ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah62p10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467417.1| Oryza sativa (japonica cultivar-group), mRNA 115 1e-22
2dbj|AB110204.1| Oryza sativa (japonica cultivar-group) mRNA for ... 115 1e-22
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
4dbj|AP004161.3| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
5ref|XM_467418.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.39
6gb|AE010141.1| Pyrococcus furiosus DSM 3638, section 16 of 173 o... 44 0.39
7dbj|AK109259.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.39
8ref|XM_528429.1| PREDICTED: Pan troglodytes similar to G protein... 42 1.5
9ref|NM_195277.1| Oryza sativa (japonica cultivar-group) putative... 42 1.5
10gb|AC162037.2| Mus musculus chromosome 8, clone RP23-35K23, comp... 42 1.5
11gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
12ref|XM_595269.2| PREDICTED: Bos taurus similar to G protein-coup... 42 1.5
13gb|AC119968.9| Mus musculus chromosome 8, clone RP24-473C10, com... 42 1.5
14gb|AC124578.4| Mus musculus BAC clone RP23-166C2 from 18, comple... 42 1.5
15ref|XM_761577.1| Theileria parva strain Muguga chromosome 1 hypo... 42 1.5
16emb|CR932961.2| Medicago truncatula chromosome 5 clone mth2-62c4... 42 1.5
17gb|AY278562.1| Homo sapiens G-protein coupled receptor GPR144 (G... 42 1.5
18emb|AL606965.20| Mouse DNA sequence from clone RP23-313I15 on ch... 42 1.5
19gb|BC102200.1| Bos taurus 26S proteasome p40.5 subunit, mRNA (cD... 42 1.5
20dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
21gb|AY255620.1| Homo sapiens G protein-coupled receptor PGR24 mRN... 42 1.5
22gb|AC157493.3| Mus musculus BAC clone RP23-321K7 from chromosome... 42 1.5
23gb|AY107338.1| Zea mays PCO113049 mRNA sequence 42 1.5
24gb|BT021056.1| Bos taurus proteasome (prosome, macropain) 26S su... 42 1.5
25ref|NM_182611.1| Homo sapiens G protein-coupled receptor 144 (GP... 42 1.5
26gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
27emb|AL137846.24| Human DNA sequence from clone RP11-101K10 on ch... 42 1.5
28ref|NM_001024532.2| Bos taurus 26S proteasome p40.5 subunit (PSM... 42 1.5
29dbj|AB065601.1| Homo sapiens gene for seven transmembrane helix ... 42 1.5
30ref|NM_152818.2| Mus musculus oxysterol binding protein 2 (Osbp2... 40 6.1
31gb|AC158554.6| Mus musculus chromosome 15, clone RP23-353O17, co... 40 6.1
32ref|NM_001001876.1| Gallus gallus basement membrane-specific hep... 40 6.1
33gb|BC058602.1| Mus musculus oxysterol binding protein 2, mRNA (c... 40 6.1
34gb|BC031794.1| Mus musculus oxysterol binding protein 2, mRNA (c... 40 6.1
35gb|U42894.1|USU42894 Unidentified soil organism R6-45 16S rRNA g... 40 6.1
36ref|XM_618841.3| PREDICTED: Mus musculus oxysterol binding prote... 40 6.1
37ref|XM_757515.1| Ustilago maydis 521 hypothetical protein (UM064... 40 6.1
38ref|XM_748689.1| Aspergillus fumigatus Af293 Rho guanyl nucleoti... 40 6.1
39gb|BC058356.1| Mus musculus oxysterol binding protein 2, mRNA (c... 40 6.1
40gb|AC111092.10| Mus musculus chromosome 12, clone RP23-168O9, co... 40 6.1
41gb|AC122722.7| Medicago truncatula clone mth1-3f12, complete seq... 40 6.1
42gb|DQ129290.1| Uncultured bacterium clone AKIW700 16S ribosomal ... 40 6.1
43gb|AC159379.14| Mus musculus 10 BAC RP23-210F14 (Roswell Park Ca... 40 6.1
44emb|AL731853.9| Mouse DNA sequence from clone RP23-128G5 on chro... 40 6.1
45emb|AJ584653.1| Gallus gallus mRNA for basement membrane-specifi... 40 6.1
46emb|BX323576.9| Zebrafish DNA sequence from clone DKEYP-77A12 in... 40 6.1
47gb|AC010602.7| Homo sapiens chromosome 5 clone CTB-122H10, compl... 40 6.1
48dbj|AK044598.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 40 6.1
49gb|BC051185.1| Mus musculus oxysterol binding protein 2, mRNA (c... 40 6.1
50dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
51dbj|AP002484.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
52gb|AE016754.1| Mus musculus chromosome 10 high-growth region, se... 40 6.1
53emb|BX247878.5| Zebrafish DNA sequence from clone CH211-266O5 in... 40 6.1
54gb|AC159324.2| Mus musculus BAC clone RP23-9D1 from chromosome 1... 40 6.1 
>ref|XM_467417.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3468

