ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63d22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_186220.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2031 Score = 170 bits (86), Expect = 3e-39 Identities = 173/202 (85%) Strand = Plus / Plus Query: 319 acctctcaccagtgctcacagaccaagcataccttggcttctcatcctccacaggtttaa 378 |||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||| |||| Sbjct: 695 acctctcaacagtgctaacagatcaagcataccttggcttctcatcctcaacaggcttaa 754 Query: 379 gcacggggcatcactatgtgcttggttggagctttggaatgggcacccctgctccagtca 438 |||| || ||||||||||| ||||||||||| ||||| || | ||||||||| ||| Sbjct: 755 gcacaggacatcactatgttcttggttggagttttgggctgaatattcctgctccaatca 814 Query: 439 tagatcccaccaaactacccaagctgccttaccttggtccaagacctcaatccaaactcc 498 | || ||||| || ||||| || |||||| | ||| ||||||||||||||||||||||| Sbjct: 815 ttgaccccacaaagctacctaaactgcctaatcttagtccaagacctcaatccaaactct 874 Query: 499 tagagattgttctgcccatagc 520 ||||||||||||| || ||||| Sbjct: 875 tagagattgttctaccaatagc 896 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 60 gagttcggggacatcgacaacaaccatgtcggcatagacatcaacagcctcaactc 115 |||||||||||||||||||| || |||||||| || || |||||||| |||||||| Sbjct: 454 gagttcggggacatcgacaataatcatgtcgggattgatatcaacagtctcaactc 509
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 170 bits (86), Expect = 3e-39 Identities = 173/202 (85%) Strand = Plus / Minus Query: 319 acctctcaccagtgctcacagaccaagcataccttggcttctcatcctccacaggtttaa 378 |||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||| |||| Sbjct: 1664711 acctctcaacagtgctaacagatcaagcataccttggcttctcatcctcaacaggcttaa 1664652 Query: 379 gcacggggcatcactatgtgcttggttggagctttggaatgggcacccctgctccagtca 438 |||| || ||||||||||| ||||||||||| ||||| || | ||||||||| ||| Sbjct: 1664651 gcacaggacatcactatgttcttggttggagttttgggctgaatattcctgctccaatca 1664592 Query: 439 tagatcccaccaaactacccaagctgccttaccttggtccaagacctcaatccaaactcc 498 | || ||||| || ||||| || |||||| | ||| ||||||||||||||||||||||| Sbjct: 1664591 ttgaccccacaaagctacctaaactgcctaatcttagtccaagacctcaatccaaactct 1664532 Query: 499 tagagattgttctgcccatagc 520 ||||||||||||| || ||||| Sbjct: 1664531 tagagattgttctaccaatagc 1664510 Score = 163 bits (82), Expect = 7e-37 Identities = 178/210 (84%) Strand = Plus / Minus Query: 311 agtctatgacctctcaccagtgctcacagaccaagcataccttggcttctcatcctccac 370 ||||||| |||||||| ||||||| ||||| |||||||||||||||||||||||||| || Sbjct: 1674709 agtctataacctctcaacagtgctaacagatcaagcataccttggcttctcatcctcaac 1674650 Query: 371 aggtttaagcacggggcatcactatgtgcttggttggagctttggaatgggcacccctgc 430 || |||||||| || ||||||||||| ||||||||||| ||||| || | ||||| Sbjct: 1674649 gggcttaagcacaggacatcactatgttcttggttggagttttgggctgaatattcctgc 1674590 Query: 431 tccagtcatagatcccaccaaactacccaagctgccttaccttggtccaagacctcaatc 490 |||| |||| || ||||| || ||||| || |||||| | ||| |||||| ||||||||| Sbjct: 1674589 tccaatcattgaccccacaaagctacctaaactgcctaatcttagtccaaaacctcaatc 1674530 Query: 491 caaactcctagagattgttctgcccatagc 520 ||||||| ||||||||||||| || ||||| Sbjct: 1674529 caaactcttagagattgttctaccaatagc 1674500 Score = 119 bits (60), Expect = 1e-23 Identities = 84/92 (91%) Strand = Plus / Plus Query: 16 ccaaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcg 75 |||||||| |||||| |||||||||||||||||||||||||||||| ||| ||||||| Sbjct: 1776149 ccaaccacatcttcgtcgtcgagctcgacaccatccagaacaccgacttcatggacatca 1776208 Query: 76 acaacaaccatgtcggcatagacatcaacagc 107 ||||||||||||||||| | |||||||||||| Sbjct: 1776209 acaacaaccatgtcggcgtcgacatcaacagc 1776240 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Minus Query: 17 caaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcga 76 ||||||| | ||||||||||||||||||| |||| |||| |||||||||| |||||||| Sbjct: 23237322 caaccacgtgttcgccgtcgagctcgacatcatcacgaaccccgagttcggcgacatcga 23237263 Query: 77 caacaaccatgtcggcatagacatcaacagcctca 111 || |||||| |||||| | ||| |||| ||||||| Sbjct: 23237262 cagcaaccacgtcggcgtcgacgtcaatagcctca 23237228 Score = 79.8 bits (40), Expect = 9e-12 Identities = 55/60 (91%) Strand = Plus / Plus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccga 61 |||||||| | ||||||||||||||||||| || |||||||||||| ||||||||||||| Sbjct: 9284941 caacggcaacacgaccaaccacctcttcgcggttgagctcgacaccgtccagaacaccga 9285000 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 28 tcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaaccatg 87 ||||||||||||||||||||||||||| | ||||||| |||||||| || |||||| | Sbjct: 1624973 tcgccgtcgagctcgacaccatccagagcgtcgagttcagggacatcaacgccaaccacg 1624914 Query: 88 tcggcatagacatcaacagcctc 110 ||||| | ||||||||| ||||| Sbjct: 1624913 tcggcgtcgacatcaacggcctc 1624891 Score = 75.8 bits (38), Expect = 1e-10 Identities = 80/94 (85%) Strand = Plus / Minus Query: 18 aaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgac 77 ||||||||| ||| |||||||||||||||| |||||||| ||||||| | || |||||| Sbjct: 1637015 aaccacctcgtcggcgtcgagctcgacaccgaccagaacaacgagttccgtgatatcgac 1636956 Query: 78 aacaaccatgtcggcatagacatcaacagcctca 111 |||||| ||||| | |||||||||||||||| Sbjct: 1636955 ggcaaccacatcggcgtcgacatcaacagcctca 1636922 Score = 69.9 bits (35), Expect = 8e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 28 tcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaaccatg 87 |||||||||||||||||||||| |||||| ||||||| | ||||| || ||| ||||| Sbjct: 9294494 tcgccgtcgagctcgacaccatgcagaacgacgagttccgcgacattaacgacagccatg 9294435 Query: 88 tcggcatagacatcaacagcctc 110 | || || ||||||||||||||| Sbjct: 9294434 ttggaatcgacatcaacagcctc 9294412 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 346 cataccttggcttctcatcctccacaggtttaagcacggggcatcactatgtgcttggtt 405 |||| ||||| ||||||||||| ||||| |||||||| | |||||||| || ||||||| Sbjct: 1699433 catatcttggtttctcatcctcaacaggcttaagcacagctcatcactacgttcttggtt 1699374 Query: 406 ggagctttgg 415 |||||||||| Sbjct: 1699373 ggagctttgg 1699364 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 60 gagttcggggacatcgacaacaaccatgtcggcatagacatcaacagcctcaactc 115 |||||||||||||||||||| || |||||||| || || |||||||| |||||||| Sbjct: 1664952 gagttcggggacatcgacaataatcatgtcgggattgatatcaacagtctcaactc 1664897 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 14 gaccaaccacctcttcgccgtcgagctcgacaccatcc 51 ||||||||||||||||||||| ||| |||||||||||| Sbjct: 14495968 gaccaaccacctcttcgccgttgagttcgacaccatcc 14496005 Score = 60.0 bits (30), Expect = 8e-06 Identities = 72/86 (83%) Strand = Plus / Minus Query: 25 tcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaacc 84 ||||||||||||||||||||||| | ||| | ||||||| | |||||| || |||||| Sbjct: 1629284 tcttcgccgtcgagctcgacaccctgcagcaggacgagttccgcgacatcaacgacaacc 1629225 Query: 85 atgtcggcatagacatcaacagcctc 110 | |||||| | ||||||||| ||||| Sbjct: 1629224 acgtcggcgtcgacatcaacggcctc 1629199 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 11 cgcgaccaaccacctcttcgccgtcgagctcgacaccatcc 51 |||||||||||||||||||| ||| ||| |||||||||||| Sbjct: 18410445 cgcgaccaaccacctcttcgtcgttgagttcgacaccatcc 18410405 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 60 gagttcggggacatcgacaacaaccatgtcggcatagacat 100 ||||| ||||||||||||||||||||||| ||||| ||||| Sbjct: 1699701 gagtttggggacatcgacaacaaccatgttggcattgacat 1699661 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 60 gagttcggggacatcgacaacaaccatgtcggcatagacatcaacagcctcaactc 115 |||||||| ||||||||||| || |||||||| || || |||||||| |||||||| Sbjct: 1674942 gagttcggagacatcgacaataatcatgtcgggattgatatcaacagtctcaactc 1674887 Score = 54.0 bits (27), Expect = 5e-04 Identities = 81/99 (81%) Strand = Plus / Minus Query: 17 caaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcga 76 ||||||| | |||||||| || |||||||| ||||||||||||||| | || ||||| Sbjct: 1647722 caaccacatgttcgccgtggaaatcgacaccgcccagaacaccgagttggacgatatcga 1647663 Query: 77 caacaaccatgtcggcatagacatcaacagcctcaactc 115 | |||| |||||||| ||||||||||||||| |||| Sbjct: 1647662 tggctaccacgtcggcatcgacatcaacagcctccactc 1647624 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 30 gccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaaccatgtc 89 ||||||||||| ||||||||| |||| |||||||| |||||| || |||||| ||| Sbjct: 23226894 gccgtcgagctggacaccatcatgaaccccgagttccacgacatcagcagcaaccacgtc 23226835 Query: 90 ggcatagacatcaacagcctca 111 ||||| ||| ||||||||||| Sbjct: 23226834 ggcatcgacgccaacagcctca 23226813 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 25 tcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatc 74 ||||||| |||||||||||||||||||| |||| ||||| || |||||| Sbjct: 10844900 tcttcgctgtcgagctcgacaccatccaaaacaaggagtttggcgacatc 10844851 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 328 cagtgctcacagaccaagcataccttggcttctc 361 |||||||||| |||||||||||| |||||||||| Sbjct: 1647420 cagtgctcactgaccaagcatacattggcttctc 1647387 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Minus Query: 314 ctatgacctctcaccagtgctcacagac 341 ||||||||||||| |||||||||||||| Sbjct: 1656267 ctatgacctctcaacagtgctcacagac 1656240 Score = 46.1 bits (23), Expect = 0.12 Identities = 38/43 (88%) Strand = Plus / Minus Query: 69 gacatcgacaacaaccatgtcggcatagacatcaacagcctca 111 ||||||||||||||||| || || || ||||||||||||||| Sbjct: 10839090 gacatcgacaacaaccacgttggaatcaacatcaacagcctca 10839048 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 27 ttcgccgtcgagctcgacaccatccagaaca 57 ||||||||||||||||||||| |||| |||| Sbjct: 1609095 ttcgccgtcgagctcgacaccttccaaaaca 1609065 Score = 44.1 bits (22), Expect = 0.47 Identities = 37/42 (88%) Strand = Plus / Plus Query: 66 ggggacatcgacaacaaccatgtcggcatagacatcaacagc 107 ||||||||||| |||||||||| ||||| ||||||||||| Sbjct: 1744746 ggggacatcgatgacaaccatgttggcatcaacatcaacagc 1744787 Score = 44.1 bits (22), Expect = 0.47 Identities = 46/54 (85%) Strand = Plus / Minus Query: 68 ggacatcgacaacaaccatgtcggcatagacatcaacagcctcaactcggtgga 121 ||||||| ||||||||||| |||| | |||||||| ||||| |||||||||| Sbjct: 1633575 ggacatcaacaacaaccatatcggtgttgacatcaatggcctccactcggtgga 1633522 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 actatgtgcttggttggagctttg 414 ||||||||||||| |||||||||| Sbjct: 1776509 actatgtgcttggctggagctttg 1776532 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 211 cgatacaggtctgggtggaataccatgg 238 |||| |||||||||||||| |||||||| Sbjct: 1624808 cgatgcaggtctgggtggactaccatgg 1624781
