strand = Plus / Plus Query: 512 tcctaagctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacacca 571 |||| ||||| ||||| ||| | ||||| ||||| || ||||| |||| ||||||| | Sbjct: 497 tccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatga 556 Query: 572 tggacgggctgtacatcgcgccggcattcatggacaagct 611 |||| ||| | ||||| || || || |||||||||||||| Sbjct: 557 tggatgggttttacattgctcctgctttcatggacaagct 596
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 40.1 bits (20), Expect = 8.4 Identities = 80/100 (80%) Strand = Plus / Plus Query: 512 tcctaagctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacacca 571 |||| ||||| ||||| ||| | ||||| ||||| || ||||| |||| ||||||| | Sbjct: 526 tccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatga 585 Query: 572 tggacgggctgtacatcgcgccggcattcatggacaagct 611 |||| ||| | ||||| || || || |||||||||||||| Sbjct: 586 tggatgggttttacattgctcctgctttcatggacaagct 625
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 492 cgacggcacccacgaggccatcct 515 |||||||||| ||||||||||||| Sbjct: 961727 cgacggcacctacgaggccatcct 961704
>emb|CR388060.19| Zebrafish DNA sequence from clone DKEY-208J8 in linkage group 16, complete sequence Length = 213586 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 acatcaaattaattagaaac 176 |||||||||||||||||||| Sbjct: 134825 acatcaaattaattagaaac 134844
>ref|XM_546868.2| PREDICTED: Canis familiaris similar to dipeptidase 3 (LOC489748), mRNA Length = 1368 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 ggcacccacgaggccatcct 515 |||||||||||||||||||| Sbjct: 309 ggcacccacgaggccatcct 290
>gb|AC108416.5| Mus musculus chromosome 14, clone RP23-114J12, complete sequence Length = 227555 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 ggcaacaagatgaagagcagggtg 339 ||||| |||||||||||||||||| Sbjct: 71317 ggcaagaagatgaagagcagggtg 71340
>emb|AL162412.11| Human DNA sequence from clone RP11-109D9 on chromosome 9 Contains the 5' end of the APBA1 gene for myloid beta (A4) precursor protein-binding, family A, member 1 (X11), two novel genes, the 5' end of a novel gene possible ortholog of mouse RIKEN cDNA 1700028P14 gene and two CpG islands, complete sequence Length = 189277 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 cacatcaaattaattagaaa 175 |||||||||||||||||||| Sbjct: 60853 cacatcaaattaattagaaa 60834
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 40.1 bits (20), Expect = 8.4 Identities = 80/100 (80%) Strand = Plus / Plus Query: 512 tcctaagctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacacca 571 |||| ||||| ||||| ||| | ||||| ||||| || ||||| |||| ||||||| | Sbjct: 408 tccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatga 467 Query: 572 tggacgggctgtacatcgcgccggcattcatggacaagct 611 |||| ||| | ||||| || || || |||||||||||||| Sbjct: 468 tggatgggttttacattgctcctgctttcatggacaagct 507
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 40.1 bits (20), Expect = 8.4 Identities = 80/100 (80%) Strand = Plus / Plus Query: 512 tcctaagctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacacca 571 |||| ||||| ||||| ||| | ||||| ||||| || ||||| |||| ||||||| | Sbjct: 323 tccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatga 382 Query: 572 tggacgggctgtacatcgcgccggcattcatggacaagct 611 |||| ||| | ||||| || || || |||||||||||||| Sbjct: 383 tggatgggttttacattgctcctgctttcatggacaagct 422
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 ttcctgggcaagaaggtgaa 299 |||||||||||||||||||| Sbjct: 2810912 ttcctgggcaagaaggtgaa 2810931
>emb|BX936324.6| Zebrafish DNA sequence from clone CH211-74F16 in linkage group 3, complete sequence Length = 154312 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 atcaaattaattagaaacta 178 |||||||||||||||||||| Sbjct: 118154 atcaaattaattagaaacta 118135
