>Y1000_PSEAE (P20581) Hypothetical protein PA1000|
          Length = 301

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 56  MERTQRLPLKLNCNLKHQSLRNGRVNQEG-QSRFVQCLKMLK 178
           +ER QRLP  L     H  L  GR+  +G +S + +CL++ +
Sbjct: 205 LERLQRLPTLLQLIPGHGGLLRGRLAADGAESAYTECLRLCR 246

>RPOC_AGRT5 (Q8UE09) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1402

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 197  LMKRMMIRKIQLLLVVHGRG---ALLDQRSVRKMKKLVKHNLKVFQLAGSLVRGGSHLA 364
            +  R ++R  + +L+  GR     +LD+R V +  + V +  K+F   G  V+ G  LA
Sbjct: 956  IKNRNILRNSEGVLIAMGRNMSVTILDERGVERSSQRVAYGSKIFVDDGDKVKRGQRLA 1014

>TIP60_DROME (Q960X4) Histone acetyltransferase Tip60 (EC 2.3.1.48)|
          Length = 541

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 91  IQLQGQPLSPFHFGPQRQLLCQLPC 17
           I+L    + P++F P  Q LCQ+PC
Sbjct: 263 IELGRHRIKPWYFSPYPQELCQMPC 287

>RPOC_RHIME (Q92QH6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1401

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 197  LMKRMMIRKIQLLLVVHGRGA---LLDQRSVRKMKKLVKHNLKVFQLAGSLVRGGSHLA 364
            +  R M+R    +LV  GR     +LD+R V +  + V +  K+F   G  V+ G   A
Sbjct: 955  IKNRNMLRNSDGVLVAMGRNMAIQILDERGVERSSQRVAYGSKIFVDDGDKVKRGQRFA 1013

>CLF1_CANAL (Q5AED6) Pre-mRNA-splicing factor CLF1|
          Length = 758

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 148 SVRAVLEDAKVVLGGNFDEKNDDQEDSVTV 237
           +VRAV E A   L  N  E+NDD E+  T+
Sbjct: 275 TVRAVFESAVDTLLSNKSEENDDDEEFATI 304


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.309    0.130    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,738,209
Number of Sequences: 219361
Number of extensions: 1024571
Number of successful extensions: 1886
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1886
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)