>dbj|AP004014.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1606_D04 Length = 92729 Score = 170 bits (86), Expect = 3e-39 Identities = 173/202 (85%) Strand = Plus / Minus Query: 319 acctctcaccagtgctcacagaccaagcataccttggcttctcatcctccacaggtttaa 378 |||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||| |||| Sbjct: 6911 acctctcaacagtgctaacagatcaagcataccttggcttctcatcctcaacaggcttaa 6852 Query: 379 gcacggggcatcactatgtgcttggttggagctttggaatgggcacccctgctccagtca 438 |||| || ||||||||||| ||||||||||| ||||| || | ||||||||| ||| Sbjct: 6851 gcacaggacatcactatgttcttggttggagttttgggctgaatattcctgctccaatca 6792 Query: 439 tagatcccaccaaactacccaagctgccttaccttggtccaagacctcaatccaaactcc 498 | || ||||| || ||||| || |||||| | ||| ||||||||||||||||||||||| Sbjct: 6791 ttgaccccacaaagctacctaaactgcctaatcttagtccaagacctcaatccaaactct 6732 Query: 499 tagagattgttctgcccatagc 520 ||||||||||||| || ||||| Sbjct: 6731 tagagattgttctaccaatagc 6710 Score = 163 bits (82), Expect = 7e-37 Identities = 178/210 (84%) Strand = Plus / Minus Query: 311 agtctatgacctctcaccagtgctcacagaccaagcataccttggcttctcatcctccac 370 ||||||| |||||||| ||||||| ||||| |||||||||||||||||||||||||| || Sbjct: 16909 agtctataacctctcaacagtgctaacagatcaagcataccttggcttctcatcctcaac 16850 Query: 371 aggtttaagcacggggcatcactatgtgcttggttggagctttggaatgggcacccctgc 430 || |||||||| || ||||||||||| ||||||||||| ||||| || | ||||| Sbjct: 16849 gggcttaagcacaggacatcactatgttcttggttggagttttgggctgaatattcctgc 16790 Query: 431 tccagtcatagatcccaccaaactacccaagctgccttaccttggtccaagacctcaatc 490 |||| |||| || ||||| || ||||| || |||||| | ||| |||||| ||||||||| Sbjct: 16789 tccaatcattgaccccacaaagctacctaaactgcctaatcttagtccaaaacctcaatc 16730 Query: 491 caaactcctagagattgttctgcccatagc 520 ||||||| ||||||||||||| || ||||| Sbjct: 16729 caaactcttagagattgttctaccaatagc 16700 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 346 cataccttggcttctcatcctccacaggtttaagcacggggcatcactatgtgcttggtt 405 |||| ||||| ||||||||||| ||||| |||||||| | |||||||| || ||||||| Sbjct: 41633 catatcttggtttctcatcctcaacaggcttaagcacagctcatcactacgttcttggtt 41574 Query: 406 ggagctttgg 415 |||||||||| Sbjct: 41573 ggagctttgg 41564 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 60 gagttcggggacatcgacaacaaccatgtcggcatagacatcaacagcctcaactc 115 |||||||||||||||||||| || |||||||| || || |||||||| |||||||| Sbjct: 7152 gagttcggggacatcgacaataatcatgtcgggattgatatcaacagtctcaactc 7097 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 60 gagttcggggacatcgacaacaaccatgtcggcatagacat 100 ||||| ||||||||||||||||||||||| ||||| ||||| Sbjct: 41901 gagtttggggacatcgacaacaaccatgttggcattgacat 41861 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 60 gagttcggggacatcgacaacaaccatgtcggcatagacatcaacagcctcaactc 115 |||||||| ||||||||||| || |||||||| || || |||||||| |||||||| Sbjct: 17142 gagttcggagacatcgacaataatcatgtcgggattgatatcaacagtctcaactc 17087 Score = 44.1 bits (22), Expect = 0.47 Identities = 37/42 (88%) Strand = Plus / Plus Query: 66 ggggacatcgacaacaaccatgtcggcatagacatcaacagc 107 ||||||||||| |||||||||| ||||| ||||||||||| Sbjct: 86946 ggggacatcgatgacaaccatgttggcatcaacatcaacagc 86987
>dbj|AP006172.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0088O14 Length = 179483 Score = 170 bits (86), Expect = 3e-39 Identities = 173/202 (85%) Strand = Plus / Minus Query: 319 acctctcaccagtgctcacagaccaagcataccttggcttctcatcctccacaggtttaa 378 |||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||| |||| Sbjct: 133366 acctctcaacagtgctaacagatcaagcataccttggcttctcatcctcaacaggcttaa 133307 Query: 379 gcacggggcatcactatgtgcttggttggagctttggaatgggcacccctgctccagtca 438 |||| || ||||||||||| ||||||||||| ||||| || | ||||||||| ||| Sbjct: 133306 gcacaggacatcactatgttcttggttggagttttgggctgaatattcctgctccaatca 133247 Query: 439 tagatcccaccaaactacccaagctgccttaccttggtccaagacctcaatccaaactcc 498 | || ||||| || ||||| || |||||| | ||| ||||||||||||||||||||||| Sbjct: 133246 ttgaccccacaaagctacctaaactgcctaatcttagtccaagacctcaatccaaactct 133187 Query: 499 tagagattgttctgcccatagc 520 ||||||||||||| || ||||| Sbjct: 133186 tagagattgttctaccaatagc 133165 Score = 163 bits (82), Expect = 7e-37 Identities = 178/210 (84%) Strand = Plus / Minus Query: 311 agtctatgacctctcaccagtgctcacagaccaagcataccttggcttctcatcctccac 370 ||||||| |||||||| ||||||| ||||| |||||||||||||||||||||||||| || Sbjct: 143364 agtctataacctctcaacagtgctaacagatcaagcataccttggcttctcatcctcaac 143305 Query: 371 aggtttaagcacggggcatcactatgtgcttggttggagctttggaatgggcacccctgc 430 || |||||||| || ||||||||||| ||||||||||| ||||| || | ||||| Sbjct: 143304 gggcttaagcacaggacatcactatgttcttggttggagttttgggctgaatattcctgc 143245 Query: 431 tccagtcatagatcccaccaaactacccaagctgccttaccttggtccaagacctcaatc 490 |||| |||| || ||||| || ||||| || |||||| | ||| |||||| ||||||||| Sbjct: 143244 tccaatcattgaccccacaaagctacctaaactgcctaatcttagtccaaaacctcaatc 143185 Query: 491 caaactcctagagattgttctgcccatagc 520 ||||||| ||||||||||||| || ||||| Sbjct: 143184 caaactcttagagattgttctaccaatagc 143155 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 28 tcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaaccatg 87 ||||||||||||||||||||||||||| | ||||||| |||||||| || |||||| | Sbjct: 93628 tcgccgtcgagctcgacaccatccagagcgtcgagttcagggacatcaacgccaaccacg 93569 Query: 88 tcggcatagacatcaacagcctc 110 ||||| | ||||||||| ||||| Sbjct: 93568 tcggcgtcgacatcaacggcctc 93546 Score = 75.8 bits (38), Expect = 1e-10 Identities = 80/94 (85%) Strand = Plus / Minus Query: 18 aaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgac 77 ||||||||| ||| |||||||||||||||| |||||||| ||||||| | || |||||| Sbjct: 105670 aaccacctcgtcggcgtcgagctcgacaccgaccagaacaacgagttccgtgatatcgac 105611 Query: 78 aacaaccatgtcggcatagacatcaacagcctca 111 |||||| ||||| | |||||||||||||||| Sbjct: 105610 ggcaaccacatcggcgtcgacatcaacagcctca 105577 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 346 cataccttggcttctcatcctccacaggtttaagcacggggcatcactatgtgcttggtt 405 |||| ||||| ||||||||||| ||||| |||||||| | |||||||| || ||||||| Sbjct: 168088 catatcttggtttctcatcctcaacaggcttaagcacagctcatcactacgttcttggtt 168029 Query: 406 ggagctttgg 415 |||||||||| Sbjct: 168028 ggagctttgg 168019 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 60 gagttcggggacatcgacaacaaccatgtcggcatagacatcaacagcctcaactc 115 |||||||||||||||||||| || |||||||| || || |||||||| |||||||| Sbjct: 133607 gagttcggggacatcgacaataatcatgtcgggattgatatcaacagtctcaactc 133552 Score = 60.0 bits (30), Expect = 8e-06 Identities = 72/86 (83%) Strand = Plus / Minus Query: 25 tcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaacc 84 ||||||||||||||||||||||| | ||| | ||||||| | |||||| || |||||| Sbjct: 97939 tcttcgccgtcgagctcgacaccctgcagcaggacgagttccgcgacatcaacgacaacc 97880 Query: 85 atgtcggcatagacatcaacagcctc 110 | |||||| | ||||||||| ||||| Sbjct: 97879 acgtcggcgtcgacatcaacggcctc 97854 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 60 gagttcggggacatcgacaacaaccatgtcggcatagacat 100 ||||| ||||||||||||||||||||||| ||||| ||||| Sbjct: 168356 gagtttggggacatcgacaacaaccatgttggcattgacat 168316 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 60 gagttcggggacatcgacaacaaccatgtcggcatagacatcaacagcctcaactc 115 |||||||| ||||||||||| || |||||||| || || |||||||| |||||||| Sbjct: 143597 gagttcggagacatcgacaataatcatgtcgggattgatatcaacagtctcaactc 143542 Score = 54.0 bits (27), Expect = 5e-04 Identities = 81/99 (81%) Strand = Plus / Minus Query: 17 caaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcga 76 ||||||| | |||||||| || |||||||| ||||||||||||||| | || ||||| Sbjct: 116377 caaccacatgttcgccgtggaaatcgacaccgcccagaacaccgagttggacgatatcga 116318 Query: 77 caacaaccatgtcggcatagacatcaacagcctcaactc 115 | |||| |||||||| ||||||||||||||| |||| Sbjct: 116317 tggctaccacgtcggcatcgacatcaacagcctccactc 116279 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 328 cagtgctcacagaccaagcataccttggcttctc 361 |||||||||| |||||||||||| |||||||||| Sbjct: 116075 cagtgctcactgaccaagcatacattggcttctc 116042 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Minus Query: 314 ctatgacctctcaccagtgctcacagac 341 ||||||||||||| |||||||||||||| Sbjct: 124922 ctatgacctctcaacagtgctcacagac 124895 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 27 ttcgccgtcgagctcgacaccatccagaaca 57 ||||||||||||||||||||| |||| |||| Sbjct: 77750 ttcgccgtcgagctcgacaccttccaaaaca 77720 Score = 44.1 bits (22), Expect = 0.47 Identities = 46/54 (85%) Strand = Plus / Minus Query: 68 ggacatcgacaacaaccatgtcggcatagacatcaacagcctcaactcggtgga 121 ||||||| ||||||||||| |||| | |||||||| ||||| |||||||||| Sbjct: 102230 ggacatcaacaacaaccatatcggtgttgacatcaatggcctccactcggtgga 102177 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 211 cgatacaggtctgggtggaataccatgg 238 |||| |||||||||||||| |||||||| Sbjct: 93463 cgatgcaggtctgggtggactaccatgg 93436
