Clone Name | bah62p07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK071836.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023117P17, full insert sequence Length = 1475 Score = 194 bits (98), Expect = 2e-46 Identities = 294/358 (82%), Gaps = 1/358 (0%) Strand = Plus / Plus Query: 28 gtcatactatgagataacttcgaacgattatctcacgttcataaggaagtacgtaattgg 87 ||||||||| |||||||||||| ||| ||| || ||||||||||||||||| || |||| Sbjct: 879 gtcatactacgagataacttcggacgcttaccttgcgttcataaggaagtacatagttgg 938 Query: 88 gattgggccatggaaggatacaatcattccccccgagaataaccatttaggccctgcaac 147 ||||| |||||||| |||||||| |||| ||| ||||| | |||| || |||| Sbjct: 939 cattggaccatggaaagatacaattgttcctcccataaataattacctaggtcccccaac 998 Query: 148 cgatctcgtggcacgggcacatgctctgaatcttcaggtgcatccatacacattcagaaa 207 |||||| || || || ||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 999 cgatcttgtcgcgcgagcacacgctctgaatcttcaggtgcatccatacactttcagaaa 1058 Query: 208 tgagaacaaattcttgcatttcaacttccatcaagacccttatgctgaatatgagtactg 267 ||||||| |||||||| ||| ||||||| |||||||||||| ||| || ||||| || Sbjct: 1059 cgagaacatgttcttgcacttcgacttccaccaagacccttatcttgagtacgagtattg 1118 Query: 268 ggtcagagagatcggagtcgacgcgctgttcaccgatttcaccggcagcttgcacaagta 327 | || | ||||| || ||||||| ||| ||||| |||||||| || | |||||||| || Sbjct: 1119 gctcggtgagattggcgtcgacgggcttttcactgatttcactggtaccttgcacaggtt 1178 Query: 328 ccaggagtggacaactccacaccaaaagaaggaaaagaaatgcagaggaactcctgca 385 |||||| || |||||||| | | |||||| |||||| |||||||||| |||| |||| Sbjct: 1179 ccaggaatgcacaactccgtatccaaagaatgaaaag-aatgcagaggcactcttgca 1235
>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete sequence Length = 145590 Score = 119 bits (60), Expect = 1e-23 Identities = 169/204 (82%), Gaps = 1/204 (0%) Strand = Plus / Plus Query: 182 caggtgcatccatacacattcagaaatgagaacaaattcttgcatttcaacttccatcaa 241 ||||||||||||||||| |||||||| ||||||| |||||||| ||| ||||||| ||| Sbjct: 22211 caggtgcatccatacactttcagaaacgagaacatgttcttgcacttcgacttccaccaa 22270 Query: 242 gacccttatgctgaatatgagtactgggtcagagagatcggagtcgacgcgctgttcacc 301 ||||||||| ||| || ||||| ||| || | ||||| || ||||||| ||| ||||| Sbjct: 22271 gacccttatcttgagtacgagtattggctcggtgagattggcgtcgacgggcttttcact 22330 Query: 302 gatttcaccggcagcttgcacaagtaccaggagtggacaactccacaccaaaagaaggaa 361 |||||||| || | |||||||| || |||||| || |||||||| | | |||||| ||| Sbjct: 22331 gatttcactggtaccttgcacaggttccaggaatgcacaactccgtatccaaagaatgaa 22390 Query: 362 aagaaatgcagaggaactcctgca 385 ||| |||||||||| |||| |||| Sbjct: 22391 aag-aatgcagaggcactcttgca 22413 Score = 85.7 bits (43), Expect = 2e-13 Identities = 130/159 (81%) Strand = Plus / Plus Query: 28 gtcatactatgagataacttcgaacgattatctcacgttcataaggaagtacgtaattgg 87 ||||||||| |||||||||||| ||| ||| || ||||||||||||||||| || |||| Sbjct: 21930 gtcatactacgagataacttcggacgcttaccttgcgttcataaggaagtacatagttgg 21989 Query: 88 gattgggccatggaaggatacaatcattccccccgagaataaccatttaggccctgcaac 147 ||||| |||||||| |||||||| |||| ||| ||||| | |||| || |||| Sbjct: 21990 cattggaccatggaaagatacaattgttcctcccataaataattacctaggtcccccaac 22049 Query: 148 cgatctcgtggcacgggcacatgctctgaatcttcaggt 186 |||||| || || || ||||| ||||||||||||||||| Sbjct: 22050 cgatcttgtcgcgcgagcacacgctctgaatcttcaggt 22088
