ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah62p03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190853.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2013 Score = 339 bits (171), Expect = 4e-90 Identities = 306/354 (86%) Strand = Plus / Plus Query: 19 agttgangattctgttggnnttggggttgtcaatgcttgngntggacttggtctactgaa 78 |||||| ||||||||||| ||||| ||||||||||||| | || ||||| ||| |||| Sbjct: 1140 agttgaggattctgttgggtttgggattgtcaatgcttgtgttgagcttggcctattgaa 1199 Query: 79 caaggctnatagcatacttgatgaaatgactgctcaaggagcctatgtggggctagctat 138 ||||||| |||| ||||| || |||||||||||||||||||||| ||||||||||| | | Sbjct: 1200 caaggctcatagtatactcgacgaaatgactgctcaaggagcctctgtggggctaggtgt 1259 Query: 139 atactccccaatcttaaaagcatattgcaaggagcagaagactgccgaggctgcacagnt 198 ||||||| ||||| | ||||| |||||||||||||| | |||||| |||||||||||| | Sbjct: 1260 atactcctcaatcctgaaagcgtattgcaaggagcaaaggactgcagaggctgcacagct 1319 Query: 199 tgtggcggngattaacgcagcagggctacagcttgatgctggcagttatgatgctcttat 258 ||| | | ||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1320 tgtctcagagattagtgcagcagggctgcagcttgatgctggcagttatgatgctcttat 1379 Query: 259 tgatgcttccatgacagcccatgatttccagtctgcatttgcacttttcaaagatatgan 318 ||||||||| ||||||||||||||||||| |||||||| | || ||||| || |||| Sbjct: 1380 tgatgcttctatgacagcccatgatttcctatctgcattctctctcttcaaggagatgag 1439 Query: 319 ggaggcaaggctacccgatcttagaacaagctatcttactataatgacaggctt 372 ||||| ||| |||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 1440 agaggcgaggttaccagaccttaggacaagctatcttactataatgacaggctt 1493
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 339 bits (171), Expect = 4e-90 Identities = 306/354 (86%) Strand = Plus / Minus Query: 19 agttgangattctgttggnnttggggttgtcaatgcttgngntggacttggtctactgaa 78 |||||| ||||||||||| ||||| ||||||||||||| | || ||||| ||| |||| Sbjct: 33473461 agttgaggattctgttgggtttgggattgtcaatgcttgtgttgagcttggcctattgaa 33473402 Query: 79 caaggctnatagcatacttgatgaaatgactgctcaaggagcctatgtggggctagctat 138 ||||||| |||| ||||| || |||||||||||||||||||||| ||||||||||| | | Sbjct: 33473401 caaggctcatagtatactcgacgaaatgactgctcaaggagcctctgtggggctaggtgt 33473342 Query: 139 atactccccaatcttaaaagcatattgcaaggagcagaagactgccgaggctgcacagnt 198 ||||||| ||||| | ||||| |||||||||||||| | |||||| |||||||||||| | Sbjct: 33473341 atactcctcaatcctgaaagcgtattgcaaggagcaaaggactgcagaggctgcacagct 33473282 Query: 199 tgtggcggngattaacgcagcagggctacagcttgatgctggcagttatgatgctcttat 258 ||| | | ||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 33473281 tgtctcagagattagtgcagcagggctgcagcttgatgctggcagttatgatgctcttat 33473222 Query: 259 tgatgcttccatgacagcccatgatttccagtctgcatttgcacttttcaaagatatgan 318 ||||||||| ||||||||||||||||||| |||||||| | || ||||| || |||| Sbjct: 33473221 tgatgcttctatgacagcccatgatttcctatctgcattctctctcttcaaggagatgag 33473162 Query: 319 ggaggcaaggctacccgatcttagaacaagctatcttactataatgacaggctt 372 ||||| ||| |||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 33473161 agaggcgaggttaccagaccttaggacaagctatcttactataatgacaggctt 33473108
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 339 bits (171), Expect = 4e-90 Identities = 306/354 (86%) Strand = Plus / Minus Query: 19 agttgangattctgttggnnttggggttgtcaatgcttgngntggacttggtctactgaa 78 |||||| ||||||||||| ||||| ||||||||||||| | || ||||| ||| |||| Sbjct: 18658 agttgaggattctgttgggtttgggattgtcaatgcttgtgttgagcttggcctattgaa 18599 Query: 79 caaggctnatagcatacttgatgaaatgactgctcaaggagcctatgtggggctagctat 138 ||||||| |||| ||||| || |||||||||||||||||||||| ||||||||||| | | Sbjct: 18598 caaggctcatagtatactcgacgaaatgactgctcaaggagcctctgtggggctaggtgt 18539 Query: 139 atactccccaatcttaaaagcatattgcaaggagcagaagactgccgaggctgcacagnt 198 ||||||| ||||| | ||||| |||||||||||||| | |||||| |||||||||||| | Sbjct: 18538 atactcctcaatcctgaaagcgtattgcaaggagcaaaggactgcagaggctgcacagct 18479 Query: 199 tgtggcggngattaacgcagcagggctacagcttgatgctggcagttatgatgctcttat 258 ||| | | ||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 18478 tgtctcagagattagtgcagcagggctgcagcttgatgctggcagttatgatgctcttat 18419 Query: 259 tgatgcttccatgacagcccatgatttccagtctgcatttgcacttttcaaagatatgan 318 ||||||||| ||||||||||||||||||| |||||||| | || ||||| || |||| Sbjct: 18418 tgatgcttctatgacagcccatgatttcctatctgcattctctctcttcaaggagatgag 18359 Query: 319 ggaggcaaggctacccgatcttagaacaagctatcttactataatgacaggctt 372 ||||| ||| |||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 18358 agaggcgaggttaccagaccttaggacaagctatcttactataatgacaggctt 18305