>ref|XM_476526.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2019 Score = 119 bits (60), Expect = 1e-23 Identities = 84/92 (91%) Strand = Plus / Plus Query: 16 ccaaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcg 75 |||||||| |||||| |||||||||||||||||||||||||||||| ||| ||||||| Sbjct: 446 ccaaccacatcttcgtcgtcgagctcgacaccatccagaacaccgacttcatggacatca 505 Query: 76 acaacaaccatgtcggcatagacatcaacagc 107 ||||||||||||||||| | |||||||||||| Sbjct: 506 acaacaaccatgtcggcgtcgacatcaacagc 537 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 actatgtgcttggttggagctttg 414 ||||||||||||| |||||||||| Sbjct: 806 actatgtgcttggctggagctttg 829
>ref|XM_476527.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2263 Score = 119 bits (60), Expect = 1e-23 Identities = 84/92 (91%) Strand = Plus / Plus Query: 16 ccaaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcg 75 |||||||| |||||| |||||||||||||||||||||||||||||| ||| ||||||| Sbjct: 524 ccaaccacatcttcgtcgtcgagctcgacaccatccagaacaccgacttcatggacatca 583 Query: 76 acaacaaccatgtcggcatagacatcaacagc 107 ||||||||||||||||| | |||||||||||| Sbjct: 584 acaacaaccatgtcggcgtcgacatcaacagc 615 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 actatgtgcttggttggagctttg 414 ||||||||||||| |||||||||| Sbjct: 884 actatgtgcttggctggagctttg 907
>dbj|AP003742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_D07 Length = 131449 Score = 119 bits (60), Expect = 1e-23 Identities = 84/92 (91%) Strand = Plus / Plus Query: 16 ccaaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcg 75 |||||||| |||||| |||||||||||||||||||||||||||||| ||| ||||||| Sbjct: 28368 ccaaccacatcttcgtcgtcgagctcgacaccatccagaacaccgacttcatggacatca 28427 Query: 76 acaacaaccatgtcggcatagacatcaacagc 107 ||||||||||||||||| | |||||||||||| Sbjct: 28428 acaacaaccatgtcggcgtcgacatcaacagc 28459 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 actatgtgcttggttggagctttg 414 ||||||||||||| |||||||||| Sbjct: 28728 actatgtgcttggctggagctttg 28751
>dbj|AK108625.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-E02, full insert sequence Length = 2259 Score = 111 bits (56), Expect = 2e-21 Identities = 83/92 (90%) Strand = Plus / Plus Query: 16 ccaaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcg 75 |||||||| |||||| ||||||||||||||||||||||||||||| ||| ||||||| Sbjct: 524 ccaaccacatcttcgtcgtcgagctcgacaccatccagaacaccggcttcatggacatca 583 Query: 76 acaacaaccatgtcggcatagacatcaacagc 107 ||||||||||||||||| | |||||||||||| Sbjct: 584 acaacaaccatgtcggcgtcgacatcaacagc 615 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 actatgtgcttggttggagctttg 414 ||||||||||||| |||||||||| Sbjct: 884 actatgtgcttggctggagctttg 907
>ref|XM_465090.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2052 Score = 103 bits (52), Expect = 6e-19 Identities = 88/100 (88%) Strand = Plus / Plus Query: 5 cggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccgagtt 64 ||||||||| | ||||||||| |||||||||||||||||||||||||||||| |||| || Sbjct: 429 cggcagcgccagcaaccacctgttcgccgtcgagctcgacaccatccagaaccccgactt 488 Query: 65 cggggacatcgacaacaaccatgtcggcatagacatcaac 104 | | |||||| |||||||||| ||||| || |||||||| Sbjct: 489 ccgcgacatcaacaacaaccacgtcgggatcaacatcaac 528
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 103 bits (52), Expect = 6e-19 Identities = 88/100 (88%) Strand = Plus / Plus Query: 5 cggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccgagtt 64 ||||||||| | ||||||||| |||||||||||||||||||||||||||||| |||| || Sbjct: 11410557 cggcagcgccagcaaccacctgttcgccgtcgagctcgacaccatccagaaccccgactt 11410616 Query: 65 cggggacatcgacaacaaccatgtcggcatagacatcaac 104 | | |||||| |||||||||| ||||| || |||||||| Sbjct: 11410617 ccgcgacatcaacaacaaccacgtcgggatcaacatcaac 11410656 Score = 50.1 bits (25), Expect = 0.008 Identities = 70/85 (82%) Strand = Plus / Plus Query: 25 tcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaacc 84 ||||||| || ||||| ||||||||| ||||| | || ||| |||||| || ||||| Sbjct: 11470716 tcttcgcggttgagcttgacaccatcgagaaccctgaattctccgacatcaacggcaacc 11470775 Query: 85 atgtcggcatagacatcaacagcct 109 |||||||||| |||||||| ||||| Sbjct: 11470776 atgtcggcatcgacatcaatagcct 11470800
>dbj|AP004123.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1654_A02 Length = 128520 Score = 103 bits (52), Expect = 6e-19 Identities = 88/100 (88%) Strand = Plus / Plus Query: 5 cggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccgagtt 64 ||||||||| | ||||||||| |||||||||||||||||||||||||||||| |||| || Sbjct: 80029 cggcagcgccagcaaccacctgttcgccgtcgagctcgacaccatccagaaccccgactt 80088 Query: 65 cggggacatcgacaacaaccatgtcggcatagacatcaac 104 | | |||||| |||||||||| ||||| || |||||||| Sbjct: 80089 ccgcgacatcaacaacaaccacgtcgggatcaacatcaac 80128
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 95.6 bits (48), Expect = 1e-16 Identities = 90/104 (86%) Strand = Plus / Minus Query: 6 ggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttc 65 |||| ||||| ||||||||||||||||||||||||||||||| | | |||| |||||| Sbjct: 8315168 ggcaacgcgagcaaccacctcttcgccgtcgagctcgacaccgtactgaacggggagttc 8315109 Query: 66 ggggacatcgacaacaaccatgtcggcatagacatcaacagcct 109 |||||||||| ||||||||||||| | |||||||||||||| Sbjct: 8315108 caggacatcgacgacaaccatgtcggtgtcgacatcaacagcct 8315065 Score = 61.9 bits (31), Expect = 2e-06 Identities = 91/111 (81%) Strand = Plus / Plus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccga 61 |||||||| | | ||||||||| |||||| ||||||||||||||||||| | | |||| Sbjct: 31704938 caacggcaacaccaccaaccacatcttcggcgtcgagctcgacaccatcgtcagctccga 31704997 Query: 62 gttcggggacatcgacaacaaccatgtcggcatagacatcaacagcctcaa 112 |||| ||| || ||||||| |||||||| ||||||||||||||||| Sbjct: 31704998 gttccaggatcctaacgacaaccacgtcggcatcgacatcaacagcctcaa 31705048 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 79 acaaccatgtcggcatagacatcaacagcctcaa 112 ||||||||||| |||| ||||||||||||||||| Sbjct: 31673319 acaaccatgtcagcatcgacatcaacagcctcaa 31673352 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Minus Query: 12 gcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggac 71 |||| ||||||| |||| |||||||||||||||||| ||| | | | ||| || ||| Sbjct: 8312495 gcgagcaaccacgtctttgccgtcgagctcgacaccgtcctcagcccggagctccacgac 8312436 Query: 72 atcgacaacaaccatgtcggcatagacatcaacagcct 109 || |||| ||||||||||||||| ||| | |||||||| Sbjct: 8312435 atagacagcaaccatgtcggcattgacgtgaacagcct 8312398 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Plus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatc 50 |||||||| | | ||||||||| |||||| ||| ||||||||||||||| Sbjct: 31673242 caacggcaacacaaccaaccacatcttcggcgttgagctcgacaccatc 31673290 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 accaaccacctcttcgccgtc 35 ||||||||||||||||||||| Sbjct: 15470320 accaaccacctcttcgccgtc 15470300
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 95.6 bits (48), Expect = 1e-16 Identities = 90/104 (86%) Strand = Plus / Minus Query: 6 ggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttc 65 |||| ||||| ||||||||||||||||||||||||||||||| | | |||| |||||| Sbjct: 8313003 ggcaacgcgagcaaccacctcttcgccgtcgagctcgacaccgtactgaacggggagttc 8312944 Query: 66 ggggacatcgacaacaaccatgtcggcatagacatcaacagcct 109 |||||||||| ||||||||||||| | |||||||||||||| Sbjct: 8312943 caggacatcgacgacaaccatgtcggtgtcgacatcaacagcct 8312900 Score = 61.9 bits (31), Expect = 2e-06 Identities = 91/111 (81%) Strand = Plus / Plus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccga 61 |||||||| | | ||||||||| |||||| ||||||||||||||||||| | | |||| Sbjct: 31795454 caacggcaacaccaccaaccacatcttcggcgtcgagctcgacaccatcgtcagctccga 31795513 Query: 62 gttcggggacatcgacaacaaccatgtcggcatagacatcaacagcctcaa 112 |||| ||| || ||||||| |||||||| ||||||||||||||||| Sbjct: 31795514 gttccaggatcctaacgacaaccacgtcggcatcgacatcaacagcctcaa 31795564 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 79 acaaccatgtcggcatagacatcaacagcctcaa 112 ||||||||||| |||| ||||||||||||||||| Sbjct: 31763835 acaaccatgtcagcatcgacatcaacagcctcaa 31763868 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Minus Query: 12 gcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggac 71 |||| ||||||| |||| |||||||||||||||||| ||| | | | ||| || ||| Sbjct: 8310330 gcgagcaaccacgtctttgccgtcgagctcgacaccgtcctcagcccggagctccacgac 8310271 Query: 72 atcgacaacaaccatgtcggcatagacatcaacagcct 109 || |||| ||||||||||||||| ||| | |||||||| Sbjct: 8310270 atagacagcaaccatgtcggcattgacgtgaacagcct 8310233 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Plus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatc 50 |||||||| | | ||||||||| |||||| ||| ||||||||||||||| Sbjct: 31763758 caacggcaacacaaccaaccacatcttcggcgttgagctcgacaccatc 31763806 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 accaaccacctcttcgccgtc 35 ||||||||||||||||||||| Sbjct: 15464854 accaaccacctcttcgccgtc 15464834