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 119 bits (60), Expect = 1e-23 Identities = 169/204 (82%), Gaps = 1/204 (0%) Strand = Plus / Plus Query: 182 caggtgcatccatacacattcagaaatgagaacaaattcttgcatttcaacttccatcaa 241 ||||||||||||||||| |||||||| ||||||| |||||||| ||| ||||||| ||| Sbjct: 22426964 caggtgcatccatacactttcagaaacgagaacatgttcttgcacttcgacttccaccaa 22427023 Query: 242 gacccttatgctgaatatgagtactgggtcagagagatcggagtcgacgcgctgttcacc 301 ||||||||| ||| || ||||| ||| || | ||||| || ||||||| ||| ||||| Sbjct: 22427024 gacccttatcttgagtacgagtattggctcggtgagattggcgtcgacgggcttttcact 22427083 Query: 302 gatttcaccggcagcttgcacaagtaccaggagtggacaactccacaccaaaagaaggaa 361 |||||||| || | |||||||| || |||||| || |||||||| | | |||||| ||| Sbjct: 22427084 gatttcactggtaccttgcacaggttccaggaatgcacaactccgtatccaaagaatgaa 22427143 Query: 362 aagaaatgcagaggaactcctgca 385 ||| |||||||||| |||| |||| Sbjct: 22427144 aag-aatgcagaggcactcttgca 22427166 Score = 85.7 bits (43), Expect = 2e-13 Identities = 130/159 (81%) Strand = Plus / Plus Query: 28 gtcatactatgagataacttcgaacgattatctcacgttcataaggaagtacgtaattgg 87 ||||||||| |||||||||||| ||| ||| || ||||||||||||||||| || |||| Sbjct: 22426683 gtcatactacgagataacttcggacgcttaccttgcgttcataaggaagtacatagttgg 22426742 Query: 88 gattgggccatggaaggatacaatcattccccccgagaataaccatttaggccctgcaac 147 ||||| |||||||| |||||||| |||| ||| ||||| | |||| || |||| Sbjct: 22426743 cattggaccatggaaagatacaattgttcctcccataaataattacctaggtcccccaac 22426802 Query: 148 cgatctcgtggcacgggcacatgctctgaatcttcaggt 186 |||||| || || || ||||| ||||||||||||||||| Sbjct: 22426803 cgatcttgtcgcgcgagcacacgctctgaatcttcaggt 22426841
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 119 bits (60), Expect = 1e-23 Identities = 169/204 (82%), Gaps = 1/204 (0%) Strand = Plus / Plus Query: 182 caggtgcatccatacacattcagaaatgagaacaaattcttgcatttcaacttccatcaa 241 ||||||||||||||||| |||||||| ||||||| |||||||| ||| ||||||| ||| Sbjct: 22419993 caggtgcatccatacactttcagaaacgagaacatgttcttgcacttcgacttccaccaa 22420052 Query: 242 gacccttatgctgaatatgagtactgggtcagagagatcggagtcgacgcgctgttcacc 301 ||||||||| ||| || ||||| ||| || | ||||| || ||||||| ||| ||||| Sbjct: 22420053 gacccttatcttgagtacgagtattggctcggtgagattggcgtcgacgggcttttcact 22420112 Query: 302 gatttcaccggcagcttgcacaagtaccaggagtggacaactccacaccaaaagaaggaa 361 |||||||| || | |||||||| || |||||| || |||||||| | | |||||| ||| Sbjct: 22420113 gatttcactggtaccttgcacaggttccaggaatgcacaactccgtatccaaagaatgaa 22420172 Query: 362 aagaaatgcagaggaactcctgca 385 ||| |||||||||| |||| |||| Sbjct: 22420173 aag-aatgcagaggcactcttgca 22420195 Score = 85.7 bits (43), Expect = 2e-13 Identities = 130/159 (81%) Strand = Plus / Plus Query: 28 gtcatactatgagataacttcgaacgattatctcacgttcataaggaagtacgtaattgg 87 ||||||||| |||||||||||| ||| ||| || ||||||||||||||||| || |||| Sbjct: 22419712 gtcatactacgagataacttcggacgcttaccttgcgttcataaggaagtacatagttgg 22419771 Query: 88 gattgggccatggaaggatacaatcattccccccgagaataaccatttaggccctgcaac 147 ||||| |||||||| |||||||| |||| ||| ||||| | |||| || |||| Sbjct: 22419772 cattggaccatggaaagatacaattgttcctcccataaataattacctaggtcccccaac 22419831 Query: 148 cgatctcgtggcacgggcacatgctctgaatcttcaggt 186 |||||| || || || ||||| ||||||||||||||||| Sbjct: 22419832 cgatcttgtcgcgcgagcacacgctctgaatcttcaggt 22419870
>ref|NM_191352.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1176 Score = 83.8 bits (42), Expect = 6e-13 Identities = 84/98 (85%) Strand = Plus / Plus Query: 164 gcacatgctctgaatcttcaggtgcatccatacacattcagaaatgagaacaaattcttg 223 |||||||||| ||||||||||| || || ||||||| ||| || |||||| ||||| || Sbjct: 919 gcacatgctcataatcttcaggtacacccgtacacatacaggaacgagaaccaattcctg 978 Query: 224 catttcaacttccatcaagacccttatgctgaatatga 261 || ||||||||||||| |||||||||||||| ||||| Sbjct: 979 cacctcaacttccatcaggacccttatgctgagtatga 1016