 Score =  115 bits (58), Expect = 1e-22
 Identities = 151/178 (84%), Gaps = 8/178 (4%)
 Strand = Plus / Plus

                                                                        
Query: 164  ttgaagatgctaaagtagtacttggtgggaattttgatgaaaagaatgatgat---cagg 220
            ||||||||||||||| | ||||||||| |||||| || | ||| || ||||||   ||||
Sbjct: 2822 ttgaagatgctaaagaaatacttggtgagaatttagaagtaaaaaaggatgatggccagg 2881

                                                                        
Query: 221  aagattcagttactgttggtggtacacggaagaggcgctttgctgga-ccagagatcagt 279
             ||||||||||||||| ||||||||||||||| |||||||||||||| ||| | ||||||
Sbjct: 2882 gagattcagttactgtgggtggtacacggaagcggcgctttgctggagccaca-atcagt 2940

                                                                      
Query: 280  gaggaagatgaagaagttagtgaagcacaatctgaaagtgtttcagttggcgggcagc 337
            ||| ||||||| ||    |||||||| || ||||||||||||||| |||| |||||||
Sbjct: 2941 gagcaagatgagga---cagtgaagctcattctgaaagtgtttcacttggagggcagc 2995



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                          
Query: 380  caggtgaaaaacgctacaatttgagacgcactacagttgcaaatgc 425
            |||| ||||||||||||||  | || ||||| ||||||||||||||
Sbjct: 3038 caggagaaaaacgctacaacctcaggcgcaccacagttgcaaatgc 3083
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>dbj|AB110204.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein,
            complete cds, contig of clone: OsNMCP1aSE2Nco-5 and
            12FPG031
          Length = 3708

 Score =  115 bits (58), Expect = 1e-22
 Identities = 151/178 (84%), Gaps = 8/178 (4%)
 Strand = Plus / Plus

                                                                        
Query: 164  ttgaagatgctaaagtagtacttggtgggaattttgatgaaaagaatgatgat---cagg 220
            ||||||||||||||| | ||||||||| |||||| || | ||| || ||||||   ||||
Sbjct: 2822 ttgaagatgctaaagaaatacttggtgagaatttagaagtaaaaaaggatgatggccagg 2881

                                                                        
Query: 221  aagattcagttactgttggtggtacacggaagaggcgctttgctgga-ccagagatcagt 279
             ||||||||||||||| ||||||||||||||| |||||||||||||| ||| | ||||||
Sbjct: 2882 gagattcagttactgtgggtggtacacggaagcggcgctttgctggagccaca-atcagt 2940

                                                                      
Query: 280  gaggaagatgaagaagttagtgaagcacaatctgaaagtgtttcagttggcgggcagc 337
            ||| ||||||| ||    |||||||| || ||||||||||||||| |||| |||||||
Sbjct: 2941 gagcaagatgagga---cagtgaagctcattctgaaagtgtttcacttggagggcagc 2995



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                          
Query: 380  caggtgaaaaacgctacaatttgagacgcactacagttgcaaatgc 425
            |||| ||||||||||||||  | || ||||| ||||||||||||||
Sbjct: 3038 caggagaaaaacgctacaacctcaggcgcaccacagttgcaaatgc 3083
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  115 bits (58), Expect = 1e-22
 Identities = 151/178 (84%), Gaps = 8/178 (4%)
 Strand = Plus / Minus

                                                                            
Query: 164      ttgaagatgctaaagtagtacttggtgggaattttgatgaaaagaatgatgat---cagg 220
                ||||||||||||||| | ||||||||| |||||| || | ||| || ||||||   ||||
Sbjct: 29402118 ttgaagatgctaaagaaatacttggtgagaatttagaagtaaaaaaggatgatggccagg 29402059