>gb|AC135495.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1664B11, complete sequence Length = 126040 Score = 95.6 bits (48), Expect = 1e-16 Identities = 90/104 (86%) Strand = Plus / Minus Query: 6 ggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttc 65 |||| ||||| ||||||||||||||||||||||||||||||| | | |||| |||||| Sbjct: 52424 ggcaacgcgagcaaccacctcttcgccgtcgagctcgacaccgtactgaacggggagttc 52365 Query: 66 ggggacatcgacaacaaccatgtcggcatagacatcaacagcct 109 |||||||||| ||||||||||||| | |||||||||||||| Sbjct: 52364 caggacatcgacgacaaccatgtcggtgtcgacatcaacagcct 52321 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Minus Query: 12 gcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggac 71 |||| ||||||| |||| |||||||||||||||||| ||| | | | ||| || ||| Sbjct: 49751 gcgagcaaccacgtctttgccgtcgagctcgacaccgtcctcagcccggagctccacgac 49692 Query: 72 atcgacaacaaccatgtcggcatagacatcaacagcct 109 || |||| ||||||||||||||| ||| | |||||||| Sbjct: 49691 atagacagcaaccatgtcggcattgacgtgaacagcct 49654
>ref|XM_478825.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2079 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 17 caaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcga 76 ||||||| | ||||||||||||||||||| |||| |||| |||||||||| |||||||| Sbjct: 456 caaccacgtgttcgccgtcgagctcgacatcatcacgaaccccgagttcggcgacatcga 515 Query: 77 caacaaccatgtcggcatagacatcaacagcctca 111 || |||||| |||||| | ||| |||| ||||||| Sbjct: 516 cagcaaccacgtcggcgtcgacgtcaatagcctca 550
>dbj|AP003758.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1562_B11 Length = 112144 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Minus Query: 17 caaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcga 76 ||||||| | ||||||||||||||||||| |||| |||| |||||||||| |||||||| Sbjct: 100236 caaccacgtgttcgccgtcgagctcgacatcatcacgaaccccgagttcggcgacatcga 100177 Query: 77 caacaaccatgtcggcatagacatcaacagcctca 111 || |||||| |||||| | ||| |||| ||||||| Sbjct: 100176 cagcaaccacgtcggcgtcgacgtcaatagcctca 100142 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 30 gccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaaccatgtc 89 ||||||||||| ||||||||| |||| |||||||| |||||| || |||||| ||| Sbjct: 89808 gccgtcgagctggacaccatcatgaaccccgagttccacgacatcagcagcaaccacgtc 89749 Query: 90 ggcatagacatcaacagcctca 111 ||||| ||| ||||||||||| Sbjct: 89748 ggcatcgacgccaacagcctca 89727
>dbj|AP004304.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0483E06 Length = 159035 Score = 79.8 bits (40), Expect = 9e-12 Identities = 55/60 (91%) Strand = Plus / Plus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccga 61 |||||||| | ||||||||||||||||||| || |||||||||||| ||||||||||||| Sbjct: 47785 caacggcaacacgaccaaccacctcttcgcggttgagctcgacaccgtccagaacaccga 47844 Score = 69.9 bits (35), Expect = 8e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 28 tcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaaccatg 87 |||||||||||||||||||||| |||||| ||||||| | ||||| || ||| ||||| Sbjct: 57338 tcgccgtcgagctcgacaccatgcagaacgacgagttccgcgacattaacgacagccatg 57279 Query: 88 tcggcatagacatcaacagcctc 110 | || || ||||||||||||||| Sbjct: 57278 ttggaatcgacatcaacagcctc 57256
>ref|NM_196700.1| Oryza sativa (japonica cultivar-group) putative receptor-like protein kinase (OSJNBa0046P18.9), mRNA Length = 3579 Score = 77.8 bits (39), Expect = 3e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccga 61 |||||||| ||| | ||||| | ||||||||||||||||||||||||||| ||| | || Sbjct: 1932 caacggcaacgccagcaaccgcgtcttcgccgtcgagctcgacaccatcctcaacccgga 1991 Query: 62 gttcggggacatcgacaacaaccatgtcggc 92 |||| |||||||| ||| |||||| |||||| Sbjct: 1992 gttccgggacatcaacagcaaccacgtcggc 2022
>ref|XM_476511.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2361 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 28 tcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaaccatg 87 ||||||||||||||||||||||||||| | ||||||| |||||||| || |||||| | Sbjct: 451 tcgccgtcgagctcgacaccatccagagcgtcgagttcagggacatcaacgccaaccacg 510 Query: 88 tcggcatagacatcaacagcctc 110 ||||| | ||||||||| ||||| Sbjct: 511 tcggcgtcgacatcaacggcctc 533 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 211 cgatacaggtctgggtggaataccatgg 238 |||| |||||||||||||| |||||||| Sbjct: 616 cgatgcaggtctgggtggactaccatgg 643
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 77.8 bits (39), Expect = 3e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccga 61 |||||||| ||| | ||||| | ||||||||||||||||||||||||||| ||| | || Sbjct: 15360605 caacggcaacgccagcaaccgcgtcttcgccgtcgagctcgacaccatcctcaacccgga 15360664 Query: 62 gttcggggacatcgacaacaaccatgtcggc 92 |||| |||||||| ||| |||||| |||||| Sbjct: 15360665 gttccgggacatcaacagcaaccacgtcggc 15360695 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 60 gagttcggggacatcgacaacaaccatgtcggcatagacatcaacagcctcaactc 115 ||||||| ||||||| |||||||||| |||||| | ||| |||||||||||||||| Sbjct: 15364098 gagttcgcggacatcaacaacaaccacgtcggcgtcgacgtcaacagcctcaactc 15364153
>gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0046P18, complete sequence Length = 144720 Score = 77.8 bits (39), Expect = 3e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccga 61 |||||||| ||| | ||||| | ||||||||||||||||||||||||||| ||| | || Sbjct: 77968 caacggcaacgccagcaaccgcgtcttcgccgtcgagctcgacaccatcctcaacccgga 78027 Query: 62 gttcggggacatcgacaacaaccatgtcggc 92 |||| |||||||| ||| |||||| |||||| Sbjct: 78028 gttccgggacatcaacagcaaccacgtcggc 78058 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 60 gagttcggggacatcgacaacaaccatgtcggcatagacatcaacagcctcaactc 115 ||||||| ||||||| |||||||||| |||||| | ||| |||||||||||||||| Sbjct: 81461 gagttcgcggacatcaacaacaaccacgtcggcgtcgacgtcaacagcctcaactc 81516
>dbj|AK105860.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-H11, full insert sequence Length = 2262 Score = 77.8 bits (39), Expect = 3e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccga 61 |||||||| ||| | ||||| | ||||||||||||||||||||||||||| ||| | || Sbjct: 472 caacggcaacgccagcaaccgcgtcttcgccgtcgagctcgacaccatcctcaacccgga 531 Query: 62 gttcggggacatcgacaacaaccatgtcggc 92 |||| |||||||| ||| |||||| |||||| Sbjct: 532 gttccgggacatcaacagcaaccacgtcggc 562
>dbj|AK069990.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039H22, full insert sequence Length = 2361 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 28 tcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaaccatg 87 ||||||||||||||||||||||||||| | ||||||| |||||||| || |||||| | Sbjct: 451 tcgccgtcgagctcgacaccatccagagcgtcgagttcagggacatcaacgccaaccacg 510 Query: 88 tcggcatagacatcaacagcctc 110 ||||| | ||||||||| ||||| Sbjct: 511 tcggcgtcgacatcaacggcctc 533 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 211 cgatacaggtctgggtggaataccatgg 238 |||| |||||||||||||| |||||||| Sbjct: 616 cgatgcaggtctgggtggactaccatgg 643
>dbj|AP004301.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0483E09 Length = 69300 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 28 tcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaaccatg 87 ||||||||||||||||||||||||||| | ||||||| |||||||| || |||||| | Sbjct: 34126 tcgccgtcgagctcgacaccatccagagcgtcgagttcagggacatcaacgccaaccacg 34067 Query: 88 tcggcatagacatcaacagcctc 110 ||||| | ||||||||| ||||| Sbjct: 34066 tcggcgtcgacatcaacggcctc 34044 Score = 75.8 bits (38), Expect = 1e-10 Identities = 80/94 (85%) Strand = Plus / Minus Query: 18 aaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgac 77 ||||||||| ||| |||||||||||||||| |||||||| ||||||| | || |||||| Sbjct: 46168 aaccacctcgtcggcgtcgagctcgacaccgaccagaacaacgagttccgtgatatcgac 46109 Query: 78 aacaaccatgtcggcatagacatcaacagcctca 111 |||||| ||||| | |||||||||||||||| Sbjct: 46108 ggcaaccacatcggcgtcgacatcaacagcctca 46075 Score = 60.0 bits (30), Expect = 8e-06 Identities = 72/86 (83%) Strand = Plus / Minus Query: 25 tcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaacc 84 ||||||||||||||||||||||| | ||| | ||||||| | |||||| || |||||| Sbjct: 38437 tcttcgccgtcgagctcgacaccctgcagcaggacgagttccgcgacatcaacgacaacc 38378 Query: 85 atgtcggcatagacatcaacagcctc 110 | |||||| | ||||||||| ||||| Sbjct: 38377 acgtcggcgtcgacatcaacggcctc 38352 Score = 54.0 bits (27), Expect = 5e-04 Identities = 81/99 (81%) Strand = Plus / Minus Query: 17 caaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcga 76 ||||||| | |||||||| || |||||||| ||||||||||||||| | || ||||| Sbjct: 56875 caaccacatgttcgccgtggaaatcgacaccgcccagaacaccgagttggacgatatcga 56816 Query: 77 caacaaccatgtcggcatagacatcaacagcctcaactc 115 | |||| |||||||| ||||||||||||||| |||| Sbjct: 56815 tggctaccacgtcggcatcgacatcaacagcctccactc 56777 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 328 cagtgctcacagaccaagcataccttggcttctc 361 |||||||||| |||||||||||| |||||||||| Sbjct: 56573 cagtgctcactgaccaagcatacattggcttctc 56540 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Minus Query: 314 ctatgacctctcaccagtgctcacagac 341 ||||||||||||| |||||||||||||| Sbjct: 65420 ctatgacctctcaacagtgctcacagac 65393 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 27 ttcgccgtcgagctcgacaccatccagaaca 57 ||||||||||||||||||||| |||| |||| Sbjct: 18248 ttcgccgtcgagctcgacaccttccaaaaca 18218 Score = 44.1 bits (22), Expect = 0.47 Identities = 46/54 (85%) Strand = Plus / Minus Query: 68 ggacatcgacaacaaccatgtcggcatagacatcaacagcctcaactcggtgga 121 ||||||| ||||||||||| |||| | |||||||| ||||| |||||||||| Sbjct: 42728 ggacatcaacaacaaccatatcggtgttgacatcaatggcctccactcggtgga 42675 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 211 cgatacaggtctgggtggaataccatgg 238 |||| |||||||||||||| |||||||| Sbjct: 33961 cgatgcaggtctgggtggactaccatgg 33934