>dbj|AK066596.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070K24, full insert sequence Length = 1618 Score = 83.8 bits (42), Expect = 6e-13 Identities = 84/98 (85%) Strand = Plus / Plus Query: 164 gcacatgctctgaatcttcaggtgcatccatacacattcagaaatgagaacaaattcttg 223 |||||||||| ||||||||||| || || ||||||| ||| || |||||| ||||| || Sbjct: 1106 gcacatgctcataatcttcaggtacacccgtacacatacaggaacgagaaccaattcctg 1165 Query: 224 catttcaacttccatcaagacccttatgctgaatatga 261 || ||||||||||||| |||||||||||||| ||||| Sbjct: 1166 cacctcaacttccatcaggacccttatgctgagtatga 1203
>dbj|AK061563.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-E04, full insert sequence Length = 1400 Score = 83.8 bits (42), Expect = 6e-13 Identities = 84/98 (85%) Strand = Plus / Plus Query: 164 gcacatgctctgaatcttcaggtgcatccatacacattcagaaatgagaacaaattcttg 223 |||||||||| ||||||||||| || || ||||||| ||| || |||||| ||||| || Sbjct: 1062 gcacatgctcataatcttcaggtacacccgtacacatacaggaacgagaaccaattcctg 1121 Query: 224 catttcaacttccatcaagacccttatgctgaatatga 261 || ||||||||||||| |||||||||||||| ||||| Sbjct: 1122 cacctcaacttccatcaggacccttatgctgagtatga 1159
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 194 tacacattcagaaatgagaacaaattcttgcatttcaacttccatcaagacccttatgct 253 ||||||| ||| || |||||| ||||| |||| ||||||||||||| |||||||||||| Sbjct: 32129768 tacacatacaggaacgagaaccaattcctgcacctcaacttccatcaggacccttatgct 32129827 Query: 254 gaatatga 261 || ||||| Sbjct: 32129828 gagtatga 32129835
>dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0512C01 Length = 176261 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 194 tacacattcagaaatgagaacaaattcttgcatttcaacttccatcaagacccttatgct 253 ||||||| ||| || |||||| ||||| |||| ||||||||||||| |||||||||||| Sbjct: 171582 tacacatacaggaacgagaaccaattcctgcacctcaacttccatcaggacccttatgct 171641 Query: 254 gaatatga 261 || ||||| Sbjct: 171642 gagtatga 171649
>dbj|AP003239.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0403C05 Length = 151085 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 194 tacacattcagaaatgagaacaaattcttgcatttcaacttccatcaagacccttatgct 253 ||||||| ||| || |||||| ||||| |||| ||||||||||||| |||||||||||| Sbjct: 521 tacacatacaggaacgagaaccaattcctgcacctcaacttccatcaggacccttatgct 580 Query: 254 gaatatga 261 || ||||| Sbjct: 581 gagtatga 588
>gb|AY104313.1| Zea mays PCO093744 mRNA sequence Length = 1823 Score = 60.0 bits (30), Expect = 9e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 149 gatctcgtggcacgggcacatgctctgaatcttcaggtgcatccatacacattcagaaat 208 ||||| || |||||||||||||||| ||||| ||||| ||||||||||| | ||| || Sbjct: 1122 gatcttgtcgcacgggcacatgctcataatctccaggtacatccatacacgtacaggaac 1181 Query: 209 gagaacaaattcttgcatttcaactt 234 |||||| | ||| |||| |||||||| Sbjct: 1182 gagaaccagttcctgcacttcaactt 1207
>ref|NM_120885.2| Arabidopsis thaliana glycerophosphodiester phosphodiesterase AT5G08030 mRNA, complete cds Length = 1238 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 176 aatcttcaggtgcatccatacacattcagaaatgagaac 214 ||||||||||| ||||||||||||| | | ||||||||| Sbjct: 931 aatcttcaggtccatccatacacataccgtaatgagaac 969 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 80 gtaattgggattgggccatggaaggatacaat 111 |||||||||||||| |||||||| || ||||| Sbjct: 835 gtaattgggattggtccatggaaagacacaat 866
>gb|AC093136.3| Pan troglodytes clone RP43-116L11, complete sequence Length = 179629 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 464 ctatttcattattgttagtacggagaaaatg 494 ||||||||||||||| ||||| ||||||||| Sbjct: 153697 ctatttcattattgtcagtacagagaaaatg 153727
