ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah63d19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X51608.1|TAPRKGEN Triticum aestivum RNA for phosphoribulokinase 260 1e-66
2emb|X57952.1|TAPRK T.aestivum PRK gene for ribulose-5-phosphate ... 260 1e-66
3ref|XM_467296.1| Oryza sativa (japonica cultivar-group), mRNA 172 2e-40
4ref|XM_507520.1| PREDICTED Oryza sativa (japonica cultivar-group... 172 2e-40
5ref|XM_506922.2| PREDICTED Oryza sativa (japonica cultivar-group... 172 2e-40
6gb|AF543191.1| Oryza sativa (indica cultivar-group) phosphoribul... 172 2e-40
7gb|AF529237.2| Oryza sativa (indica cultivar-group) phosphoribul... 172 2e-40
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 172 2e-40
9dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic D... 172 2e-40
10dbj|AK104857.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 2e-40
11dbj|AK099461.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 2e-40
12dbj|AK066164.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 5e-38
13gb|AY106347.1| Zea mays PCO092382 mRNA sequence 125 4e-26
14emb|Y11248.1|PSPHOBKIN P.sativum mRNA for phosphoribulokinase, p... 62 5e-07
15gb|BC086910.1| Mus musculus secretoglobin, family 3A, member 1, ... 40 1.9
16gb|DQ226798.1| Boechera divaricarpa isolate SLW-B-C10 mRNA sequence 40 1.9
17gb|AF233439.7| Homo sapiens chromosome 8 clones GS1-24F4, CTD-26... 40 1.9
18gb|AF205406.5| Homo sapiens chromosome 8 clone SCb-633e22 map p2... 40 1.9
19gb|AF298854.5| Homo sapiens chromosome 8 clone SCb-207i3 map p23... 40 1.9
20gb|AC121932.2| Mus musculus BAC clone RP24-205N24 from 17, compl... 40 1.9
21emb|AL606479.16| Mouse DNA sequence from clone RP23-10G21 on chr... 40 1.9
22gb|AC079018.10| Homo sapiens chromosome 8, clone RP11-161B1, com... 40 1.9
23dbj|AK127831.1| Homo sapiens cDNA FLJ45934 fis, clone PLACE7003684 40 1.9
24dbj|AK003988.1| Mus musculus 18-day embryo whole body cDNA, RIKE... 40 1.9
25gb|AF313457.1| Mus musculus UGRP2 type B mRNA, complete cds 40 1.9
26gb|AF313456.1| Mus musculus UGRP2 type A mRNA, complete cds 40 1.9
27ref|NM_054037.1| Mus musculus secretoglobin, family 3A, member 1... 40 1.9
28ref|NM_170727.1| Mus musculus secretoglobin, family 3A, member 1... 40 1.9
29gb|AC150398.3| Branchiostoma floridae clone CH302-18L14, complet... 38 7.6
30gb|AC005364.1| Homo sapiens chromosome 16, cosmid clone 53H2 (LA... 38 7.6
31gb|AC005347.1| Homo sapiens chromosome 16, cosmid clone 308C6 (L... 38 7.6
32gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 38 7.6
33gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 38 7.6
34gb|AC134537.3| Mus musculus BAC clone RP24-388M1 from chromosome... 38 7.6
35gb|AC125361.4| Mus musculus BAC clone RP23-93M7 from chromosome ... 38 7.6
36gb|AC161816.5| Mus musculus BAC clone RP23-308L3 from chromosome... 38 7.6
37dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.6
38gb|AC011235.4| Homo sapiens BAC clone RP11-295A19 from 2, comple... 38 7.6
39gb|AC142452.5| Mus musculus BAC clone RP24-266E20 from 3, comple... 38 7.6
40gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 7.6 
>emb|X51608.1|TAPRKGEN Triticum aestivum RNA for phosphoribulokinase
          Length = 1533

 Score =  260 bits (131), Expect = 1e-66
 Identities = 150/158 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccacccaaggncggcancccagactngaacacgctnatcagcgacacaacgacggnca 60
           |||||||||||| ||||| ||||||||  |||||||| ||||||||||| ||||||| ||
Sbjct: 324 agccacccaagggcggcaacccagactccaacacgctcatcagcgacacgacgacggtca 383

