Clone Name | bah62o19 |
---|---|
Clone Library Name | barley_pub |
>gb|AY107617.1| Zea mays PCO084394 mRNA sequence Length = 1016 Score = 361 bits (182), Expect = 2e-96 Identities = 236/254 (92%) Strand = Plus / Plus Query: 326 ctgctggtggacggggtgtcgtccatctgcgcactggacttccgcatggacgagtggggc 385 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 73 ctgctggtggacggcgtgtcgtccatctgcgcgctggacttccgcatggacgagtggggc 132 Query: 386 gtggacgtggcgctgacggggtcgcagaaggcgctgtcgctgccgacggggctgggaatc 445 |||||||||||||| ||||| |||||||||||||||||| ||||||||||| |||| ||| Sbjct: 133 gtggacgtggcgctcacgggctcgcagaaggcgctgtcgatgccgacggggatgggcatc 192 Query: 446 gtgtgcgccagccccaaggcgctggaggcggccaagacggccaagtcggtgcgcgtcttc 505 |||||||||||||||| |||||||||||| ||||||||||| ||| |||||||||||| Sbjct: 193 gtgtgcgccagccccagggcgctggaggccagcaagacggccaggtccgtgcgcgtcttc 252 Query: 506 ttcgactggaaggactacctcaagttctacaagatgggcacctactggccctacacgccg 565 |||||||||||||||||||||| ||||||| | |||||||| ||||||||||||||||| Sbjct: 253 ttcgactggaaggactacctcaggttctacgacatgggcacgtactggccctacacgccc 312 Query: 566 tccatccagctcct 579 |||||||||||||| Sbjct: 313 tccatccagctcct 326
>ref|XM_483211.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1507 Score = 357 bits (180), Expect = 3e-95 Identities = 264/292 (90%) Strand = Plus / Plus Query: 40 ggactacatgaatgggccaggccggaaccacctgttcgtccctgggccggtgaacatccc 99 ||||||| || ||||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct: 90 ggactacgtgtatgggccggggcggaaccacctgttcgtgcctgggccggtgaacatccc 149 Query: 100 ggaccaggtgatccgcgccatgagcaggcagaacgaggactaccgctcgccggcgatccc 159 ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| | || Sbjct: 150 ggaccaggtgatccgcgccatgagccgtcagaacgaggactaccgctcgccggcggtgcc 209 Query: 160 tgccctcaccaagaccctcctggaggacgtgaagaagatcttcaagaccaccaccggcac 219 |||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| Sbjct: 210 cgccctcaccaagaccctcctcgaggacgtcaagcagatcttcaagaccaccaccggcac 269 Query: 220 ccccttcctcttccccaccaccggcaccggcgcctgggagagcgcgctcaccaacacgct 279 |||||||||||||||||||||||| || || || |||||||||||||| || |||||||| Sbjct: 270 ccccttcctcttccccaccaccgggacgggggcgtgggagagcgcgctgacgaacacgct 329 Query: 280 ctccccgggggaccggatcgtgtccttctcgctggggcagttcagcctgctg 331 || ||||||||| ||||||||| ||| | | |||||||||||||||||| Sbjct: 330 gtcgccgggggacaagatcgtgtcgttcctgatcgggcagttcagcctgctg 381 Score = 355 bits (179), Expect = 1e-94 Identities = 233/251 (92%) Strand = Plus / Plus Query: 329 ctggtggacggggtgtcgtccatctgcgcactggacttccgcatggacgagtggggcgtg 388 ||||||||||||||||| || || || || |||||||||||||||| |||||||| ||| Sbjct: 604 ctggtggacggggtgtcatcgatatgtgcgttggacttccgcatggatgagtggggagtg 663 Query: 389 gacgtggcgctgacggggtcgcagaaggcgctgtcgctgccgacggggctgggaatcgtg 448 ||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||| Sbjct: 664 gacgtggcgctgacgggttcgcagaaggcgctctcgctgccgacgggtctgggcatcgtg 723 Query: 449 tgcgccagccccaaggcgctggaggcggccaagacggccaagtcggtgcgcgtcttcttc 508 ||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 724 tgcgcgagccccaaggcgctggaggcgagcaagacggccaagtcggtgcgggtcttcttc 783 Query: 509 gactggaaggactacctcaagttctacaagatgggcacctactggccctacacgccgtcc 568 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 784 gactggaaggactacctcaagttctacaagatgggcacctactggccctacaccccatcc 843 Query: 569 atccagctcct 579 ||||||||||| Sbjct: 844 atccagctcct 854