>gb|AC005077.5| Homo sapiens BAC clone CTA-228D17 from 7, complete sequence Length = 240379 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 464 ctatttcattattgttagtacggagaaaatg 494 ||||||||||||||| ||||| ||||||||| Sbjct: 186838 ctatttcattattgtcagtacagagaaaatg 186808
>gb|BT023450.1| Arabidopsis thaliana At5g08030 gene, complete cds Length = 1225 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 176 aatcttcaggtgcatccatacacattcagaaatgagaac 214 ||||||||||| ||||||||||||| | | ||||||||| Sbjct: 942 aatcttcaggtccatccatacacataccgtaatgagaac 980 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 80 gtaattgggattgggccatggaaggatacaat 111 |||||||||||||| |||||||| || ||||| Sbjct: 846 gtaattgggattggtccatggaaagacacaat 877
>gb|AC145375.5| Pan troglodytes BAC clone RP43-57M5 from chromosome 7, complete sequence Length = 217260 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 464 ctatttcattattgttagtacggagaaaatg 494 ||||||||||||||| ||||| ||||||||| Sbjct: 157562 ctatttcattattgtcagtacagagaaaatg 157532
>gb|AC146373.5| Pan troglodytes BAC clone RP43-60G24 from 7, complete sequence Length = 151517 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Plus Query: 465 tatttcattattgttagtacggagaaaatg 494 |||||||||||||| ||||| ||||||||| Sbjct: 28160 tatttcattattgtcagtacagagaaaatg 28189
>gb|AC079355.6| Homo sapiens BAC clone CTD-2526L21 from 7, complete sequence Length = 140241 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 465 tatttcattattgttagtacggagaaaatg 494 |||||||||||||| ||||| ||||||||| Sbjct: 115002 tatttcattattgtcagtacagagaaaatg 114973
>gb|AC118758.3| Homo sapiens BAC clone RP13-580B18 from 7, complete sequence Length = 150813 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Plus Query: 465 tatttcattattgttagtacggagaaaatg 494 |||||||||||||| ||||| ||||||||| Sbjct: 23599 tatttcattattgtcagtacagagaaaatg 23628
>emb|AL354794.16| Human DNA sequence from clone RP11-203L2 on chromosome 9q21.11-21.2 Contains the 5' end of the PIP5K1B gene for phosphatidylinositol-4-phosphate 5-kinase, type I, beta (MSS4, STM7), a novel gene (MGC17374), a adaptor-related protein complex 3, mu 2 subunit (P47B, AP47B, CLA20) (AP3M2) pseudogene, the 3' end of a novel gene and 2 CpG islands, complete sequence Length = 154071 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Plus Query: 351 aaaagaaggaaaagaaatgcagaggaactc 380 ||||||| ||||||||||||||| |||||| Sbjct: 29586 aaaagaaagaaaagaaatgcagatgaactc 29615
>gb|AC159986.4| Pan troglodytes BAC clone CH251-6M11 from chromosome 7, complete sequence Length = 165482 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 465 tatttcattattgttagtacggagaaaatg 494 |||||||||||||| ||||| ||||||||| Sbjct: 75958 tatttcattattgtcagtacagagaaaatg 75929
>emb|CR388054.11| Zebrafish DNA sequence from clone CH211-82E18 in linkage group 1, complete sequence Length = 162569 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 aattgggattgggccatggaa 102 ||||||||||||||||||||| Sbjct: 120419 aattgggattgggccatggaa 120439
>gb|AC125360.4| Mus musculus BAC clone RP23-58E21 from 12, complete sequence Length = 170040 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 351 aaaagaaggaaaagaaatgcagagg 375 |||||||| |||||||||||||||| Sbjct: 38308 aaaagaagtaaaagaaatgcagagg 38284
>emb|BX284697.8| Zebrafish DNA sequence from clone DKEY-7M11 in linkage group 1, complete sequence Length = 209946 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 aattgggattgggccatggaa 102 ||||||||||||||||||||| Sbjct: 131042 aattgggattgggccatggaa 131022