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 77.8 bits (39), Expect = 3e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccga 61 |||||||| ||| | ||||| | ||||||||||||||||||||||||||| ||| | || Sbjct: 15368846 caacggcaacgccagcaaccgcgtcttcgccgtcgagctcgacaccatcctcaacccgga 15368905 Query: 62 gttcggggacatcgacaacaaccatgtcggc 92 |||| |||||||| ||| |||||| |||||| Sbjct: 15368906 gttccgggacatcaacagcaaccacgtcggc 15368936 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 60 gagttcggggacatcgacaacaaccatgtcggcatagacatcaacagcctcaactc 115 ||||||| ||||||| |||||||||| |||||| | ||| |||||||||||||||| Sbjct: 15372339 gagttcgcggacatcaacaacaaccacgtcggcgtcgacgtcaacagcctcaactc 15372394
>ref|XM_476515.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2097 Score = 75.8 bits (38), Expect = 1e-10 Identities = 80/94 (85%) Strand = Plus / Plus Query: 18 aaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgac 77 ||||||||| ||| |||||||||||||||| |||||||| ||||||| | || |||||| Sbjct: 463 aaccacctcgtcggcgtcgagctcgacaccgaccagaacaacgagttccgtgatatcgac 522 Query: 78 aacaaccatgtcggcatagacatcaacagcctca 111 |||||| ||||| | |||||||||||||||| Sbjct: 523 ggcaaccacatcggcgtcgacatcaacagcctca 556
>ref|XM_473280.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2022 Score = 75.8 bits (38), Expect = 1e-10 Identities = 95/114 (83%) Strand = Plus / Plus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccga 61 |||||||| |||||||||||||||||||||||| ||| |||||||||||| ||| | || Sbjct: 405 caacggcaacgcgaccaaccacctcttcgccgtggagttcgacaccatcctcaactcgga 464 Query: 62 gttcggggacatcgacaacaaccatgtcggcatagacatcaacagcctcaactc 115 |||| ||||| | |||||||||||| || ||| ||||| |||||||||| Sbjct: 465 gttcaacgacatgagcggcaaccatgtcgggatcgacgtcaacggcctcaactc 518
>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01, complete sequence Length = 140454 Score = 75.8 bits (38), Expect = 1e-10 Identities = 95/114 (83%) Strand = Plus / Minus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccga 61 |||||||| |||||||||||||||||||||||| ||| |||||||||||| ||| | || Sbjct: 84866 caacggcaacgcgaccaaccacctcttcgccgtggagttcgacaccatcctcaactcgga 84807 Query: 62 gttcggggacatcgacaacaaccatgtcggcatagacatcaacagcctcaactc 115 |||| ||||| | |||||||||||| || ||| ||||| |||||||||| Sbjct: 84806 gttcaacgacatgagcggcaaccatgtcgggatcgacgtcaacggcctcaactc 84753 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 25 tcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaacc 84 ||||||||||||||||||||||||| | ||| | |||||| |||||| ||| ||||| Sbjct: 87211 tcttcgccgtcgagctcgacaccatgctcaacccggagttccaggacatgaacagcaacc 87270 Query: 85 atgtcggcatagacatcaacagc 107 | ||||| | |||||||||||| Sbjct: 87271 acatcggcgtcgacatcaacagc 87293
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 75.8 bits (38), Expect = 1e-10 Identities = 95/114 (83%) Strand = Plus / Minus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccga 61 |||||||| |||||||||||||||||||||||| ||| |||||||||||| ||| | || Sbjct: 26547980 caacggcaacgcgaccaaccacctcttcgccgtggagttcgacaccatcctcaactcgga 26547921 Query: 62 gttcggggacatcgacaacaaccatgtcggcatagacatcaacagcctcaactc 115 |||| ||||| | |||||||||||| || ||| ||||| |||||||||| Sbjct: 26547920 gttcaacgacatgagcggcaaccatgtcgggatcgacgtcaacggcctcaactc 26547867 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 25 tcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaacc 84 ||||||||||||||||||||||||| | ||| | |||||| |||||| ||| ||||| Sbjct: 26550325 tcttcgccgtcgagctcgacaccatgctcaacccggagttccaggacatgaacagcaacc 26550384 Query: 85 atgtcggcatagacatcaacagc 107 | ||||| | |||||||||||| Sbjct: 26550385 acatcggcgtcgacatcaacagc 26550407
>dbj|AK105289.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-F02, full insert sequence Length = 2156 Score = 75.8 bits (38), Expect = 1e-10 Identities = 95/114 (83%) Strand = Plus / Plus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccga 61 |||||||| |||||||||||||||||||||||| ||| |||||||||||| ||| | || Sbjct: 365 caacggcaacgcgaccaaccacctcttcgccgtggagttcgacaccatcctcaactcgga 424 Query: 62 gttcggggacatcgacaacaaccatgtcggcatagacatcaacagcctcaactc 115 |||| ||||| | |||||||||||| || ||| ||||| |||||||||| Sbjct: 425 gttcaacgacatgagcggcaaccatgtcgggatcgacgtcaacggcctcaactc 478
>dbj|AK069319.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018L01, full insert sequence Length = 2293 Score = 75.8 bits (38), Expect = 1e-10 Identities = 80/94 (85%) Strand = Plus / Plus Query: 18 aaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgac 77 ||||||||| ||| |||||||||||||||| |||||||| ||||||| | || |||||| Sbjct: 454 aaccacctcgtcggcgtcgagctcgacaccgaccagaacaacgagttccgtgatatcgac 513 Query: 78 aacaaccatgtcggcatagacatcaacagcctca 111 |||||| ||||| | |||||||||||||||| Sbjct: 514 ggcaaccacatcggcgtcgacatcaacagcctca 547
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 69.9 bits (35), Expect = 8e-09 Identities = 77/91 (84%) Strand = Plus / Minus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccga 61 |||||||| ||||| ||||| | | ||||||||||||||||||||||||| ||| || Sbjct: 7966602 caacggcaacgcgagcaaccgcgtgttcgccgtcgagctcgacaccatccgcaaccagga 7966543 Query: 62 gttcggggacatcgacaacaaccatgtcggc 92 ||||||||||||| || |||||| |||||| Sbjct: 7966542 gttcggggacatcaacggcaaccacgtcggc 7966512 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Minus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacac 46 |||||| | |||| || ||||| |||||||||||||| ||||||| Sbjct: 5646008 caacgggaacgcgtccgaccacgtcttcgccgtcgagttcgacac 5645964 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 cgacaccatccagaacaccg 60 |||||||||||||||||||| Sbjct: 14610050 cgacaccatccagaacaccg 14610069
>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0046H10 Length = 155544 Score = 69.9 bits (35), Expect = 8e-09 Identities = 77/91 (84%) Strand = Plus / Minus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccga 61 |||||||| ||||| ||||| | | ||||||||||||||||||||||||| ||| || Sbjct: 74120 caacggcaacgcgagcaaccgcgtgttcgccgtcgagctcgacaccatccgcaaccagga 74061 Query: 62 gttcggggacatcgacaacaaccatgtcggc 92 ||||||||||||| || |||||| |||||| Sbjct: 74060 gttcggggacatcaacggcaaccacgtcggc 74030
>dbj|AK120208.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013038K24, full insert sequence Length = 2290 Score = 69.9 bits (35), Expect = 8e-09 Identities = 71/83 (85%) Strand = Plus / Plus Query: 28 tcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaaccatg 87 |||||||||||||||||||||| |||||| ||||||| | ||||| || ||| ||||| Sbjct: 496 tcgccgtcgagctcgacaccatgcagaacgacgagttccgcgacattaacgacagccatg 555 Query: 88 tcggcatagacatcaacagcctc 110 | || || ||||||||||||||| Sbjct: 556 ttggaatcgacatcaacagcctc 578
>ref|NM_186226.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1911 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 346 cataccttggcttctcatcctccacaggtttaagcacggggcatcactatgtgcttggtt 405 |||| ||||| ||||||||||| ||||| |||||||| | |||||||| || ||||||| Sbjct: 722 catatcttggtttctcatcctcaacaggcttaagcacagctcatcactacgttcttggtt 781 Query: 406 ggagctttgg 415 |||||||||| Sbjct: 782 ggagctttgg 791 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 60 gagttcggggacatcgacaacaaccatgtcggcatagacat 100 ||||| ||||||||||||||||||||||| ||||| ||||| Sbjct: 454 gagtttggggacatcgacaacaaccatgttggcattgacat 494
>ref|NM_196701.1| Oryza sativa (japonica cultivar-group) putative serine/threonine-specific kinase like protein (OSJNBa0046P18.10), mRNA Length = 2844 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 60 gagttcggggacatcgacaacaaccatgtcggcatagacatcaacagcctcaactc 115 ||||||| ||||||| |||||||||| |||||| | ||| |||||||||||||||| Sbjct: 469 gagttcgcggacatcaacaacaaccacgtcggcgtcgacgtcaacagcctcaactc 524
>dbj|AK071359.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089J23, full insert sequence Length = 2374 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 60 gagttcggggacatcgacaacaaccatgtcggcatagacatcaacagcctcaactc 115 ||||||| ||||||| |||||||||| |||||| | ||| |||||||||||||||| Sbjct: 590 gagttcgcggacatcaacaacaaccacgtcggcgtcgacgtcaacagcctcaactc 645
>ref|NM_184965.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2121 Score = 61.9 bits (31), Expect = 2e-06 Identities = 91/111 (81%) Strand = Plus / Plus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccga 61 |||||||| | | ||||||||| |||||| ||||||||||||||||||| | | |||| Sbjct: 495 caacggcaacaccaccaaccacatcttcggcgtcgagctcgacaccatcgtcagctccga 554 Query: 62 gttcggggacatcgacaacaaccatgtcggcatagacatcaacagcctcaa 112 |||| ||| || ||||||| |||||||| ||||||||||||||||| Sbjct: 555 gttccaggatcctaacgacaaccacgtcggcatcgacatcaacagcctcaa 605