                                                                       
Query: 61  tatgccttgatgactaccattccttggacagaaccgggaggaaggagaaaggtgtgactg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 384 tatgccttgatgactaccattccttggacagaaccgggaggaaggagaaaggtgtgaccg 443

                                                 
Query: 121 ccctggaccccaaggcaaacgactttgatctcatgtat 158
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccctggaccccaaggcaaacgactttgatctcatgtat 481
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>emb|X57952.1|TAPRK T.aestivum PRK gene for ribulose-5-phosphate kinase
          Length = 2501

 Score =  260 bits (131), Expect = 1e-66
 Identities = 150/158 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccacccaaggncggcancccagactngaacacgctnatcagcgacacaacgacggnca 60
           |||||||||||| ||||| ||||||||  |||||||| ||||||||||| ||||||| ||
Sbjct: 483 agccacccaagggcggcaacccagactccaacacgctcatcagcgacacgacgacggtca 542

                                                                       
Query: 61  tatgccttgatgactaccattccttggacagaaccgggaggaaggagaaaggtgtgactg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 543 tatgccttgatgactaccattccttggacagaaccgggaggaaggagaaaggtgtgaccg 602

                                                 
Query: 121 ccctggaccccaaggcaaacgactttgatctcatgtat 158
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ccctggaccccaaggcaaacgactttgatctcatgtat 640
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>ref|XM_467296.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1494

 Score =  172 bits (87), Expect = 2e-40
 Identities = 139/158 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccacccaaggncggcancccagactngaacacgctnatcagcgacacaacgacggnca 60
           ||||||||||||  |||| ||||||||  ||||| || ||||| ||||| || ||||  |
Sbjct: 276 agccacccaagggtggcaacccagactcaaacacactcatcagtgacacgacaacggtga 335

                                                                       
Query: 61  tatgccttgatgactaccattccttggacagaaccgggaggaaggagaaaggtgtgactg 120
           ||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 336 tatgcctcgatgactaccattccttggacaggactggcaggaaggagaaaggtgtgactg 395

                                                 
Query: 121 ccctggaccccaaggcaaacgactttgatctcatgtat 158
           |||||||||| | ||||||||| |||||||||||||||
Sbjct: 396 ccctggaccctagggcaaacgattttgatctcatgtat 433
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>ref|XM_507520.1| PREDICTED Oryza sativa (japonica cultivar-group), P0459B01.11 mRNA
          Length = 1556

 Score =  172 bits (87), Expect = 2e-40
 Identities = 139/158 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccacccaaggncggcancccagactngaacacgctnatcagcgacacaacgacggnca 60
           ||||||||||||  |||| ||||||||  ||||| || ||||| ||||| || ||||  |
Sbjct: 318 agccacccaagggtggcaacccagactcaaacacactcatcagtgacacgacaacggtga 377

                                                                       
Query: 61  tatgccttgatgactaccattccttggacagaaccgggaggaaggagaaaggtgtgactg 120
           ||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 378 tatgcctcgatgactaccattccttggacaggactggcaggaaggagaaaggtgtgactg 437

                                                 
Query: 121 ccctggaccccaaggcaaacgactttgatctcatgtat 158
           |||||||||| | ||||||||| |||||||||||||||
Sbjct: 438 ccctggaccctagggcaaacgattttgatctcatgtat 475
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>ref|XM_506922.2| PREDICTED Oryza sativa (japonica cultivar-group), P0459B01.11 mRNA
          Length = 1626

 Score =  172 bits (87), Expect = 2e-40
 Identities = 139/158 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccacccaaggncggcancccagactngaacacgctnatcagcgacacaacgacggnca 60
           ||||||||||||  |||| ||||||||  ||||| || ||||| ||||| || ||||  |
Sbjct: 410 agccacccaagggtggcaacccagactcaaacacactcatcagtgacacgacaacggtga 469

                                                                       
Query: 61  tatgccttgatgactaccattccttggacagaaccgggaggaaggagaaaggtgtgactg 120
           ||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 470 tatgcctcgatgactaccattccttggacaggactggcaggaaggagaaaggtgtgactg 529

                                                 
Query: 121 ccctggaccccaaggcaaacgactttgatctcatgtat 158
           |||||||||| | ||||||||| |||||||||||||||
Sbjct: 530 ccctggaccctagggcaaacgattttgatctcatgtat 567
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>gb|AF543191.1| Oryza sativa (indica cultivar-group) phosphoribulokinase precursor
           gene, complete cds
          Length = 2443