>emb|BX005350.6| Zebrafish DNA sequence from clone DKEY-58C8 in linkage group 1, complete sequence Length = 195436 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 aattgggattgggccatggaa 102 ||||||||||||||||||||| Sbjct: 82162 aattgggattgggccatggaa 82142
>emb|Z17220.1|CGPERAF1 C.griseus mRNA for peroxisome assembly factor 1 Length = 1244 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 ttccaactcaagataccaacc 27 ||||||||||||||||||||| Sbjct: 267 ttccaactcaagataccaacc 287
>dbj|D30618.1|HAMPAF1C Cricetulus griseus PAF-1 mRNA for peroxisome assembly factor-1, complete cds Length = 945 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 ttccaactcaagataccaacc 27 ||||||||||||||||||||| Sbjct: 267 ttccaactcaagataccaacc 287
>dbj|AP000485.5| Homo sapiens genomic DNA, chromosome 11, clone:CMB9-21L24, complete sequence Length = 139072 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 501 ttaatactagtactattctat 521 ||||||||||||||||||||| Sbjct: 50141 ttaatactagtactattctat 50121
>dbj|AP001157.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-658F2, complete sequence Length = 200458 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 501 ttaatactagtactattctat 521 ||||||||||||||||||||| Sbjct: 195519 ttaatactagtactattctat 195499
>gb|AY510455.1| Aspergillus flavus isolate AF36 aflatoxin biosynthesis gene cluster, complete sequence Length = 78264 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ccgatttcaccggcagcttg 319 |||||||||||||||||||| Sbjct: 21841 ccgatttcaccggcagcttg 21822
>ref|NM_111863.1| Arabidopsis thaliana acyltransferase AT3G10280 mRNA, complete cds Length = 1380 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 472 ttattgttagtacggagaaaatga 495 ||||||||||||||||||| |||| Sbjct: 635 ttattgttagtacggagaacatga 658
>ref|NM_130237.2| Arabidopsis thaliana HIC (HIGH CARBON DIOXIDE); acyltransferase AT2G46720 (HIC) mRNA, complete cds Length = 2839 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 472 ttattgttagtacggagaaaatga 495 ||||||||||||||||||| |||| Sbjct: 2094 ttattgttagtacggagaacatga 2117
>gb|AY510451.1| Aspergillus flavus isolate AF13 aflatoxin biosynthesis gene cluster, complete sequence Length = 88318 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ccgatttcaccggcagcttg 319 |||||||||||||||||||| Sbjct: 30572 ccgatttcaccggcagcttg 30553
>gb|AY510453.1| Aspergillus flavus isolate AF70 aflatoxin biosynthesis gene cluster, complete sequence Length = 75829 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ccgatttcaccggcagcttg 319 |||||||||||||||||||| Sbjct: 22172 ccgatttcaccggcagcttg 22153
>gb|AC136091.2| Rattus norvegicus 18 BAC CH230-329A5 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 189650 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 tctatgtaattgcttcctag 536 |||||||||||||||||||| Sbjct: 59129 tctatgtaattgcttcctag 59110
>gb|L48183.3|ASNFAS1A Aspergillus parasiticus fatty acid synthetase (fas-1a) gene Length = 13217 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ccgatttcaccggcagcttg 319 |||||||||||||||||||| Sbjct: 3412 ccgatttcaccggcagcttg 3393
>gb|AY371490.1| Aspergillus parasiticus aflatoxin pathway gene cluster, complete sequence Length = 82081 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ccgatttcaccggcagcttg 319 |||||||||||||||||||| Sbjct: 22577 ccgatttcaccggcagcttg 22558
>gb|AY539897.1| Rattus norvegicus LRRGT00146 mRNA, complete cds Length = 1335 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 gaggaactcctgcatgagat 391 |||||||||||||||||||| Sbjct: 207 gaggaactcctgcatgagat 188