                                                                            
Query: 221      aagattcagttactgttggtggtacacggaagaggcgctttgctgga-ccagagatcagt 279
                 ||||||||||||||| ||||||||||||||| |||||||||||||| ||| | ||||||
Sbjct: 29402058 gagattcagttactgtgggtggtacacggaagcggcgctttgctggagccaca-atcagt 29402000

                                                                          
Query: 280      gaggaagatgaagaagttagtgaagcacaatctgaaagtgtttcagttggcgggcagc 337
                ||| ||||||| ||    |||||||| || ||||||||||||||| |||| |||||||
Sbjct: 29401999 gagcaagatgagga---cagtgaagctcattctgaaagtgtttcacttggagggcagc 29401945
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>dbj|AP004161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1311_H06
          Length = 139868

 Score =  115 bits (58), Expect = 1e-22
 Identities = 151/178 (84%), Gaps = 8/178 (4%)
 Strand = Plus / Minus

                                                                         
Query: 164   ttgaagatgctaaagtagtacttggtgggaattttgatgaaaagaatgatgat---cagg 220
             ||||||||||||||| | ||||||||| |||||| || | ||| || ||||||   ||||
Sbjct: 52990 ttgaagatgctaaagaaatacttggtgagaatttagaagtaaaaaaggatgatggccagg 52931

                                                                         
Query: 221   aagattcagttactgttggtggtacacggaagaggcgctttgctgga-ccagagatcagt 279
              ||||||||||||||| ||||||||||||||| |||||||||||||| ||| | ||||||
Sbjct: 52930 gagattcagttactgtgggtggtacacggaagcggcgctttgctggagccaca-atcagt 52872

                                                                       
Query: 280   gaggaagatgaagaagttagtgaagcacaatctgaaagtgtttcagttggcgggcagc 337
             ||| ||||||| ||    |||||||| || ||||||||||||||| |||| |||||||
Sbjct: 52871 gagcaagatgagga---cagtgaagctcattctgaaagtgtttcacttggagggcagc 52817
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>ref|XM_467418.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 567

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 164 ttgaagatgctaaagtagtacttggtgggaattt 197
           ||||||||||||||| | ||||||||| ||||||
Sbjct: 528 ttgaagatgctaaagaaatacttggtgagaattt 561
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>gb|AE010141.1| Pyrococcus furiosus DSM 3638, section 16 of 173 of the complete
            genome
          Length = 12352

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 276  cagtgaggaagatgaagaagtt 297
            ||||||||||||||||||||||
Sbjct: 1866 cagtgaggaagatgaagaagtt 1887
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>dbj|AK109259.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-185-A11, full
           insert sequence
          Length = 567

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 164 ttgaagatgctaaagtagtacttggtgggaattt 197
           ||||||||||||||| | ||||||||| ||||||
Sbjct: 528 ttgaagatgctaaagaaatacttggtgagaattt 561
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>ref|XM_528429.1| PREDICTED: Pan troglodytes similar to G protein-coupled receptor 144;
            G-protein coupled receptor GPR144 (LOC473059), mRNA
          Length = 3456

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 425  ccacagcagcagcccctccac 445
            |||||||||||||||||||||
Sbjct: 2877 ccacagcagcagcccctccac 2857
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>ref|NM_195277.1| Oryza sativa (japonica cultivar-group) putative gag-pol polyprotein
            (OSJNBb0038H12.4), mRNA
          Length = 2283

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 413  cagttgcaaatgccacagcag 433
            |||||||||||||||||||||
Sbjct: 2243 cagttgcaaatgccacagcag 2263
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>gb|AC162037.2| Mus musculus chromosome 8, clone RP23-35K23, complete sequence
          Length = 241548

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 160    gtgcttgaagatgctaaagta 180
              |||||||||||||||||||||
Sbjct: 238577 gtgcttgaagatgctaaagta 238557
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>gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0038H12 map E60284SA, complete sequence
          Length = 139190

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 413   cagttgcaaatgccacagcag 433
             |||||||||||||||||||||
Sbjct: 14896 cagttgcaaatgccacagcag 14916
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>ref|XM_595269.2| PREDICTED: Bos taurus similar to G protein-coupled receptor 144
           (LOC517106), mRNA
          Length = 1776