>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence Length = 134496 Score = 61.9 bits (31), Expect = 2e-06 Identities = 91/111 (81%) Strand = Plus / Plus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccga 61 |||||||| | | ||||||||| |||||| ||||||||||||||||||| | | |||| Sbjct: 30164 caacggcaacaccaccaaccacatcttcggcgtcgagctcgacaccatcgtcagctccga 30223 Query: 62 gttcggggacatcgacaacaaccatgtcggcatagacatcaacagcctcaa 112 |||| ||| || ||||||| |||||||| ||||||||||||||||| Sbjct: 30224 gttccaggatcctaacgacaaccacgtcggcatcgacatcaacagcctcaa 30274
>dbj|AK120949.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038D05, full insert sequence Length = 2125 Score = 61.9 bits (31), Expect = 2e-06 Identities = 91/111 (81%) Strand = Plus / Plus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccga 61 |||||||| | | ||||||||| |||||| ||||||||||||||||||| | | |||| Sbjct: 388 caacggcaacaccaccaaccacatcttcggcgtcgagctcgacaccatcgtcagctccga 447 Query: 62 gttcggggacatcgacaacaaccatgtcggcatagacatcaacagcctcaa 112 |||| ||| || ||||||| |||||||| ||||||||||||||||| Sbjct: 448 gttccaggatcctaacgacaaccacgtcggcatcgacatcaacagcctcaa 498
>ref|XM_476512.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2236 Score = 60.0 bits (30), Expect = 8e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 25 tcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaacc 84 ||||||||||||||||||||||| | ||| | ||||||| | |||||| || |||||| Sbjct: 463 tcttcgccgtcgagctcgacaccctgcagcaggacgagttccgcgacatcaacgacaacc 522 Query: 85 atgtcggcatagacatcaacagcctc 110 | |||||| | ||||||||| ||||| Sbjct: 523 acgtcggcgtcgacatcaacggcctc 548
>dbj|AP005200.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0673E01 Length = 125909 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 14 gaccaaccacctcttcgccgtcgagctcgacaccatcc 51 ||||||||||||||||||||| ||| |||||||||||| Sbjct: 116299 gaccaaccacctcttcgccgttgagttcgacaccatcc 116336
>dbj|AP005783.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0095H08 Length = 140777 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 14 gaccaaccacctcttcgccgtcgagctcgacaccatcc 51 ||||||||||||||||||||| ||| |||||||||||| Sbjct: 9233 gaccaaccacctcttcgccgttgagttcgacaccatcc 9270
>dbj|AK068307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013136I11, full insert sequence Length = 2237 Score = 60.0 bits (30), Expect = 8e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 25 tcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaacc 84 ||||||||||||||||||||||| | ||| | ||||||| | |||||| || |||||| Sbjct: 463 tcttcgccgtcgagctcgacaccctgcagcaggacgagttccgcgacatcaacgacaacc 522 Query: 85 atgtcggcatagacatcaacagcctc 110 | |||||| | ||||||||| ||||| Sbjct: 523 acgtcggcgtcgacatcaacggcctc 548
>ref|XM_478203.1| Oryza sativa (japonica cultivar-group), mRNA Length = 387 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 11 cgcgaccaaccacctcttcgccgtcgagctcgacaccatcc 51 |||||||||||||||||||| ||| ||| |||||||||||| Sbjct: 274 cgcgaccaaccacctcttcgtcgttgagttcgacaccatcc 234
>dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1058_B11 Length = 102824 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 11 cgcgaccaaccacctcttcgccgtcgagctcgacaccatcc 51 |||||||||||||||||||| ||| ||| |||||||||||| Sbjct: 2293 cgcgaccaaccacctcttcgtcgttgagttcgacaccatcc 2253
>dbj|AP004266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0038F10 Length = 153929 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 11 cgcgaccaaccacctcttcgccgtcgagctcgacaccatcc 51 |||||||||||||||||||| ||| ||| |||||||||||| Sbjct: 139940 cgcgaccaaccacctcttcgtcgttgagttcgacaccatcc 139900
>ref|XM_476518.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2283 Score = 54.0 bits (27), Expect = 5e-04 Identities = 81/99 (81%) Strand = Plus / Plus Query: 17 caaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcga 76 ||||||| | |||||||| || |||||||| ||||||||||||||| | || ||||| Sbjct: 675 caaccacatgttcgccgtggaaatcgacaccgcccagaacaccgagttggacgatatcga 734 Query: 77 caacaaccatgtcggcatagacatcaacagcctcaactc 115 | |||| |||||||| ||||||||||||||| |||| Sbjct: 735 tggctaccacgtcggcatcgacatcaacagcctccactc 773 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 328 cagtgctcacagaccaagcataccttggcttctc 361 |||||||||| |||||||||||| |||||||||| Sbjct: 977 cagtgctcactgaccaagcatacattggcttctc 1010
>ref|XM_473281.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2040 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 25 tcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaacc 84 ||||||||||||||||||||||||| | ||| | |||||| |||||| ||| ||||| Sbjct: 422 tcttcgccgtcgagctcgacaccatgctcaacccggagttccaggacatgaacagcaacc 481 Query: 85 atgtcggcatagacatcaacagc 107 | ||||| | |||||||||||| Sbjct: 482 acatcggcgtcgacatcaacagc 504
>dbj|AK107678.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-A04, full insert sequence Length = 2366 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 25 tcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaacc 84 ||||||||||||||||||||||||| | ||| | |||||| |||||| ||| ||||| Sbjct: 1810 tcttcgccgtcgagctcgacaccatgctcaacccggagttccaggacatgaacagcaacc 1751 Query: 85 atgtcggcatagacatcaacagc 107 | ||||| | |||||||||||| Sbjct: 1750 acatcggcgtcgacatcaacagc 1728
>dbj|AK102285.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089I06, full insert sequence Length = 2454 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 25 tcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaacc 84 ||||||||||||||||||||||||| | ||| | |||||| |||||| ||| ||||| Sbjct: 637 tcttcgccgtcgagctcgacaccatgctcaacccggagttccaggacatgaacagcaacc 696 Query: 85 atgtcggcatagacatcaacagc 107 | ||||| | |||||||||||| Sbjct: 697 acatcggcgtcgacatcaacagc 719
>dbj|AK068045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135M14, full insert sequence Length = 2658 Score = 54.0 bits (27), Expect = 5e-04 Identities = 81/99 (81%) Strand = Plus / Minus Query: 17 caaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcga 76 ||||||| | |||||||| || |||||||| ||||||||||||||| | || ||||| Sbjct: 2107 caaccacatgttcgccgtggaaatcgacaccgcccagaacaccgagttggacgatatcga 2048 Query: 77 caacaaccatgtcggcatagacatcaacagcctcaactc 115 | |||| |||||||| ||||||||||||||| |||| Sbjct: 2047 tggctaccacgtcggcatcgacatcaacagcctccactc 2009 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 328 cagtgctcacagaccaagcataccttggcttctc 361 |||||||||| |||||||||||| |||||||||| Sbjct: 1805 cagtgctcactgaccaagcatacattggcttctc 1772
>dbj|AK067638.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013109O13, full insert sequence Length = 2275 Score = 54.0 bits (27), Expect = 5e-04 Identities = 81/99 (81%) Strand = Plus / Plus Query: 17 caaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcga 76 ||||||| | |||||||| || |||||||| ||||||||||||||| | || ||||| Sbjct: 497 caaccacatgttcgccgtggaaatcgacaccgcccagaacaccgagttggacgatatcga 556 Query: 77 caacaaccatgtcggcatagacatcaacagcctcaactc 115 | |||| |||||||| ||||||||||||||| |||| Sbjct: 557 tggctaccacgtcggcatcgacatcaacagcctccactc 595 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 328 cagtgctcacagaccaagcataccttggcttctc 361 |||||||||| |||||||||||| |||||||||| Sbjct: 799 cagtgctcactgaccaagcatacattggcttctc 832
>ref|XM_478823.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2183 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Plus Query: 30 gccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaaccatgtc 89 ||||||||||| ||||||||| |||| |||||||| |||||| || |||||| ||| Sbjct: 496 gccgtcgagctggacaccatcatgaaccccgagttccacgacatcagcagcaaccacgtc 555 Query: 90 ggcatagacatcaacagcctca 111 ||||| ||| ||||||||||| Sbjct: 556 ggcatcgacgccaacagcctca 577
>ref|XM_477491.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2010 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 25 tcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatc 74 ||||||| |||||||||||||||||||| |||| ||||| || |||||| Sbjct: 416 tcttcgctgtcgagctcgacaccatccaaaacaaggagtttggcgacatc 465
>gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete sequence Length = 150743 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 79 acaaccatgtcggcatagacatcaacagcctcaa 112 ||||||||||| |||| ||||||||||||||||| Sbjct: 7348 acaaccatgtcagcatcgacatcaacagcctcaa 7315 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Minus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatc 50 |||||||| | | ||||||||| |||||| ||| ||||||||||||||| Sbjct: 7425 caacggcaacacaaccaaccacatcttcggcgttgagctcgacaccatc 7377
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 52.0 bits (26), Expect = 0.002 Identities = 86/106 (81%) Strand = Plus / Minus Query: 5 cggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccgagtt 64 ||||| ||| ||||||||| || |||| || ||| |||||||| | ||| || |||||| Sbjct: 23752857 cggcaacgccaccaaccacgtcctcgcggtggagttcgacaccgtgcaggacttcgagtt 23752798 Query: 65 cggggacatcgacaacaaccatgtcggcatagacatcaacagcctc 110 ||| |||||| | ||||||| |||||| | ||| ||||||||||| Sbjct: 23752797 cggcgacatcaatgacaaccacgtcggcgtcgacctcaacagcctc 23752752
>dbj|AP005100.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0018O23 Length = 142143 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 25 tcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatc 74 ||||||| |||||||||||||||||||| |||| ||||| || |||||| Sbjct: 55659 tcttcgctgtcgagctcgacaccatccaaaacaaggagtttggcgacatc 55610 Score = 46.1 bits (23), Expect = 0.12 Identities = 38/43 (88%) Strand = Plus / Minus Query: 69 gacatcgacaacaaccatgtcggcatagacatcaacagcctca 111 ||||||||||||||||| || || || ||||||||||||||| Sbjct: 49849 gacatcgacaacaaccacgttggaatcaacatcaacagcctca 49807