>gb|AC139360.8| Mus musculus chromosome 3, clone RP23-324F4, complete sequence Length = 186836 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 aaggaaaagaaatgcagagg 375 |||||||||||||||||||| Sbjct: 94794 aaggaaaagaaatgcagagg 94813
>emb|BX323815.12| Zebrafish DNA sequence from clone DKEY-148J13 in linkage group 14, complete sequence Length = 73527 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 aattgggattgggccatgga 101 |||||||||||||||||||| Sbjct: 34714 aattgggattgggccatgga 34695
>gb|AC129592.5| Mus musculus BAC clone RP24-86A6 from chromosome 3, complete sequence Length = 186218 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 agaaggaaaagaaatgcaga 373 |||||||||||||||||||| Sbjct: 61833 agaaggaaaagaaatgcaga 61814
>gb|AC131769.3| Mus musculus BAC clone RP24-290G2 from chromosome 3, complete sequence Length = 148675 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 351 aaaagaaggaaaagaaatgcagag 374 |||||||||||| ||||||||||| Sbjct: 47787 aaaagaaggaaatgaaatgcagag 47810
>gb|AC114000.5| Mus musculus BAC clone RP23-161K1 from chromosome 14, complete sequence Length = 212322 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 536 gaaatcacgggaagtgccaactgt 559 |||||||||| ||||||||||||| Sbjct: 105049 gaaatcacggaaagtgccaactgt 105072
>gb|AC009400.4|ATAC009400 Arabidopsis thaliana chromosome III BAC F14P13 genomic sequence, complete sequence Length = 87937 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 472 ttattgttagtacggagaaaatga 495 ||||||||||||||||||| |||| Sbjct: 49923 ttattgttagtacggagaacatga 49900
>gb|AC126460.4| Mus musculus BAC clone RP23-187E3 from 3, complete sequence Length = 192918 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 aaggaaaagaaatgcagagg 375 |||||||||||||||||||| Sbjct: 105391 aaggaaaagaaatgcagagg 105410
>gb|AC087062.25| Mus musculus strain C57BL/6J clone rp23-15p14 map 3, complete sequence Length = 224451 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 351 aaaagaaggaaaagaaatgcagag 374 |||||||||||| ||||||||||| Sbjct: 221957 aaaagaaggaaatgaaatgcagag 221980
>emb|AL357354.10| Human DNA sequence from clone RP11-465C5 on chromosome Xq21.2-22.1 Contains a phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase (PAICS) pseudogene, complete sequence Length = 194612 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 tatacctcctcccttttgga 462 |||||||||||||||||||| Sbjct: 143275 tatacctcctcccttttgga 143256
>emb|AL162412.11| Human DNA sequence from clone RP11-109D9 on chromosome 9 Contains the 5' end of the APBA1 gene for myloid beta (A4) precursor protein-binding, family A, member 1 (X11), two novel genes, the 5' end of a novel gene possible ortholog of mouse RIKEN cDNA 1700028P14 gene and two CpG islands, complete sequence Length = 189277 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tccacaccaaaagaaggaaa 362 |||||||||||||||||||| Sbjct: 103467 tccacaccaaaagaaggaaa 103448
>emb|AL022725.8|HS430A16 Human DNA sequence from clone RP3-430A16 on chromosome 6p24.1-25.3 Contains part of the CDYL gene for Y chromosome-like chromodomain protein and a CpG island, complete sequence Length = 129756 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 514 tattctatgtaattgcttcc 533 |||||||||||||||||||| Sbjct: 47626 tattctatgtaattgcttcc 47607
>gb|AC142454.4| Mus musculus BAC clone RP23-313G1 from chromosome 3, complete sequence Length = 183223 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 aaggaaaagaaatgcagagg 375 |||||||||||||||||||| Sbjct: 94792 aaggaaaagaaatgcagagg 94811