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 425 ccacagcagcagcccctccac 445
           |||||||||||||||||||||
Sbjct: 951 ccacagcagcagcccctccac 931
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>gb|AC119968.9| Mus musculus chromosome 8, clone RP24-473C10, complete sequence
          Length = 202850

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 160    gtgcttgaagatgctaaagta 180
              |||||||||||||||||||||
Sbjct: 162653 gtgcttgaagatgctaaagta 162673
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>gb|AC124578.4| Mus musculus BAC clone RP23-166C2 from 18, complete sequence
          Length = 213229

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 422   atgccacagcagcagcccctc 442
             |||||||||||||||||||||
Sbjct: 37208 atgccacagcagcagcccctc 37188
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>ref|XM_761577.1| Theileria parva strain Muguga chromosome 1 hypothetical protein
            (TP01_1149) partial mRNA
          Length = 3339

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 276  cagtgaggaagatgaagaagttagt 300
            |||||| ||||||||||||||||||
Sbjct: 2211 cagtgaagaagatgaagaagttagt 2235
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>emb|CR932961.2| Medicago truncatula chromosome 5 clone mth2-62c4, COMPLETE SEQUENCE
          Length = 119142

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 129    taaaccaagaaggacaaagtc 149
              |||||||||||||||||||||
Sbjct: 104987 taaaccaagaaggacaaagtc 104967
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>gb|AY278562.1| Homo sapiens G-protein coupled receptor GPR144 (GPR144) mRNA,
            complete cds
          Length = 2892

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 425  ccacagcagcagcccctccac 445
            |||||||||||||||||||||
Sbjct: 2241 ccacagcagcagcccctccac 2221
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>emb|AL606965.20| Mouse DNA sequence from clone RP23-313I15 on chromosome 13 Contains a
              peptidylprolyl isomerase D (cyclophilin D) (Ppid)
              pseudogene and a sperm specific lactate dehydrogenase 3C
              (Ldh3) pseudogene, complete sequence
          Length = 190594

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 127    ggtaaaccaagaaggacaaag 147
              |||||||||||||||||||||
Sbjct: 108059 ggtaaaccaagaaggacaaag 108039
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>gb|BC102200.1| Bos taurus 26S proteasome p40.5 subunit, mRNA (cDNA clone
           MGC:127122 IMAGE:7944308), complete cds
          Length = 1676

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 216 tcaggaagattcagttactgt 236
           |||||||||||||||||||||
Sbjct: 893 tcaggaagattcagttactgt 913
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 413     cagttgcaaatgccacagcag 433
               |||||||||||||||||||||
Sbjct: 5908987 cagttgcaaatgccacagcag 5908967
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>gb|AY255620.1| Homo sapiens G protein-coupled receptor PGR24 mRNA, partial cds
          Length = 837

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 425 ccacagcagcagcccctccac 445
           |||||||||||||||||||||
Sbjct: 387 ccacagcagcagcccctccac 367
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>gb|AC157493.3| Mus musculus BAC clone RP23-321K7 from chromosome 13, complete sequence
          Length = 184868

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 127    ggtaaaccaagaaggacaaag 147
              |||||||||||||||||||||
Sbjct: 146793 ggtaaaccaagaaggacaaag 146813
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>gb|AY107338.1| Zea mays PCO113049 mRNA sequence
          Length = 866

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 313 gaaagtgtttcagttggcgggcagcctcgtaagaggaggca 353
           |||||||||||| |||| |||||||  ||||||||| ||||
Sbjct: 15  gaaagtgtttcacttggagggcagcgccgtaagaggcggca 55
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>gb|BT021056.1| Bos taurus proteasome (prosome, macropain) 26S subunit, non-ATPase,
           13 (PSMD13), mRNA, complete cds
          Length = 1569

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 216 tcaggaagattcagttactgt 236
           |||||||||||||||||||||
Sbjct: 850 tcaggaagattcagttactgt 870
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>ref|NM_182611.1| Homo sapiens G protein-coupled receptor 144 (GPR144), mRNA
          Length = 2892

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 425  ccacagcagcagcccctccac 445
            |||||||||||||||||||||
Sbjct: 2241 ccacagcagcagcccctccac 2221
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 413     cagttgcaaatgccacagcag 433
               |||||||||||||||||||||
Sbjct: 5910173 cagttgcaaatgccacagcag 5910153
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>emb|AL137846.24| Human DNA sequence from clone RP11-101K10 on chromosome 9, complete
              sequence
          Length = 162839