>dbj|AP005766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0028O21 Length = 134543 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 25 tcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatc 74 ||||||| |||||||||||||||||||| |||| ||||| || |||||| Sbjct: 21275 tcttcgctgtcgagctcgacaccatccaaaacaaggagtttggcgacatc 21226 Score = 46.1 bits (23), Expect = 0.12 Identities = 38/43 (88%) Strand = Plus / Minus Query: 69 gacatcgacaacaaccatgtcggcatagacatcaacagcctca 111 ||||||||||||||||| || || || ||||||||||||||| Sbjct: 15465 gacatcgacaacaaccacgttggaatcaacatcaacagcctca 15423
>dbj|AK110940.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-G10, full insert sequence Length = 1488 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Plus Query: 30 gccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaaccatgtc 89 ||||||||||| ||||||||| |||| |||||||| |||||| || |||||| ||| Sbjct: 631 gccgtcgagctggacaccatcatgaaccccgagttccacgacatcagcagcaaccacgtc 690 Query: 90 ggcatagacatcaacagcctca 111 ||||| ||| ||||||||||| Sbjct: 691 ggcatcgacgccaacagcctca 712
>dbj|AK107444.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-B09, full insert sequence Length = 2141 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Plus Query: 12 gcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggac 71 |||| ||||||| |||| |||||||||||||||||| ||| | | | ||| || ||| Sbjct: 408 gcgagcaaccacgtctttgccgtcgagctcgacaccgtcctcagcccggagctccacgac 467 Query: 72 atcgacaacaaccatgtcggcatagacatcaacagcct 109 || |||| ||||||||||||||| ||| | |||||||| Sbjct: 468 atagacagcaaccatgtcggcattgacgtgaacagcct 505
>dbj|AK101924.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071P06, full insert sequence Length = 2181 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Plus Query: 30 gccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaaccatgtc 89 ||||||||||| ||||||||| |||| |||||||| |||||| || |||||| ||| Sbjct: 494 gccgtcgagctggacaccatcatgaaccccgagttccacgacatcagcagcaaccacgtc 553 Query: 90 ggcatagacatcaacagcctca 111 ||||| ||| ||||||||||| Sbjct: 554 ggcatcgacgccaacagcctca 575
>dbj|AK100114.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006K11, full insert sequence Length = 2883 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Minus Query: 12 gcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggac 71 |||| ||||||| |||| |||||||||||||||||| ||| | | | ||| || ||| Sbjct: 1962 gcgagcaaccacgtctttgccgtcgagctcgacaccgtcctcagcccggagctccacgac 1903 Query: 72 atcgacaacaaccatgtcggcatagacatcaacagcct 109 || |||| ||||||||||||||| ||| | |||||||| Sbjct: 1902 atagacagcaaccatgtcggcattgacgtgaacagcct 1865
>dbj|AK066399.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063L14, full insert sequence Length = 3210 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 328 cagtgctcacagaccaagcataccttggcttctc 361 |||||||||| |||||||||||| |||||||||| Sbjct: 799 cagtgctcactgaccaagcatacattggcttctc 832 Score = 46.1 bits (23), Expect = 0.12 Identities = 80/99 (80%) Strand = Plus / Plus Query: 17 caaccacctcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcga 76 ||||||| | |||||||| || |||||||| |||||||||||||| | || ||||| Sbjct: 497 caaccacatgttcgccgtggaaatcgacaccgcgcagaacaccgagttggacgatatcga 556 Query: 77 caacaaccatgtcggcatagacatcaacagcctcaactc 115 | |||| |||||||| ||||||||||||||| |||| Sbjct: 557 tggctaccacgtcggcatcgacatcaacagcctccactc 595
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 52.0 bits (26), Expect = 0.002 Identities = 86/106 (81%) Strand = Plus / Minus Query: 5 cggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccgagtt 64 ||||| ||| ||||||||| || |||| || ||| |||||||| | ||| || |||||| Sbjct: 23681056 cggcaacgccaccaaccacgtcctcgcggtggagttcgacaccgtgcaggacttcgagtt 23680997 Query: 65 cggggacatcgacaacaaccatgtcggcatagacatcaacagcctc 110 ||| |||||| | ||||||| |||||| | ||| ||||||||||| Sbjct: 23680996 cggcgacatcaatgacaaccacgtcggcgtcgacctcaacagcctc 23680951
>emb|AL844878.4|CNS08CB1 Oryza sativa chromosome 12, . BAC OSJNBb0036A19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128795 Score = 52.0 bits (26), Expect = 0.002 Identities = 86/106 (81%) Strand = Plus / Plus Query: 5 cggcagcgcgaccaaccacctcttcgccgtcgagctcgacaccatccagaacaccgagtt 64 ||||| ||| ||||||||| || |||| || ||| |||||||| | ||| || |||||| Sbjct: 2753 cggcaacgccaccaaccacgtcctcgcggtggagttcgacaccgtgcaggacttcgagtt 2812 Query: 65 cggggacatcgacaacaaccatgtcggcatagacatcaacagcctc 110 ||| |||||| | ||||||| |||||| | ||| ||||||||||| Sbjct: 2813 cggcgacatcaatgacaaccacgtcggcgtcgacctcaacagcctc 2858
>ref|XM_465097.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2049 Score = 50.1 bits (25), Expect = 0.008 Identities = 70/85 (82%) Strand = Plus / Plus Query: 25 tcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaacc 84 ||||||| || ||||| ||||||||| ||||| | || ||| |||||| || ||||| Sbjct: 458 tcttcgcggttgagcttgacaccatcgagaaccctgaattctccgacatcaacggcaacc 517 Query: 85 atgtcggcatagacatcaacagcct 109 |||||||||| |||||||| ||||| Sbjct: 518 atgtcggcatcgacatcaatagcct 542
>dbj|AP005534.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0030M21 Length = 155970 Score = 50.1 bits (25), Expect = 0.008 Identities = 70/85 (82%) Strand = Plus / Plus Query: 25 tcttcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaacc 84 ||||||| || ||||| ||||||||| ||||| | || ||| |||||| || ||||| Sbjct: 53208 tcttcgcggttgagcttgacaccatcgagaaccctgaattctccgacatcaacggcaacc 53267 Query: 85 atgtcggcatagacatcaacagcct 109 |||||||||| |||||||| ||||| Sbjct: 53268 atgtcggcatcgacatcaatagcct 53292
>ref|XM_476520.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2034 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Plus Query: 314 ctatgacctctcaccagtgctcacagac 341 ||||||||||||| |||||||||||||| Sbjct: 684 ctatgacctctcaacagtgctcacagac 711
>ref|XM_477490.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2010 Score = 46.1 bits (23), Expect = 0.12 Identities = 38/43 (88%) Strand = Plus / Plus Query: 69 gacatcgacaacaaccatgtcggcatagacatcaacagcctca 111 ||||||||||||||||| || || || ||||||||||||||| Sbjct: 460 gacatcgacaacaaccacgttggaatcaacatcaacagcctca 502
>ref|XM_476507.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2022 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 27 ttcgccgtcgagctcgacaccatccagaaca 57 ||||||||||||||||||||| |||| |||| Sbjct: 400 ttcgccgtcgagctcgacaccttccaaaaca 430
>gb|AY325816.1| Zea mays BAC clone Z013I05, complete sequence Length = 152337 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 19 accacctcttcgccgtcgagctcgacaccatccagaacaccgagttc 65 |||||||||||| | | ||||||||||||| |||||| || |||||| Sbjct: 10447 accacctcttcggcatggagctcgacaccaaccagaatactgagttc 10493
>ref|NM_125425.1| Arabidopsis thaliana kinase AT5G60320 mRNA, complete cds Length = 2028 Score = 44.1 bits (22), Expect = 0.47 Identities = 34/38 (89%) Strand = Plus / Plus Query: 72 atcgacaacaaccatgtcggcatagacatcaacagcct 109 |||||||| || |||||||| ||||||||||| ||||| Sbjct: 466 atcgacaagaatcatgtcggtatagacatcaaaagcct 503
>ref|XM_476523.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2013 Score = 44.1 bits (22), Expect = 0.47 Identities = 37/42 (88%) Strand = Plus / Plus Query: 66 ggggacatcgacaacaaccatgtcggcatagacatcaacagc 107 ||||||||||| |||||||||| ||||| ||||||||||| Sbjct: 394 ggggacatcgatgacaaccatgttggcatcaacatcaacagc 435
>ref|XM_476514.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2016 Score = 44.1 bits (22), Expect = 0.47 Identities = 46/54 (85%) Strand = Plus / Plus Query: 68 ggacatcgacaacaaccatgtcggcatagacatcaacagcctcaactcggtgga 121 ||||||| ||||||||||| |||| | |||||||| ||||| |||||||||| Sbjct: 462 ggacatcaacaacaaccatatcggtgttgacatcaatggcctccactcggtgga 515
>gb|AC135498.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0010M24, complete sequence Length = 164853 Score = 44.1 bits (22), Expect = 0.47 Identities = 34/38 (89%) Strand = Plus / Plus Query: 14 gaccaaccacctcttcgccgtcgagctcgacaccatcc 51 |||||| |||||||||||||| || |||||||||||| Sbjct: 101284 gaccaatcacctcttcgccgtggaattcgacaccatcc 101321
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.47 Identities = 34/38 (89%) Strand = Plus / Minus Query: 14 gaccaaccacctcttcgccgtcgagctcgacaccatcc 51 |||||| |||||||||||||| || |||||||||||| Sbjct: 9182736 gaccaatcacctcttcgccgtggaattcgacaccatcc 9182699
>gb|AF224263.1|AF224263 Heterodontus francisci Evx2 (evx2), HoxD13 (HoxD13), HoxD12 (HoxD12), HoxD11 (HoxD11), HoxD10 (HoxD10), HoxD9 (HoxD9), HoxD8 (HoxD8), and HoxD5 (HoxD5) genes, complete cds Length = 98786 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 36 gagctcgacaccatccagaaca 57 |||||||||||||||||||||| Sbjct: 9156 gagctcgacaccatccagaaca 9177
>dbj|AB015471.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9B18 Length = 10085 Score = 44.1 bits (22), Expect = 0.47 Identities = 34/38 (89%) Strand = Plus / Plus Query: 72 atcgacaacaaccatgtcggcatagacatcaacagcct 109 |||||||| || |||||||| ||||||||||| ||||| Sbjct: 1858 atcgacaagaatcatgtcggtatagacatcaaaagcct 1895
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.47 Identities = 34/38 (89%) Strand = Plus / Minus Query: 14 gaccaaccacctcttcgccgtcgagctcgacaccatcc 51 |||||| |||||||||||||| || |||||||||||| Sbjct: 9254433 gaccaatcacctcttcgccgtggaattcgacaccatcc 9254396