>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0415A04 Length = 160669 Score = 339 bits (171), Expect = 4e-90 Identities = 306/354 (86%) Strand = Plus / Minus Query: 19 agttgangattctgttggnnttggggttgtcaatgcttgngntggacttggtctactgaa 78 |||||| ||||||||||| ||||| ||||||||||||| | || ||||| ||| |||| Sbjct: 149627 agttgaggattctgttgggtttgggattgtcaatgcttgtgttgagcttggcctattgaa 149568 Query: 79 caaggctnatagcatacttgatgaaatgactgctcaaggagcctatgtggggctagctat 138 ||||||| |||| ||||| || |||||||||||||||||||||| ||||||||||| | | Sbjct: 149567 caaggctcatagtatactcgacgaaatgactgctcaaggagcctctgtggggctaggtgt 149508 Query: 139 atactccccaatcttaaaagcatattgcaaggagcagaagactgccgaggctgcacagnt 198 ||||||| ||||| | ||||| |||||||||||||| | |||||| |||||||||||| | Sbjct: 149507 atactcctcaatcctgaaagcgtattgcaaggagcaaaggactgcagaggctgcacagct 149448 Query: 199 tgtggcggngattaacgcagcagggctacagcttgatgctggcagttatgatgctcttat 258 ||| | | ||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 149447 tgtctcagagattagtgcagcagggctgcagcttgatgctggcagttatgatgctcttat 149388 Query: 259 tgatgcttccatgacagcccatgatttccagtctgcatttgcacttttcaaagatatgan 318 ||||||||| ||||||||||||||||||| |||||||| | || ||||| || |||| Sbjct: 149387 tgatgcttctatgacagcccatgatttcctatctgcattctctctcttcaaggagatgag 149328 Query: 319 ggaggcaaggctacccgatcttagaacaagctatcttactataatgacaggctt 372 ||||| ||| |||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 149327 agaggcgaggttaccagaccttaggacaagctatcttactataatgacaggctt 149274
>dbj|AK073287.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028L06, full insert sequence Length = 1903 Score = 339 bits (171), Expect = 4e-90 Identities = 306/354 (86%) Strand = Plus / Plus Query: 19 agttgangattctgttggnnttggggttgtcaatgcttgngntggacttggtctactgaa 78 |||||| ||||||||||| ||||| ||||||||||||| | || ||||| ||| |||| Sbjct: 722 agttgaggattctgttgggtttgggattgtcaatgcttgtgttgagcttggcctattgaa 781 Query: 79 caaggctnatagcatacttgatgaaatgactgctcaaggagcctatgtggggctagctat 138 ||||||| |||| ||||| || |||||||||||||||||||||| ||||||||||| | | Sbjct: 782 caaggctcatagtatactcgacgaaatgactgctcaaggagcctctgtggggctaggtgt 841 Query: 139 atactccccaatcttaaaagcatattgcaaggagcagaagactgccgaggctgcacagnt 198 ||||||| ||||| | ||||| |||||||||||||| | |||||| |||||||||||| | Sbjct: 842 atactcctcaatcctgaaagcgtattgcaaggagcaaaggactgcagaggctgcacagct 901 Query: 199 tgtggcggngattaacgcagcagggctacagcttgatgctggcagttatgatgctcttat 258 ||| | | ||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 902 tgtctcagagattagtgcagcagggctgcagcttgatgctggcagttatgatgctcttat 961 Query: 259 tgatgcttccatgacagcccatgatttccagtctgcatttgcacttttcaaagatatgan 318 ||||||||| ||||||||||||||||||| |||||||| | || ||||| || |||| Sbjct: 962 tgatgcttctatgacagcccatgatttcctatctgcattctctctcttcaaggagatgag 1021 Query: 319 ggaggcaaggctacccgatcttagaacaagctatcttactataatgacaggctt 372 ||||| ||| |||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 1022 agaggcgaggttaccagaccttaggacaagctatcttactataatgacaggctt 1075
>dbj|AK105428.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D06, full insert sequence Length = 2359 Score = 331 bits (167), Expect = 9e-88 Identities = 305/354 (86%) Strand = Plus / Plus Query: 19 agttgangattctgttggnnttggggttgtcaatgcttgngntggacttggtctactgaa 78 |||||| ||||||||||| ||||| ||||||||||||| | || ||||| ||| |||| Sbjct: 1141 agttgaggattctgttgggtttgggattgtcaatgcttgtgttgagcttggcctattgaa 1200 Query: 79 caaggctnatagcatacttgatgaaatgactgctcaaggagcctatgtggggctagctat 138 ||||||| |||| ||||| || |||||||||||||||||||||| ||||||||||| | | Sbjct: 1201 caaggctcatagtatactcgacgaaatgactgctcaaggagcctctgtggggctaggtgt 1260 Query: 139 atactccccaatcttaaaagcatattgcaaggagcagaagactgccgaggctgcacagnt 198 ||||||| ||||| | ||||| |||||||||||||| | |||||| |||||||||||| | Sbjct: 1261 atactcctcaatcctgaaagcgtattgcaaggagcaaaggactgcagaggctgcacagct 