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 425    ccacagcagcagcccctccac 445
              |||||||||||||||||||||
Sbjct: 142785 ccacagcagcagcccctccac 142765
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>ref|NM_001024532.2| Bos taurus 26S proteasome p40.5 subunit (PSMD13), mRNA
          Length = 1676

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 216 tcaggaagattcagttactgt 236
           |||||||||||||||||||||
Sbjct: 893 tcaggaagattcagttactgt 913
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>dbj|AB065601.1| Homo sapiens gene for seven transmembrane helix receptor, complete
            cds, isolate:CBRC7TM_164
          Length = 18512

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 425  ccacagcagcagcccctccac 445
            |||||||||||||||||||||
Sbjct: 3582 ccacagcagcagcccctccac 3562
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>ref|NM_152818.2| Mus musculus oxysterol binding protein 2 (Osbp2), mRNA
          Length = 4138

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 270  agagatcagtgaggaagatgaaga 293
            ||||| ||||||||||||||||||
Sbjct: 1353 agagaacagtgaggaagatgaaga 1376
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>gb|AC158554.6| Mus musculus chromosome 15, clone RP23-353O17, complete sequence
          Length = 192019

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   cgtaagaggaggcagccatc 359
             ||||||||||||||||||||
Sbjct: 98166 cgtaagaggaggcagccatc 98185
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>ref|NM_001001876.1| Gallus gallus basement membrane-specific heparan sulfate proteoglycan
             core protein (HSPG), mRNA
          Length = 12255

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 423   tgccacagcagcagcccctc 442
             ||||||||||||||||||||
Sbjct: 11795 tgccacagcagcagcccctc 11776
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>gb|BC058602.1| Mus musculus oxysterol binding protein 2, mRNA (cDNA clone
           MGC:65555 IMAGE:6467653), complete cds
          Length = 1822

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 270 agagatcagtgaggaagatgaaga 293
           ||||| ||||||||||||||||||
Sbjct: 316 agagaacagtgaggaagatgaaga 339
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>gb|BC031794.1| Mus musculus oxysterol binding protein 2, mRNA (cDNA clone
           MGC:25110 IMAGE:4501119), complete cds
          Length = 3123

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 270 agagatcagtgaggaagatgaaga 293
           ||||| ||||||||||||||||||
Sbjct: 316 agagaacagtgaggaagatgaaga 339
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>gb|U42894.1|USU42894 Unidentified soil organism R6-45 16S rRNA gene, partial sequence
          Length = 270

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 337 cctcgtaagaggaggcagcc 356
           ||||||||||||||||||||
Sbjct: 204 cctcgtaagaggaggcagcc 223
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>ref|XM_618841.3| PREDICTED: Mus musculus oxysterol binding protein 2, transcript
            variant 2 (Osbp2), mRNA
          Length = 3646

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 270  agagatcagtgaggaagatgaaga 293
            ||||| ||||||||||||||||||
Sbjct: 1347 agagaacagtgaggaagatgaaga 1370
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>ref|XM_757515.1| Ustilago maydis 521 hypothetical protein (UM06461.1) partial mRNA
          Length = 4149

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 418 gcaaatgccacagcagcagc 437
           ||||||||||||||||||||
Sbjct: 755 gcaaatgccacagcagcagc 736
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>ref|XM_748689.1| Aspergillus fumigatus Af293 Rho guanyl nucleotide exchange factor
           (Afu5g08550) partial mRNA
          Length = 3600

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 346 aggaggcagccatctggccc 365
           ||||||||||||||||||||
Sbjct: 706 aggaggcagccatctggccc 725
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>gb|BC058356.1| Mus musculus oxysterol binding protein 2, mRNA (cDNA clone
           MGC:66677 IMAGE:5696357), complete cds
          Length = 3281

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 270 agagatcagtgaggaagatgaaga 293
           ||||| ||||||||||||||||||
Sbjct: 496 agagaacagtgaggaagatgaaga 519
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>gb|AC111092.10| Mus musculus chromosome 12, clone RP23-168O9, complete sequence
          Length = 211926

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 423   tgccacagcagcagcccctc 442
             ||||||||||||||||||||
Sbjct: 56574 tgccacagcagcagcccctc 56555
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>gb|AC122722.7| Medicago truncatula clone mth1-3f12, complete sequence
          Length = 116833