 Score =  172 bits (87), Expect = 2e-40
 Identities = 139/158 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccacccaaggncggcancccagactngaacacgctnatcagcgacacaacgacggnca 60
           ||||||||||||  |||| ||||||||  ||||| || ||||| ||||| || ||||  |
Sbjct: 422 agccacccaagggtggcaacccagactcaaacacactcatcagtgacacgacaacggtga 481

                                                                       
Query: 61  tatgccttgatgactaccattccttggacagaaccgggaggaaggagaaaggtgtgactg 120
           ||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 482 tatgcctcgatgactaccattccttggacaggactggcaggaaggagaaaggtgtgactg 541

                                                 
Query: 121 ccctggaccccaaggcaaacgactttgatctcatgtat 158
           |||||||||| | ||||||||| |||||||||||||||
Sbjct: 542 ccctggaccctagggcaaacgattttgatctcatgtat 579
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>gb|AF529237.2| Oryza sativa (indica cultivar-group) phosphoribulokinase precursor
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1663

 Score =  172 bits (87), Expect = 2e-40
 Identities = 139/158 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccacccaaggncggcancccagactngaacacgctnatcagcgacacaacgacggnca 60
           ||||||||||||  |||| ||||||||  ||||| || ||||| ||||| || ||||  |
Sbjct: 422 agccacccaagggtggcaacccagactcaaacacactcatcagtgacacgacaacggtga 481

                                                                       
Query: 61  tatgccttgatgactaccattccttggacagaaccgggaggaaggagaaaggtgtgactg 120
           ||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 482 tatgcctcgatgactaccattccttggacaggactggcaggaaggagaaaggtgtgactg 541

                                                 
Query: 121 ccctggaccccaaggcaaacgactttgatctcatgtat 158
           |||||||||| | ||||||||| |||||||||||||||
Sbjct: 542 ccctggaccctagggcaaacgattttgatctcatgtat 579
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  172 bits (87), Expect = 2e-40
 Identities = 139/158 (87%)
 Strand = Plus / Plus

                                                                            
Query: 1        agccacccaaggncggcancccagactngaacacgctnatcagcgacacaacgacggnca 60
                ||||||||||||  |||| ||||||||  ||||| || ||||| ||||| || ||||  |
Sbjct: 28720764 agccacccaagggtggcaacccagactcaaacacactcatcagtgacacgacaacggtga 28720823

                                                                            
Query: 61       tatgccttgatgactaccattccttggacagaaccgggaggaaggagaaaggtgtgactg 120
                ||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 28720824 tatgcctcgatgactaccattccttggacaggactggcaggaaggagaaaggtgtgactg 28720883

                                                      
Query: 121      ccctggaccccaaggcaaacgactttgatctcatgtat 158
                |||||||||| | ||||||||| |||||||||||||||
Sbjct: 28720884 ccctggaccctagggcaaacgattttgatctcatgtat 28720921
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>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0459B01
          Length = 163087

 Score =  172 bits (87), Expect = 2e-40
 Identities = 139/158 (87%)
 Strand = Plus / Plus

                                                                         
Query: 1     agccacccaaggncggcancccagactngaacacgctnatcagcgacacaacgacggnca 60
             ||||||||||||  |||| ||||||||  ||||| || ||||| ||||| || ||||  |
Sbjct: 37337 agccacccaagggtggcaacccagactcaaacacactcatcagtgacacgacaacggtga 37396

                                                                         
Query: 61    tatgccttgatgactaccattccttggacagaaccgggaggaaggagaaaggtgtgactg 120
             ||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 37397 tatgcctcgatgactaccattccttggacaggactggcaggaaggagaaaggtgtgactg 37456

                                                   
Query: 121   ccctggaccccaaggcaaacgactttgatctcatgtat 158
             |||||||||| | ||||||||| |||||||||||||||
Sbjct: 37457 ccctggaccctagggcaaacgattttgatctcatgtat 37494
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>dbj|AK104857.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-C08, full
           insert sequence
          Length = 1494

 Score =  172 bits (87), Expect = 2e-40
 Identities = 139/158 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccacccaaggncggcancccagactngaacacgctnatcagcgacacaacgacggnca 60
           ||||||||||||  |||| ||||||||  ||||| || ||||| ||||| || ||||  |
Sbjct: 276 agccacccaagggtggcaacccagactcaaacacactcatcagtgacacgacaacggtga 335