>ref|XM_507283.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1345_D02.38 mRNA Length = 1567 Score = 357 bits (180), Expect = 3e-95 Identities = 264/292 (90%) Strand = Plus / Plus Query: 40 ggactacatgaatgggccaggccggaaccacctgttcgtccctgggccggtgaacatccc 99 ||||||| || ||||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct: 82 ggactacgtgtatgggccggggcggaaccacctgttcgtgcctgggccggtgaacatccc 141 Query: 100 ggaccaggtgatccgcgccatgagcaggcagaacgaggactaccgctcgccggcgatccc 159 ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| | || Sbjct: 142 ggaccaggtgatccgcgccatgagccgtcagaacgaggactaccgctcgccggcggtgcc 201 Query: 160 tgccctcaccaagaccctcctggaggacgtgaagaagatcttcaagaccaccaccggcac 219 |||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| Sbjct: 202 cgccctcaccaagaccctcctcgaggacgtcaagcagatcttcaagaccaccaccggcac 261 Query: 220 ccccttcctcttccccaccaccggcaccggcgcctgggagagcgcgctcaccaacacgct 279 |||||||||||||||||||||||| || || || |||||||||||||| || |||||||| Sbjct: 262 ccccttcctcttccccaccaccgggacgggggcgtgggagagcgcgctgacgaacacgct 321 Query: 280 ctccccgggggaccggatcgtgtccttctcgctggggcagttcagcctgctg 331 || ||||||||| ||||||||| ||| | | |||||||||||||||||| Sbjct: 322 gtcgccgggggacaagatcgtgtcgttcctgatcgggcagttcagcctgctg 373 Score = 355 bits (179), Expect = 1e-94 Identities = 233/251 (92%) Strand = Plus / Plus Query: 329 ctggtggacggggtgtcgtccatctgcgcactggacttccgcatggacgagtggggcgtg 388 ||||||||||||||||| || || || || |||||||||||||||| |||||||| ||| Sbjct: 596 ctggtggacggggtgtcatcgatatgtgcgttggacttccgcatggatgagtggggagtg 655 Query: 389 gacgtggcgctgacggggtcgcagaaggcgctgtcgctgccgacggggctgggaatcgtg 448 ||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||| Sbjct: 656 gacgtggcgctgacgggttcgcagaaggcgctctcgctgccgacgggtctgggcatcgtg 715 Query: 449 tgcgccagccccaaggcgctggaggcggccaagacggccaagtcggtgcgcgtcttcttc 508 ||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 716 tgcgcgagccccaaggcgctggaggcgagcaagacggccaagtcggtgcgggtcttcttc 775 Query: 509 gactggaaggactacctcaagttctacaagatgggcacctactggccctacacgccgtcc 568 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 776 gactggaaggactacctcaagttctacaagatgggcacctactggccctacaccccatcc 835 Query: 569 atccagctcct 579 ||||||||||| Sbjct: 836 atccagctcct 846
>dbj|AK065126.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P06, full insert sequence Length = 1507 Score = 357 bits (180), Expect = 3e-95 Identities = 264/292 (90%) Strand = Plus / Plus Query: 40 ggactacatgaatgggccaggccggaaccacctgttcgtccctgggccggtgaacatccc 99 ||||||| || ||||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct: 90 ggactacgtgtatgggccggggcggaaccacctgttcgtgcctgggccggtgaacatccc 149 Query: 100 ggaccaggtgatccgcgccatgagcaggcagaacgaggactaccgctcgccggcgatccc 159 ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| | || Sbjct: 150 ggaccaggtgatccgcgccatgagccgtcagaacgaggactaccgctcgccggcggtgcc 209 Query: 160 tgccctcaccaagaccctcctggaggacgtgaagaagatcttcaagaccaccaccggcac 219 |||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| Sbjct: 210 cgccctcaccaagaccctcctcgaggacgtcaagcagatcttcaagaccaccaccggcac 269 Query: 220 ccccttcctcttccccaccaccggcaccggcgcctgggagagcgcgctcaccaacacgct 279 |||||||||||||||||||||||| || || || |||||||||||||| || |||||||| Sbjct: 270 ccccttcctcttccccaccaccgggacgggggcgtgggagagcgcgctgacgaacacgct 329 Query: 280 ctccccgggggaccggatcgtgtccttctcgctggggcagttcagcctgctg 331 || ||||||||| ||||||||| ||| | | |||||||||||||||||| Sbjct: 330 gtcgccgggggacaagatcgtgtcgttcctgatcgggcagttcagcctgctg 381 Score = 355 bits (179), Expect = 1e-94 Identities = 233/251 (92%) Strand = Plus / Plus Query: 329 ctggtggacggggtgtcgtccatctgcgcactggacttccgcatggacgagtggggcgtg 388 ||||||||||||||||| || || || || |||||||||||||||| |||||||| ||| Sbjct: 604 ctggtggacggggtgtcatcgatatgtgcgttggacttccgcatggatgagtggggagtg 663 Query: 389 gacgtggcgctgacggggtcgcagaaggcgctgtcgctgccgacggggctgggaatcgtg 448 ||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||| Sbjct: 664 gacgtggcgctgacgggttcgcagaaggcgctctcgctgccgacgggtctgggcatcgtg 723 Query: 449 tgcgccagccccaaggcgctggaggcggccaagacggccaagtcggtgcgcgtcttcttc 508 ||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 724 tgcgcgagccccaaggcgctggaggcgagcaagacggccaagtcggtgcgggtcttcttc 783 Query: 509 gactggaaggactacctcaagttctacaagatgggcacctactggccctacacgccgtcc 568 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 784 gactggaaggactacctcaagttctacaagatgggcacctactggccctacaccccatcc 843 Query: 569 atccagctcct 579 ||||||||||| Sbjct: 844 atccagctcct 854