1320 Query: 199 tgtggcggngattaacgcagcagggctacagcttgatgctggcagttatgatgctcttat 258 ||| | | ||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1321 tgtctcagagattagtgcagcagggctgcagcttgatgctggcagttatgatgctcttat 1380 Query: 259 tgatgcttccatgacagcccatgatttccagtctgcatttgcacttttcaaagatatgan 318 ||||||||| |||||||| |||||||||| |||||||| | || ||||| || |||| Sbjct: 1381 tgatgcttctatgacagcacatgatttcctatctgcattctctctcttcaaggagatgag 1440 Query: 319 ggaggcaaggctacccgatcttagaacaagctatcttactataatgacaggctt 372 ||||| ||| |||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 1441 agaggcgaggttaccagaccttaggacaagctatcttactataatgacaggctt 1494
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 atatactccccaatcttaaaa 157 ||||||||||||||||||||| Sbjct: 4472646 atatactccccaatcttaaaa 4472626
>dbj|AP005913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0005A05 Length = 162520 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 atatactccccaatcttaaaa 157 ||||||||||||||||||||| Sbjct: 67376 atatactccccaatcttaaaa 67356
>dbj|AP003508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0470C02 Length = 158849 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 atatactccccaatcttaaaa 157 ||||||||||||||||||||| Sbjct: 120327 atatactccccaatcttaaaa 120307
>gb|AC090060.15| Homo sapiens 12q BAC RP11-84H15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159135 Score = 40.1 bits (20), Expect = 5.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 83 gctnatagcatacttgatgaaat 105 ||| ||||||||||||||||||| Sbjct: 146804 gctgatagcatacttgatgaaat 146782
>gb|AC129337.4| Mus musculus BAC clone RP23-123I14 from 1, complete sequence Length = 184705 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 gctcttattgatgcttccat 270 |||||||||||||||||||| Sbjct: 49014 gctcttattgatgcttccat 48995
>gb|AC109213.6| Mus musculus chromosome 16, clone RP23-345L20, complete sequence Length = 244558 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 caaggagcctatgtggggct 132 |||||||||||||||||||| Sbjct: 162033 caaggagcctatgtggggct 162014
>emb|CR391913.7| Zebrafish DNA sequence from clone DKEY-118P6 in linkage group 5, complete sequence Length = 190731 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 gcatttgcacttttcaaaga 312 |||||||||||||||||||| Sbjct: 25258 gcatttgcacttttcaaaga 25277
>gb|AC020688.7| Homo sapiens chromosome 8, clone RP11-255B23, complete sequence Length = 198958 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 agctatatactccccaatct 152 |||||||||||||||||||| Sbjct: 71584 agctatatactccccaatct 71565
>emb|BX255951.13| Zebrafish DNA sequence from clone DKEYP-31E5 in linkage group 5, complete sequence Length = 171425 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 gcatttgcacttttcaaaga 312 |||||||||||||||||||| Sbjct: 146261 gcatttgcacttttcaaaga 146280
>emb|CR381623.33| Zebrafish DNA sequence from clone DKEY-276G15 in linkage group 1, complete sequence Length = 159400 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 atttccagtctgcatttgca 301 |||||||||||||||||||| Sbjct: 25852 atttccagtctgcatttgca 25871
>gb|BC089975.1| Rattus norvegicus forkhead box B1, mRNA (cDNA clone MGC:109378 IMAGE:7316995), complete cds Length = 1696 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 gagcagaagactgccgaggctgca 193 ||||||||| |||||||||||||| Sbjct: 1131 gagcagaagcctgccgaggctgca 1154
>ref|NM_001013248.1| Rattus norvegicus forkhead box B1 (Foxb1), mRNA Length = 1696 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 gagcagaagactgccgaggctgca 193 ||||||||| |||||||||||||| Sbjct: 1131 gagcagaagcctgccgaggctgca 1154 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,418,882 Number of Sequences: 3902068 Number of extensions: 2418882 Number of successful extensions: 60883 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60830 Number of HSP's gapped (non-prelim): 53 length of query: 372 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 350 effective length of database: 17,147,199,772 effective search space: 6001519920200 effective search space used: 6001519920200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
