ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63e06 |
|---|---|
| Clone Library Name | barley_pub |
>SPS_ORYSA (Q43802) Sucrose-phosphate synthase (EC 2.4.1.14)| (UDP-glucose-fructose-phosphate glucosyltransferase) Length = 1049 Score = 35.0 bits (79), Expect = 0.22 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 13/103 (12%) Frame = +1 Query: 295 DITIMSVGSEITY--------GEAMVPDDGWEEYLNNKWD----KNIVLEETAKFSELKL 438 D I GSE+ Y + PD + ++N++W K + S + Sbjct: 847 DALICGSGSEVYYPGTAQCVDAGGLRPDQDYLLHINHRWSHDGAKQTIANVAHDGSGTNV 906 Query: 439 QPDTEQ-RPHKVSFLVDKKNAQGVIKSLSDKFEKRGVDAKIIY 564 +PD E PH VSF + N + ++ RG+ ++Y Sbjct: 907 EPDVESCNPHCVSFFIKDPNKVRTADEMRERMRMRGLRCHLMY 949
>VILI_DICDI (P36418) Protovillin (100 kDa actin-binding protein)| Length = 959 Score = 32.0 bits (71), Expect = 1.9 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 2/96 (2%) Frame = +1 Query: 277 KPMLTPDITIMSVGSEITYGEAMVPDDGWEEYLNNKWDKNIVLEE--TAKFSELKLQPDT 450 +P TP I M+ GSE T + W EY+N+ ++K + + AK + K+ D Sbjct: 381 RPSWTPIIK-MTQGSENTLFKDKFKKGSWGEYVNDNFEKKPITGKGVAAKAVQEKINVDA 439 Query: 451 EQRPHKVSFLVDKKNAQGVIKSLSDKFEKRGVDAKI 558 P K + + K+ + I +L +K + KI Sbjct: 440 LHNPEK--YQLSKEERKSTIPTLHHVDDKHRGELKI 473
>W_HENDV (P0C1C6) Protein W| Length = 448 Score = 31.6 bits (70), Expect = 2.5 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Frame = +1 Query: 280 PMLTPDITIMSVGSEIT-YGEAMVPDDGWEEYLNNKWDKNIVLEETAKFSELKLQPDTEQ 456 PM+T D+ G E T +G + P+ GW +++ D N+ + PDT+ Sbjct: 109 PMVT-DVVYHDHGGECTGHGPSSSPERGWSYHMSGTHDGNV-----------RAVPDTKV 156 Query: 457 RPHKVSFLVDKKNAQGVIKSLSDKFEKRGVD 549 P+ V ++ + + L DKF G++ Sbjct: 157 LPNAPKTTVPEEVREIDLIGLEDKFASAGLN 187
>PHOSP_HENDV (O55778) Phosphoprotein (Protein P)| Length = 707 Score = 31.6 bits (70), Expect = 2.5 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Frame = +1 Query: 280 PMLTPDITIMSVGSEIT-YGEAMVPDDGWEEYLNNKWDKNIVLEETAKFSELKLQPDTEQ 456 PM+T D+ G E T +G + P+ GW +++ D N+ + PDT+ Sbjct: 109 PMVT-DVVYHDHGGECTGHGPSSSPERGWSYHMSGTHDGNV-----------RAVPDTKV 156 Query: 457 RPHKVSFLVDKKNAQGVIKSLSDKFEKRGVD 549 P+ V ++ + + L DKF G++ Sbjct: 157 LPNAPKTTVPEEVREIDLIGLEDKFASAGLN 187
>V_HENDV (O55777) Nonstructural protein V| Length = 457 Score = 31.6 bits (70), Expect = 2.5 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Frame = +1 Query: 280 PMLTPDITIMSVGSEIT-YGEAMVPDDGWEEYLNNKWDKNIVLEETAKFSELKLQPDTEQ 456 PM+T D+ G E T +G + P+ GW +++ D N+ + PDT+ Sbjct: 109 PMVT-DVVYHDHGGECTGHGPSSSPERGWSYHMSGTHDGNV-----------RAVPDTKV 156 Query: 457 RPHKVSFLVDKKNAQGVIKSLSDKFEKRGVD 549 P+ V ++ + + L DKF G++ Sbjct: 157 LPNAPKTTVPEEVREIDLIGLEDKFASAGLN 187
>RNG_HAEIN (P45175) Ribonuclease G (EC 3.1.4.-) (RNase G) (Cytoplasmic axial| filament protein) Length = 491 Score = 30.0 bits (66), Expect = 7.2 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 10/82 (12%) Frame = +1 Query: 367 EYLNNKWDKNIVLEETAKF---SELKLQPDTEQR-------PHKVSFLVDKKNAQGVIKS 516 E+L W K VLE +K+ S++ +P QR + +D K G +K Sbjct: 188 EFLKRLWRK--VLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCFGEVKE 245 Query: 517 LSDKFEKRGVDAKIIYSGGQDL 582 +D+F D ++YSG Q + Sbjct: 246 FTDEFMPELSDKLVLYSGNQPI 267