                                                                       
Query: 61  tatgccttgatgactaccattccttggacagaaccgggaggaaggagaaaggtgtgactg 120
           ||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 336 tatgcctcgatgactaccattccttggacaggactggcaggaaggagaaaggtgtgactg 395

                                                 
Query: 121 ccctggaccccaaggcaaacgactttgatctcatgtat 158
           |||||||||| | ||||||||| |||||||||||||||
Sbjct: 396 ccctggaccctagggcaaacgattttgatctcatgtat 433
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>dbj|AK099461.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023E19, full
           insert sequence
          Length = 1625

 Score =  172 bits (87), Expect = 2e-40
 Identities = 139/158 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccacccaaggncggcancccagactngaacacgctnatcagcgacacaacgacggnca 60
           ||||||||||||  |||| ||||||||  ||||| || ||||| ||||| || ||||  |
Sbjct: 409 agccacccaagggtggcaacccagactcaaacacactcatcagtgacacgacaacggtga 468

                                                                       
Query: 61  tatgccttgatgactaccattccttggacagaaccgggaggaaggagaaaggtgtgactg 120
           ||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 469 tatgcctcgatgactaccattccttggacaggactggcaggaaggagaaaggtgtgactg 528

                                                 
Query: 121 ccctggaccccaaggcaaacgactttgatctcatgtat 158
           |||||||||| | ||||||||| |||||||||||||||
Sbjct: 529 ccctggaccctagggcaaacgattttgatctcatgtat 566
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>dbj|AK066164.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056N04, full
           insert sequence
          Length = 1555

 Score =  165 bits (83), Expect = 5e-38
 Identities = 138/158 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccacccaaggncggcancccagactngaacacgctnatcagcgacacaacgacggnca 60
           ||||||||||||  |||| ||||||||  ||||| || || || ||||| || ||||  |
Sbjct: 318 agccacccaagggtggcaacccagactcaaacacactcatgagtgacacgacaacggtga 377

                                                                       
Query: 61  tatgccttgatgactaccattccttggacagaaccgggaggaaggagaaaggtgtgactg 120
           ||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 378 tatgcctcgatgactaccattccttggacaggactggcaggaaggagaaaggtgtgactg 437

                                                 
Query: 121 ccctggaccccaaggcaaacgactttgatctcatgtat 158
           |||||||||| | ||||||||| |||||||||||||||
Sbjct: 438 ccctggaccctagggcaaacgattttgatctcatgtat 475
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>gb|AY106347.1| Zea mays PCO092382 mRNA sequence
          Length = 1513

 Score =  125 bits (63), Expect = 4e-26
 Identities = 133/158 (84%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccacccaaggncggcancccagactngaacacgctnatcagcgacacaacgacggnca 60
           |||| ||||||| ||| | ||| ||||  |||||||| ||||| ||||| ||||| |  |
Sbjct: 308 agccgcccaagggcgggaacccggactccaacacgctcatcagtgacaccacgacagtga 367

                                                                       
Query: 61  tatgccttgatgactaccattccttggacagaaccgggaggaaggagaaaggtgtgactg 120
           ||||||| || |||||||||||| ||||||| | ||| |||||||||||||||||||| |
Sbjct: 368 tatgcctcgacgactaccattccctggacaggaacggcaggaaggagaaaggtgtgaccg 427

                                                 
Query: 121 ccctggaccccaaggcaaacgactttgatctcatgtat 158
           |||| ||||| | ||| ||| |||||||||||||||||
Sbjct: 428 ccctcgaccctagggccaacaactttgatctcatgtat 465
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>emb|Y11248.1|PSPHOBKIN P.sativum mRNA for phosphoribulokinase, partial
          Length = 1313

 Score = 61.9 bits (31), Expect = 5e-07
 Identities = 104/129 (80%)
 Strand = Plus / Plus

                                                                       
Query: 30  aacacgctnatcagcgacacaacgacggncatatgccttgatgactaccattccttggac 89
           ||||| || ||||| |||||||| || | ||||||  | ||||| || ||||| ||||| 
Sbjct: 134 aacacacttatcagtgacacaacaactgtcatatgtttggatgattatcattctttggat 193