>emb|AL357612.1|ATT22D6 Arabidopsis thaliana DNA chromosome 5, BAC clone T22D6 (ESSA project) Length = 89988 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 80 gtaattgggattgggccatggaaggatacaat 111 |||||||||||||| |||||||| || ||||| Sbjct: 2199 gtaattgggattggtccatggaaagacacaat 2168
>emb|AL133421.1|ATF13G24 Arabidopsis thaliana DNA chromosome 5, BAC clone F13G24 (ESSA project) Length = 88095 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 80 gtaattgggattgggccatggaaggatacaat 111 |||||||||||||| |||||||| || ||||| Sbjct: 82441 gtaattgggattggtccatggaaagacacaat 82410
>emb|BX323793.10| Zebrafish DNA sequence from clone DKEY-185P18 in linkage group 16, complete sequence Length = 170199 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 200 ttcagaaatgagaacaaattcttgcatttcaa 231 ||||||||| |||| || |||||||||||||| Sbjct: 74519 ttcagaaataagaataagttcttgcatttcaa 74550
>dbj|AB196490.1| Aspergillus oryzae DNA, aflatoxin biosynthesis gene cluster, complete sequence, strain: RIB40 Length = 89641 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ccgatttcaccggcagcttg 319 |||||||||||||||||||| Sbjct: 31906 ccgatttcaccggcagcttg 31887
>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 Length = 2324132 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ccgatttcaccggcagcttg 319 |||||||||||||||||||| Sbjct: 38401 ccgatttcaccggcagcttg 38382
>gb|AC005819.3| Arabidopsis thaliana chromosome 2 clone T3A4 map CIC06C03, complete sequence Length = 55870 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 472 ttattgttagtacggagaaaatga 495 ||||||||||||||||||| |||| Sbjct: 54039 ttattgttagtacggagaacatga 54062
>gb|AF391094.1| Aspergillus parasiticus fatty acid synthase alpha subunit and fatty acid synthase beta subunit genes, complete cds Length = 13144 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ccgatttcaccggcagcttg 319 |||||||||||||||||||| Sbjct: 3412 ccgatttcaccggcagcttg 3393
>gb|AC008650.8| Homo sapiens chromosome 5 clone CTB-186M2, complete sequence Length = 139226 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 tatacctcctcccttttgga 462 |||||||||||||||||||| Sbjct: 84035 tatacctcctcccttttgga 84054
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 gcgctgttcaccgatttcac 309 |||||||||||||||||||| Sbjct: 270306 gcgctgttcaccgatttcac 270325
>gb|AC084272.41| Mus musculus strain C57BL/6J clone rp23-11g21 map 3, complete sequence Length = 206230 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 351 aaaagaaggaaaagaaatgcagag 374 |||||||||||| ||||||||||| Sbjct: 62797 aaaagaaggaaatgaaatgcagag 62820
>emb|BX830013.1|CNS0A1JL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB53ZA12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1225 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 80 gtaattgggattgggccatggaaggatacaat 111 |||||||||||||| |||||||| || ||||| Sbjct: 847 gtaattgggattggtccatggaaagacacaat 878
>gb|AF188486.1|AF188486 Arabidopsis thaliana putative 3-keto-acyl-CoA synthase (HIC) gene, partial sequence Length = 1584 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 472 ttattgttagtacggagaaaatga 495 ||||||||||||||||||| |||| Sbjct: 661 ttattgttagtacggagaacatga 684
>gb|AF188485.1|AF188485 Arabidopsis thaliana putative 3-keto-acyl-CoA synthase (HIC) gene, complete cds Length = 5600 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 472 ttattgttagtacggagaaaatga 495 ||||||||||||||||||| |||| Sbjct: 2228 ttattgttagtacggagaacatga 2251