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   gaagatgaagaagttagtga 302
             ||||||||||||||||||||
Sbjct: 72633 gaagatgaagaagttagtga 72614
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>gb|DQ129290.1| Uncultured bacterium clone AKIW700 16S ribosomal RNA gene, partial
            sequence
          Length = 1420

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 337  cctcgtaagaggaggcagcc 356
            ||||||||||||||||||||
Sbjct: 1387 cctcgtaagaggaggcagcc 1406
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>gb|AC159379.14| Mus musculus 10 BAC RP23-210F14 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 226172

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   cagtgaggaagatgaagaag 295
             ||||||||||||||||||||
Sbjct: 90653 cagtgaggaagatgaagaag 90672
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>emb|AL731853.9| Mouse DNA sequence from clone RP23-128G5 on chromosome 11 Contains
            the 5' end of the Osbp2 gene for oxysterol binding
            protein 2, a novel pseudogene, two novel genes, the
            Dusp18 gene for dual specificity phosphatase 18 and five
            CpG islands, complete sequence
          Length = 205509

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 270  agagatcagtgaggaagatgaaga 293
            ||||| ||||||||||||||||||
Sbjct: 8199 agagaacagtgaggaagatgaaga 8176
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>emb|AJ584653.1| Gallus gallus mRNA for basement membrane-specific heparan sulfate
             proteoglycan core protein precursor (HSPG gene)
          Length = 12255

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 423   tgccacagcagcagcccctc 442
             ||||||||||||||||||||
Sbjct: 11795 tgccacagcagcagcccctc 11776
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>emb|BX323576.9| Zebrafish DNA sequence from clone DKEYP-77A12 in linkage group 7,
             complete sequence
          Length = 163069

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 378   cacaggtgaaaaacgctacaattt 401
             ||||||||||||||| ||||||||
Sbjct: 94689 cacaggtgaaaaacgatacaattt 94666
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>gb|AC010602.7| Homo sapiens chromosome 5 clone CTB-122H10, complete sequence
          Length = 145424

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     gctggtgctaatgacatggcagtt 27
             ||||||||| ||||||||||||||
Sbjct: 29509 gctggtgctcatgacatggcagtt 29486
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>dbj|AK044598.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
           clone:A930026E05 product:oxysterol binding protein 2,
           full insert sequence
          Length = 2701

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 270 agagatcagtgaggaagatgaaga 293
           ||||| ||||||||||||||||||
Sbjct: 141 agagaacagtgaggaagatgaaga 164
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>gb|BC051185.1| Mus musculus oxysterol binding protein 2, mRNA (cDNA clone
           IMAGE:6467654), containing frame-shift errors
          Length = 1810

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 270 agagatcagtgaggaagatgaaga 293
           ||||| ||||||||||||||||||
Sbjct: 312 agagaacagtgaggaagatgaaga 335
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 300     tgaagcacaatctgaaagtg 319
               ||||||||||||||||||||
Sbjct: 4434455 tgaagcacaatctgaaagtg 4434436
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>dbj|AP002484.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0489A01
          Length = 137174

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   tgaagcacaatctgaaagtg 319
             ||||||||||||||||||||
Sbjct: 94537 tgaagcacaatctgaaagtg 94518
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>gb|AE016754.1| Mus musculus chromosome 10 high-growth region, section 2 of 2 of the
              complete sequence
          Length = 303688

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 276    cagtgaggaagatgaagaag 295
              ||||||||||||||||||||
Sbjct: 206065 cagtgaggaagatgaagaag 206046
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>emb|BX247878.5| Zebrafish DNA sequence from clone CH211-266O5 in linkage group 7,
             complete sequence
          Length = 190715

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 378   cacaggtgaaaaacgctacaattt 401
             ||||||||||||||| ||||||||
Sbjct: 94816 cacaggtgaaaaacgatacaattt 94839
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>gb|AC159324.2| Mus musculus BAC clone RP23-9D1 from chromosome 12, complete sequence
          Length = 207280

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 423    tgccacagcagcagcccctc 442
              ||||||||||||||||||||
Sbjct: 158805 tgccacagcagcagcccctc 158786


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,556,464
Number of Sequences: 3902068
Number of extensions: 4556464
Number of successful extensions: 103811
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103621
Number of HSP's gapped (non-prelim): 182
length of query: 454
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 432
effective length of database: 17,147,199,772
effective search space: 7407590301504
effective search space used: 7407590301504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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