>ref|XM_450514.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1353 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 25 tcttcgccgtcgagctcgacaccat 49 ||||||||||||| ||||||||||| Sbjct: 1079 tcttcgccgtcgacctcgacaccat 1103
>ref|XM_470803.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1468 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 accaaccacctcttcgccgtc 35 ||||||||||||||||||||| Sbjct: 283 accaaccacctcttcgccgtc 303
>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete sequence Length = 164705 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 accaaccacctcttcgccgtc 35 ||||||||||||||||||||| Sbjct: 31206 accaaccacctcttcgccgtc 31226
>emb|CR932808.1| Mus musculus chromosome 2, clone RPCI-21-370D12 strain 129/Sv, complete sequence Length = 163435 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 408 agctttggaatgggcacccctgctccagt 436 |||||||| |||| ||||||||||||||| Sbjct: 94702 agctttggcatggacacccctgctccagt 94730 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 408 agctttggaatgggcacccctgctccagt 436 |||||||| |||| ||||||||||||||| Sbjct: 94646 agctttggcatggacacccctgctccagt 94674
>gb|AC106714.7| Homo sapiens X BAC RP11-399D20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172543 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 448 ccaaactacccaagctgcctt 468 ||||||||||||||||||||| Sbjct: 26624 ccaaactacccaagctgcctt 26644
>gb|AC112918.3| Homo sapiens X BAC RP11-370L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167503 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 448 ccaaactacccaagctgcctt 468 ||||||||||||||||||||| Sbjct: 150374 ccaaactacccaagctgcctt 150394
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 25 tcttcgccgtcgagctcgacaccat 49 ||||||||||||| ||||||||||| Sbjct: 9407575 tcttcgccgtcgacctcgacaccat 9407599 Score = 40.1 bits (20), Expect = 7.4 Identities = 62/76 (81%) Strand = Plus / Minus Query: 28 tcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaaccatg 87 |||| ||||||||||||||| | ||||||| ||||| ||||| ||| |||| ||||| Sbjct: 5067973 tcgcagtcgagctcgacacctttcagaacaatgagtttggggatatcagtaacagccatg 5067914 Query: 88 tcggcatagacatcaa 103 | ||||| || ||||| Sbjct: 5067913 ttggcattgatatcaa 5067898
>dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0021C04 Length = 162115 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Minus Query: 2 caacggcagcgcgaccaaccacctcttcgccgtcgagctcgacac 46 |||||| | |||| || ||||| |||||||||||||| ||||||| Sbjct: 38155 caacgggaacgcgtccgaccacgtcttcgccgtcgagttcgacac 38111
>dbj|AP005879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0024J13 Length = 127614 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 25 tcttcgccgtcgagctcgacaccat 49 ||||||||||||| ||||||||||| Sbjct: 90989 tcttcgccgtcgacctcgacaccat 91013
>dbj|AB125302.1| Oryza sativa (japonica cultivar-group) SAPK1 mRNA for serine/threonine protein kinase SAPK1, complete cds Length = 1471 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 accaaccacctcttcgccgtc 35 ||||||||||||||||||||| Sbjct: 312 accaaccacctcttcgccgtc 332
>dbj|AK121146.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078D12, full insert sequence Length = 3881 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 accaaccacctcttcgccgtc 35 ||||||||||||||||||||| Sbjct: 293 accaaccacctcttcgccgtc 313
>dbj|AK068899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001G01, full insert sequence Length = 1674 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 accaaccacctcttcgccgtc 35 ||||||||||||||||||||| Sbjct: 293 accaaccacctcttcgccgtc 313
>dbj|AK060856.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-F03, full insert sequence Length = 1390 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 accaaccacctcttcgccgtc 35 ||||||||||||||||||||| Sbjct: 250 accaaccacctcttcgccgtc 270
>emb|AL844538.9| Mouse DNA sequence from clone RP23-289K19 on chromosome 2, complete sequence Length = 180252 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 408 agctttggaatgggcacccctgctccagt 436 |||||||| |||| ||||||||||||||| Sbjct: 27247 agctttggcatggacacccctgctccagt 27219 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 408 agctttggaatgggcacccctgctccagt 436 |||||||| |||| ||||||||||||||| Sbjct: 27191 agctttggcatggacacccctgctccagt 27163
>gb|BC089887.1| Rattus norvegicus, mRNA (cDNA clone MGC:109057 IMAGE:7371502), complete cds Length = 3140 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 cagtgctcacagaccaagca 347 |||||||||||||||||||| Sbjct: 1179 cagtgctcacagaccaagca 1198
>ref|XM_450381.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2007 Score = 40.1 bits (20), Expect = 7.4 Identities = 62/76 (81%) Strand = Plus / Plus Query: 28 tcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaaccatg 87 |||| ||||||||||||||| | ||||||| ||||| ||||| ||| |||| ||||| Sbjct: 413 tcgcagtcgagctcgacacctttcagaacaatgagtttggggatatcagtaacagccatg 472 Query: 88 tcggcatagacatcaa 103 | ||||| || ||||| Sbjct: 473 ttggcattgatatcaa 488
>gb|AC113901.7| Rattus norvegicus 2 BAC CH230-328F5 (Children's Hospital Oakland Research Institute) complete sequence Length = 157435 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 cagtgctcacagaccaagca 347 |||||||||||||||||||| Sbjct: 8136 cagtgctcacagaccaagca 8155
>gb|AC113957.8| Mus musculus chromosome 15, clone RP23-452M1, complete sequence Length = 168824 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 tctatgacctctcaccagtg 332 |||||||||||||||||||| Sbjct: 155563 tctatgacctctcaccagtg 155582
>gb|AC084390.1| Mus musculus BAC clone RP23-285H9 from 1, complete sequence Length = 177050 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 319 acctctcaccagtgctcacagaccaagc 346 ||||||||| ||||||||||| |||||| Sbjct: 74499 acctctcactagtgctcacagcccaagc 74526
>gb|AY321329.1| Rattus norvegicus Ac2-061 mRNA, complete cds Length = 2294 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 cagtgctcacagaccaagca 347 |||||||||||||||||||| Sbjct: 563 cagtgctcacagaccaagca 582
>gb|AY310142.1| Rattus norvegicus Ac1133 mRNA, complete cds Length = 2299 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 cagtgctcacagaccaagca 347 |||||||||||||||||||| Sbjct: 568 cagtgctcacagaccaagca 587
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 ccacctcttcgccgtcgagc 39 |||||||||||||||||||| Sbjct: 2938790 ccacctcttcgccgtcgagc 2938809
>ref|NM_001034912.1| Rattus norvegicus hypothetical protein LOC619558 (LOC619558), mRNA Length = 3140 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 cagtgctcacagaccaagca 347 |||||||||||||||||||| Sbjct: 1179 cagtgctcacagaccaagca 1198
>gb|AC090523.1|AC090523 Caenorhabditis briggsae cosmid CB015N01, complete sequence Length = 98319 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 ctcgacaccatccagaacac 58 |||||||||||||||||||| Sbjct: 1377 ctcgacaccatccagaacac 1358
>emb|BX465202.4| Zebrafish DNA sequence from clone CH211-191G24 in linkage group 2, complete sequence Length = 170771 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 atgggcacccctgctccagt 436 |||||||||||||||||||| Sbjct: 88113 atgggcacccctgctccagt 88094
>dbj|AP005829.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1008E06 Length = 170228 Score = 40.1 bits (20), Expect = 7.4 Identities = 62/76 (81%) Strand = Plus / Minus Query: 28 tcgccgtcgagctcgacaccatccagaacaccgagttcggggacatcgacaacaaccatg 87 |||| ||||||||||||||| | ||||||| ||||| ||||| ||| |||| ||||| Sbjct: 70090 tcgcagtcgagctcgacacctttcagaacaatgagtttggggatatcagtaacagccatg 70031 Query: 88 tcggcatagacatcaa 103 | ||||| || ||||| Sbjct: 70030 ttggcattgatatcaa 70015
>dbj|AP005914.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0027A16 Length = 129953 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 cgacaccatccagaacaccg 60 |||||||||||||||||||| Sbjct: 64311 cgacaccatccagaacaccg 64330
>emb|AL928674.5| Zebrafish DNA sequence from clone CH211-10E2, complete sequence Length = 205118 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 atgggcacccctgctccagt 436 |||||||||||||||||||| Sbjct: 124977 atgggcacccctgctccagt 124958
>gb|AF068135.1|AF068135 Glycine max receptor-like protein kinase gene, partial cds Length = 828 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 63 ttcggggacatcgacaacaaccatgtcggcat 94 ||||| |||||| || |||||||||||||||| Sbjct: 334 ttcggagacatcaacgacaaccatgtcggcat 365
>emb|AL772338.9| Mouse DNA sequence from clone RP23-47A6 on chromosome 4, complete sequence Length = 235366 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 agcagggaggatgacggcat 178 |||||||||||||||||||| Sbjct: 99317 agcagggaggatgacggcat 99336 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,813,428 Number of Sequences: 3902068 Number of extensions: 3813428 Number of successful extensions: 67328 Number of sequences better than 10.0: 110 Number of HSP's better than 10.0 without gapping: 119 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66301 Number of HSP's gapped (non-prelim): 1015 length of query: 545 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 522 effective length of database: 17,143,297,704 effective search space: 8948801401488 effective search space used: 8948801401488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