>gb|AC009362.8|AC009362 Homo sapiens chromosome 7 clone RP11-256C6, complete sequence Length = 160156 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 tatacctcctcccttttgga 462 |||||||||||||||||||| Sbjct: 106663 tatacctcctcccttttgga 106682
>ref|XM_576237.1| PREDICTED: Rattus norvegicus similar to LRRGT00146 (LOC500846), mRNA Length = 1335 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 gaggaactcctgcatgagat 391 |||||||||||||||||||| Sbjct: 207 gaggaactcctgcatgagat 188
>emb|BX005472.11| Zebrafish DNA sequence from clone CH211-119C22 in linkage group 11, complete sequence Length = 158170 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 aattgggattgggccatgga 101 |||||||||||||||||||| Sbjct: 142183 aattgggattgggccatgga 142164
>gb|AC154235.2| Mus musculus BAC clone RP24-347C11 from 17, complete sequence Length = 214934 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 351 aaaagaaggaaaagaaatgcagag 374 ||||||||||||||||||| |||| Sbjct: 7300 aaaagaaggaaaagaaatgaagag 7277
>emb|CT573084.4| Mouse DNA sequence from clone RP23-226G14 on chromosome 17, complete sequence Length = 221319 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 351 aaaagaaggaaaagaaatgcagag 374 ||||||||||||||||||| |||| Sbjct: 130593 aaaagaaggaaaagaaatgaagag 130616
>dbj|AB061271.2| Zea mays ZmNAS2 mRNA, complete cds Length = 1806 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 gtcgacgcgctgttcaccga 303 |||||||||||||||||||| Sbjct: 934 gtcgacgcgctgttcaccga 953
>gb|U64985.1|APU64985 Anas platyrhynchos serum amyloid A gene, complete cds Length = 1632 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 aaggaaaagaaatgcagagg 375 |||||||||||||||||||| Sbjct: 347 aaggaaaagaaatgcagagg 328
>gb|AC140358.2| Mus musculus BAC clone RP24-234L7 from 3, complete sequence Length = 160295 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 agaaggaaaagaaatgcaga 373 |||||||||||||||||||| Sbjct: 114535 agaaggaaaagaaatgcaga 114516
>emb|AL713897.7| Mouse DNA sequence from clone RP23-373J8 on chromosome X, complete sequence Length = 166240 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 351 aaaagaaggaaaagaaatgcagag 374 ||||||| |||||||||||||||| Sbjct: 142339 aaaagaaagaaaagaaatgcagag 142362
>emb|AL645723.11| Mouse DNA sequence from clone RP23-423N6 on chromosome 4, complete sequence Length = 220638 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 accaaaagaaggaaaagaaa 367 |||||||||||||||||||| Sbjct: 67512 accaaaagaaggaaaagaaa 67531
>gb|K03152.1|PHVLBA Phaseolus vulgaris (kidney bean) leghemoglobin gene, complete cds Length = 933 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 agaaatgagaacaaattctt 222 |||||||||||||||||||| Sbjct: 344 agaaatgagaacaaattctt 325
>dbj|AB004549.1| Phaseolus vulgaris DNA for leghemoglobin, complete cds Length = 717 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 agaaatgagaacaaattctt 222 |||||||||||||||||||| Sbjct: 230 agaaatgagaacaaattctt 211 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,040,996 Number of Sequences: 3902068 Number of extensions: 5040996 Number of successful extensions: 110417 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110152 Number of HSP's gapped (non-prelim): 265 length of query: 587 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 564 effective length of database: 17,143,297,704 effective search space: 9668819905056 effective search space used: 9668819905056 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)