                                                                       
Query: 90  agaaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgat 149
           |||||||| || || ||||||||||| ||||| || || || || || || || ||||||
Sbjct: 194 agaaccggtagaaaagagaaaggtgttactgcacttgatccaaaagctaatgattttgat 253

                    
Query: 150 ctcatgtat 158
           |||||||||
Sbjct: 254 ctcatgtat 262
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>gb|BC086910.1| Mus musculus secretoglobin, family 3A, member 1, transcript variant
           A, mRNA (cDNA clone MGC:107611 IMAGE:6759656), complete
           cds
          Length = 508

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 98  gaggaaggagaaaggtgtga 117
           ||||||||||||||||||||
Sbjct: 461 gaggaaggagaaaggtgtga 442
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>gb|DQ226798.1| Boechera divaricarpa isolate SLW-B-C10 mRNA sequence
          Length = 517

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 51/62 (82%)
 Strand = Plus / Plus

                                                                       
Query: 30  aacacgctnatcagcgacacaacgacggncatatgccttgatgactaccattccttggac 89
           ||||| || ||||||||||| || || |  || || ||||| || |||||||||||||||
Sbjct: 73  aacacactcatcagcgacacgaccaccgtgatctgtcttgacgattaccattccttggac 132

             
Query: 90  ag 91
           ||
Sbjct: 133 ag 134
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>gb|AF233439.7| Homo sapiens chromosome 8 clones GS1-24F4, CTD-2629I16 map p23.1,
             complete sequences
          Length = 231283

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    gaggaaggagaaaggtgtga 117
             ||||||||||||||||||||
Sbjct: 78568 gaggaaggagaaaggtgtga 78587
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>gb|AF205406.5| Homo sapiens chromosome 8 clone SCb-633e22 map p23.1, complete sequence
          Length = 168907

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    gaggaaggagaaaggtgtga 117
             ||||||||||||||||||||
Sbjct: 31267 gaggaaggagaaaggtgtga 31286
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>gb|AF298854.5| Homo sapiens chromosome 8 clone SCb-207i3 map p23.1, complete sequence
          Length = 110283

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    gaggaaggagaaaggtgtga 117
             ||||||||||||||||||||
Sbjct: 41295 gaggaaggagaaaggtgtga 41314
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>gb|AC121932.2| Mus musculus BAC clone RP24-205N24 from 17, complete sequence
          Length = 152782

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    aggaaggagaaaggtgtgac 118
             ||||||||||||||||||||
Sbjct: 62792 aggaaggagaaaggtgtgac 62811
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>emb|AL606479.16| Mouse DNA sequence from clone RP23-10G21 on chromosome 11 Contains
            the Scgb3a1 gene for family 3A member 1 secretoglobin,
            gene A230103N10Rik, a ribosomal protein L30 (Rpl30)
            pseudogene, a ribosomal protein S10 (Rps10) pseudogene, a
            ribosomal protein L29 (Rpl29) pseudogene, the Gfpt2 gene
            for glutamine fructose-6-phosphate transaminase 2, the
            Mapk9 gene for mitogen activated protein kinase 9, the 5'
            end of gene 9130006A14Rik and four CpG islands, complete
            sequence
          Length = 254981

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   gaggaaggagaaaggtgtga 117
            ||||||||||||||||||||
Sbjct: 4264 gaggaaggagaaaggtgtga 4245
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>gb|AC079018.10| Homo sapiens chromosome 8, clone RP11-161B1, complete sequence
          Length = 168702

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    gaggaaggagaaaggtgtga 117
             ||||||||||||||||||||
Sbjct: 12621 gaggaaggagaaaggtgtga 12640
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>dbj|AK127831.1| Homo sapiens cDNA FLJ45934 fis, clone PLACE7003684
          Length = 3658

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 98   gaggaaggagaaaggtgtga 117
            ||||||||||||||||||||
Sbjct: 3560 gaggaaggagaaaggtgtga 3579
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>dbj|AK003988.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length
           enriched library, clone:1110030K16 product:uteroglobin
           related protein 2, full insert sequence
          Length = 495

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 98  gaggaaggagaaaggtgtga 117
           ||||||||||||||||||||
Sbjct: 466 gaggaaggagaaaggtgtga 447
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>gb|AF313457.1| Mus musculus UGRP2 type B mRNA, complete cds
          Length = 630