>ATS8_HUMAN (Q9UP79) ADAMTS-8 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 8) (ADAM-TS 8) (ADAM-TS8) (METH-2) (METH-8) Length = 890 Score = 30.0 bits (66), Expect = 7.2 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%) Frame = -2 Query: 229 RREGNPGSRQTPKGPRT*AETGSLRHDDRPSCDRDLKQSS------GAQSP*PYPFLAAL 68 +R G G+R P+GP ETG + +R D ++ S GA P P P A Sbjct: 152 QRWGPAGARPLPRGPEWEVETGEGQRQERGDHQEDSEEESQEEEAEGASEP-PPPLGATS 210 Query: 67 TEXRWPAAARSI 32 R+ + AR + Sbjct: 211 RTKRFVSEARFV 222
>DP13A_MOUSE (Q8K3H0) DCC-interacting protein 13 alpha (Dip13 alpha) (Adapter| protein containing PH domain, PTB domain and leucine zipper motif 1) Length = 707 Score = 29.6 bits (65), Expect = 9.4 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -1 Query: 698 SLPESPQTRVLLGVFPHEPNFLSKY 624 +L +SPQTR LLGVF + +S Y Sbjct: 12 TLEDSPQTRSLLGVFEEDATAISNY 36
>DP13A_HUMAN (Q9UKG1) DCC-interacting protein 13 alpha (Dip13 alpha) (Adapter| protein containing PH domain, PTB domain and leucine zipper motif 1) Length = 709 Score = 29.6 bits (65), Expect = 9.4 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -1 Query: 698 SLPESPQTRVLLGVFPHEPNFLSKY 624 +L +SPQTR LLGVF + +S Y Sbjct: 12 TLEDSPQTRSLLGVFEEDATAISNY 36
>DCR1A_CHICK (Q5QJC4) DNA cross-link repair 1A protein (chSNM1A)| Length = 972 Score = 29.6 bits (65), Expect = 9.4 Identities = 26/91 (28%), Positives = 41/91 (45%) Frame = +1 Query: 256 YKESRKEKPMLTPDITIMSVGSEITYGEAMVPDDGWEEYLNNKWDKNIVLEETAKFSELK 435 YK RK KP PD T +S+ +T G+ G + K++ T + SE + Sbjct: 14 YKSIRKRKPQSNPDSTSVSM-QTVTKGKCRPKRKG-----SGNRKKSVEKNSTPQKSEQR 67 Query: 436 LQPDTEQRPHKVSFLVDKKNAQGVIKSLSDK 528 L+P + P K V AQ + SL+++ Sbjct: 68 LRPSEDLDPCKDDSSV---YAQESVSSLTEQ 95
>IF2_XANC5 (Q3BRP5) Translation initiation factor IF-2| Length = 904 Score = 29.6 bits (65), Expect = 9.4 Identities = 18/48 (37%), Positives = 22/48 (45%) Frame = -2 Query: 148 DRPSCDRDLKQSSGAQSP*PYPFLAALTEXRWPAAARSICSPPPAPRA 5 DR +R + + A + P P A T AARS SP APRA Sbjct: 167 DRAEAERKAAEEAAAAASAPAPVADAPTPSAAAPAARSPSSPSSAPRA 214
>FATE1_PIG (Q95LB4) Fetal and adult testis expressed transcript protein| homolog Length = 171 Score = 29.6 bits (65), Expect = 9.4 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = -3 Query: 213 LAVDRLPKGPEPKQRQVLFVMMIDHRVIEI*NNHQARRALD 91 LA + +PK EP + QVL M++H + + Q+R+ LD Sbjct: 15 LAEELVPKSQEPSREQVLIAEMLEHGIRSL-GASQSRQKLD 54
>3BP5_DROME (Q9V785) SH3 domain-binding protein 5-like (Parcase protein)| Length = 476 Score = 29.6 bits (65), Expect = 9.4 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Frame = +1 Query: 334 GEAMVPDDGWEEYLN---NKWDKNIVLEETAKFSELKLQPDTEQRP 462 G+ +D WE L +K D ++L+ETAK + TEQRP Sbjct: 335 GDGQQQNDVWEHELKATVDKLDHLMMLKETAKRQQTNRLKSTEQRP 380 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.133 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,748,017 Number of Sequences: 219361 Number of extensions: 2124824 Number of successful extensions: 4925 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4664 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4910 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7082949625 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