>emb|BX511260.11| Zebrafish DNA sequence from clone CH211-121A2, complete sequence Length = 190733 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 taattagaaactactgtaattaag 189 |||||| ||||||||||||||||| Sbjct: 63356 taattacaaactactgtaattaag 63379
>emb|BX927222.8| Zebrafish DNA sequence from clone CH211-256M12 in linkage group 16, complete sequence Length = 154714 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 acatcaaattaattagaaac 176 |||||||||||||||||||| Sbjct: 111012 acatcaaattaattagaaac 110993
>dbj|AK129018.1| Mus musculus cDNA fis, clone TRACH3033868, highly similar to Homo sapiens semaphorin sem2 Length = 4540 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 ggcaacaagatgaagagcagggtg 339 ||||| |||||||||||||||||| Sbjct: 2328 ggcaagaagatgaagagcagggtg 2351
>dbj|AK137463.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830005K22 product:Semaphorin sem2 (FLJ00014 protein) homolog [Homo sapiens], full insert sequence Length = 4532 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 ggcaacaagatgaagagcagggtg 339 ||||| |||||||||||||||||| Sbjct: 2330 ggcaagaagatgaagagcagggtg 2353
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 40.1 bits (20), Expect = 8.4 Identities = 80/100 (80%) Strand = Plus / Plus Query: 512 tcctaagctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacacca 571 |||| ||||| ||||| ||| | ||||| ||||| || ||||| |||| ||||||| | Sbjct: 411 tccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatga 470 Query: 572 tggacgggctgtacatcgcgccggcattcatggacaagct 611 |||| ||| | ||||| || || || |||||||||||||| Sbjct: 471 tggatgggttttacattgctcctgctttcatggacaagct 510
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 40.1 bits (20), Expect = 8.4 Identities = 80/100 (80%) Strand = Plus / Plus Query: 512 tcctaagctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacacca 571 |||| ||||| ||||| ||| | ||||| ||||| || ||||| |||| ||||||| | Sbjct: 400 tccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatga 459 Query: 572 tggacgggctgtacatcgcgccggcattcatggacaagct 611 |||| ||| | ||||| || || || |||||||||||||| Sbjct: 460 tggatgggttttacattgctcctgctttcatggacaagct 499
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 40.1 bits (20), Expect = 8.4 Identities = 80/100 (80%) Strand = Plus / Plus Query: 512 tcctaagctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacacca 571 |||| ||||| ||||| ||| | ||||| ||||| || ||||| |||| ||||||| | Sbjct: 408 tccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatga 467 Query: 572 tggacgggctgtacatcgcgccggcattcatggacaagct 611 |||| ||| | ||||| || || || |||||||||||||| Sbjct: 468 tggatgggttttacattgctcctgctttcatggacaagct 507
>emb|AL732624.6| Mouse DNA sequence from clone RP23-118D1 on chromosome 4, complete sequence Length = 110038 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 cacatcaaattaattagaaa 175 |||||||||||||||||||| Sbjct: 30211 cacatcaaattaattagaaa 30192
>gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045C13, from Chromosome 10, complete sequence Length = 161250 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 ctctcttttatcctatcagc 36 |||||||||||||||||||| Sbjct: 121074 ctctcttttatcctatcagc 121055
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 40.1 bits (20), Expect = 8.4 Identities = 80/100 (80%) Strand = Plus / Plus Query: 512 tcctaagctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacacca 571 |||| ||||| ||||| ||| | ||||| ||||| || ||||| |||| ||||||| | Sbjct: 411 tccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatga 470 Query: 572 tggacgggctgtacatcgcgccggcattcatggacaagct 611 |||| ||| | ||||| || || || |||||||||||||| Sbjct: 471 tggatgggttttacattgctcctgctttcatggacaagct 510
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 ctctcttttatcctatcagc 36 |||||||||||||||||||| Sbjct: 9888595 ctctcttttatcctatcagc 9888576