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 98  gaggaaggagaaaggtgtga 117
           ||||||||||||||||||||
Sbjct: 569 gaggaaggagaaaggtgtga 550
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>gb|AF313456.1| Mus musculus UGRP2 type A mRNA, complete cds
          Length = 525

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 98  gaggaaggagaaaggtgtga 117
           ||||||||||||||||||||
Sbjct: 464 gaggaaggagaaaggtgtga 445
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>ref|NM_054037.1| Mus musculus secretoglobin, family 3A, member 1 (Scgb3a1),
           transcript variant A, mRNA
          Length = 525

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 98  gaggaaggagaaaggtgtga 117
           ||||||||||||||||||||
Sbjct: 464 gaggaaggagaaaggtgtga 445
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>ref|NM_170727.1| Mus musculus secretoglobin, family 3A, member 1 (Scgb3a1),
           transcript variant B, mRNA
          Length = 630

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 98  gaggaaggagaaaggtgtga 117
           ||||||||||||||||||||
Sbjct: 569 gaggaaggagaaaggtgtga 550
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>gb|AC150398.3| Branchiostoma floridae clone CH302-18L14, complete sequence
          Length = 163878

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 130   ccaaggcaaacgactttga 148
             |||||||||||||||||||
Sbjct: 93750 ccaaggcaaacgactttga 93768
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>gb|AC005364.1| Homo sapiens chromosome 16, cosmid clone 53H2 (LANL), complete
            sequence
          Length = 36342

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 96   gggaggaaggagaaaggtg 114
            |||||||||||||||||||
Sbjct: 2070 gggaggaaggagaaaggtg 2052
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>gb|AC005347.1| Homo sapiens chromosome 16, cosmid clone 308C6 (LANL), complete
             sequence
          Length = 35828

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 96    gggaggaaggagaaaggtg 114
             |||||||||||||||||||
Sbjct: 22859 gggaggaaggagaaaggtg 22841
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>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0003C04 map S10003, complete sequence
          Length = 119238

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 96    gggaggaaggagaaaggtgtgac 118
             ||||||||||||||||| |||||
Sbjct: 96541 gggaggaaggagaaaggggtgac 96563
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>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 96    gggaggaaggagaaaggtgtgac 118
             ||||||||||||||||| |||||
Sbjct: 18422 gggaggaaggagaaaggggtgac 18444
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>gb|AC134537.3| Mus musculus BAC clone RP24-388M1 from chromosome 12, complete sequence
          Length = 221662

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 100   ggaaggagaaaggtgtgac 118
             |||||||||||||||||||
Sbjct: 11953 ggaaggagaaaggtgtgac 11971
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>gb|AC125361.4| Mus musculus BAC clone RP23-93M7 from chromosome 12, complete sequence
          Length = 202234

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 100   ggaaggagaaaggtgtgac 118
             |||||||||||||||||||
Sbjct: 44025 ggaaggagaaaggtgtgac 44007
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>gb|AC161816.5| Mus musculus BAC clone RP23-308L3 from chromosome 16, complete sequence
          Length = 213324

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 98     gaggaaggagaaaggtgtg 116
              |||||||||||||||||||
Sbjct: 171626 gaggaaggagaaaggtgtg 171608
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 96       gggaggaaggagaaaggtgtgac 118
                ||||||||||||||||| |||||
Sbjct: 28291741 gggaggaaggagaaaggggtgac 28291763
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>gb|AC011235.4| Homo sapiens BAC clone RP11-295A19 from 2, complete sequence
          Length = 184042

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   aggaaggagaaaggtgtga 117
            |||||||||||||||||||
Sbjct: 5970 aggaaggagaaaggtgtga 5988
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>gb|AC142452.5| Mus musculus BAC clone RP24-266E20 from 3, complete sequence
          Length = 149936

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 107   gaaaggtgtgactgccctg 125
             |||||||||||||||||||
Sbjct: 56250 gaaaggtgtgactgccctg 56268
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 96       gggaggaaggagaaaggtgtgac 118
                ||||||||||||||||| |||||
Sbjct: 28274190 gggaggaaggagaaaggggtgac 28274212


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 943,586
Number of Sequences: 3902068
Number of extensions: 943586
Number of successful extensions: 70638
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70533
Number of HSP's gapped (non-prelim): 105
length of query: 158
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 136
effective length of database: 17,147,199,772
effective search space: 2332019168992
effective search space used: 2332019168992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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