>dbj|AB127607.1| Mus musculus Sema3G mRNA for Semaphorin 3G, complete cds Length = 3686 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 ggcaacaagatgaagagcagggtg 339 ||||| |||||||||||||||||| Sbjct: 2313 ggcaagaagatgaagagcagggtg 2336
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 40.1 bits (20), Expect = 8.4 Identities = 80/100 (80%) Strand = Plus / Plus Query: 512 tcctaagctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacacca 571 |||| ||||| ||||| ||| | ||||| ||||| || ||||| |||| ||||||| | Sbjct: 526 tccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatga 585 Query: 572 tggacgggctgtacatcgcgccggcattcatggacaagct 611 |||| ||| | ||||| || || || |||||||||||||| Sbjct: 586 tggatgggttttacattgctcctgctttcatggacaagct 625
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 ggtcatggcggccaaaaagg 364 |||||||||||||||||||| Sbjct: 711783 ggtcatggcggccaaaaagg 711764
>emb|BX255909.5| Zebrafish DNA sequence from clone CH211-235O3 in linkage group 19, complete sequence Length = 180994 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 166 taattagaaactactgtaattaag 189 |||||| ||||||||||||||||| Sbjct: 115724 taattacaaactactgtaattaag 115701
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 40.1 bits (20), Expect = 8.4 Identities = 80/100 (80%) Strand = Plus / Plus Query: 512 tcctaagctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacacca 571 |||| ||||| ||||| ||| | ||||| ||||| || ||||| |||| ||||||| | Sbjct: 392 tccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatga 451 Query: 572 tggacgggctgtacatcgcgccggcattcatggacaagct 611 |||| ||| | ||||| || || || |||||||||||||| Sbjct: 452 tggatgggttttacattgctcctgctttcatggacaagct 491
>gb|AC006566.2|AC006566 Homo sapiens chromosome 18, clone hRPK.376_P_6, complete sequence Length = 189199 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 aaattaattagaaactactg 181 |||||||||||||||||||| Sbjct: 129327 aaattaattagaaactactg 129308
>ref|NM_001025379.1| Mus musculus sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G (Sema3g), mRNA Length = 3686 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 ggcaacaagatgaagagcagggtg 339 ||||| |||||||||||||||||| Sbjct: 2313 ggcaagaagatgaagagcagggtg 2336
>dbj|AP005900.1| Homo sapiens genomic DNA, chromosome 18p clone:RP11-931H21, complete sequence Length = 215253 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 aaattaattagaaactactg 181 |||||||||||||||||||| Sbjct: 187843 aaattaattagaaactactg 187862
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gacgaccagcaggacatcac 446 |||||||||||||||||||| Sbjct: 1452086 gacgaccagcaggacatcac 1452067
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 ctctcttttatcctatcagc 36 |||||||||||||||||||| Sbjct: 9894634 ctctcttttatcctatcagc 9894615
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 40.1 bits (20), Expect = 8.4 Identities = 74/92 (80%) Strand = Plus / Plus Query: 520 tcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacggg 579 |||||||| ||| ||||||| || || || ||||| |||| ||||||| ||||||| Sbjct: 396 tcctacgaatacgtcagccaaggtcttcgccagtacaacttggacaacaagttggacgga 455 Query: 580 ctgtacatcgcgccggcattcatggacaagct 611 | |||||||| || || |||||||||||||| Sbjct: 456 ttctacatcgctcctgctttcatggacaagct 487 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,575,041 Number of Sequences: 3902068 Number of extensions: 4575041 Number of successful extensions: 88570 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88125 Number of HSP's gapped (non-prelim): 424 length of query: 617 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 594 effective length of database: 17,143,297,704 effective search space: 10183118836176 effective search space used: 10183118836176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