>dbj|AK064774.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000A23, full insert sequence Length = 1567 Score = 357 bits (180), Expect = 3e-95 Identities = 264/292 (90%) Strand = Plus / Plus Query: 40 ggactacatgaatgggccaggccggaaccacctgttcgtccctgggccggtgaacatccc 99 ||||||| || ||||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct: 82 ggactacgtgtatgggccggggcggaaccacctgttcgtgcctgggccggtgaacatccc 141 Query: 100 ggaccaggtgatccgcgccatgagcaggcagaacgaggactaccgctcgccggcgatccc 159 ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| | || Sbjct: 142 ggaccaggtgatccgcgccatgagccgtcagaacgaggactaccgctcgccggcggtgcc 201 Query: 160 tgccctcaccaagaccctcctggaggacgtgaagaagatcttcaagaccaccaccggcac 219 |||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| Sbjct: 202 cgccctcaccaagaccctcctcgaggacgtcaagcagatcttcaagaccaccaccggcac 261 Query: 220 ccccttcctcttccccaccaccggcaccggcgcctgggagagcgcgctcaccaacacgct 279 |||||||||||||||||||||||| || || || |||||||||||||| || |||||||| Sbjct: 262 ccccttcctcttccccaccaccgggacgggggcgtgggagagcgcgctgacgaacacgct 321 Query: 280 ctccccgggggaccggatcgtgtccttctcgctggggcagttcagcctgctg 331 || ||||||||| ||||||||| ||| | | |||||||||||||||||| Sbjct: 322 gtcgccgggggacaagatcgtgtcgttcctgatcgggcagttcagcctgctg 373 Score = 347 bits (175), Expect = 3e-92 Identities = 232/251 (92%) Strand = Plus / Plus Query: 329 ctggtggacggggtgtcgtccatctgcgcactggacttccgcatggacgagtggggcgtg 388 ||||||||||||||||| || || || || |||||||||||||||| |||||||| ||| Sbjct: 596 ctggtggacggggtgtcatcgatatgtgcgttggacttccgcatggatgagtggggagtg 655 Query: 389 gacgtggcgctgacggggtcgcagaaggcgctgtcgctgccgacggggctgggaatcgtg 448 ||||||||||||||||| |||||||||||||| ||||||||||| || ||||| |||||| Sbjct: 656 gacgtggcgctgacgggttcgcagaaggcgctctcgctgccgacaggtctgggcatcgtg 715 Query: 449 tgcgccagccccaaggcgctggaggcggccaagacggccaagtcggtgcgcgtcttcttc 508 ||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 716 tgcgcgagccccaaggcgctggaggcgagcaagacggccaagtcggtgcgggtcttcttc 775 Query: 509 gactggaaggactacctcaagttctacaagatgggcacctactggccctacacgccgtcc 568 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 776 gactggaaggactacctcaagttctacaagatgggcacctactggccctacaccccatcc 835 Query: 569 atccagctcct 579 ||||||||||| Sbjct: 836 atccagctcct 846
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 355 bits (179), Expect = 1e-94 Identities = 233/251 (92%) Strand = Plus / Minus Query: 329 ctggtggacggggtgtcgtccatctgcgcactggacttccgcatggacgagtggggcgtg 388 ||||||||||||||||| || || || || |||||||||||||||| |||||||| ||| Sbjct: 24822057 ctggtggacggggtgtcatcgatatgtgcgttggacttccgcatggatgagtggggagtg 24821998 Query: 389 gacgtggcgctgacggggtcgcagaaggcgctgtcgctgccgacggggctgggaatcgtg 448 ||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||| Sbjct: 24821997 gacgtggcgctgacgggttcgcagaaggcgctctcgctgccgacgggtctgggcatcgtg 24821938 Query: 449 tgcgccagccccaaggcgctggaggcggccaagacggccaagtcggtgcgcgtcttcttc 508 ||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 24821937 tgcgcgagccccaaggcgctggaggcgagcaagacggccaagtcggtgcgggtcttcttc 24821878 Query: 509 gactggaaggactacctcaagttctacaagatgggcacctactggccctacacgccgtcc 568 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 24821877 gactggaaggactacctcaagttctacaagatgggcacctactggccctacaccccatcc 24821818 Query: 569 atccagctcct 579 ||||||||||| Sbjct: 24821817 atccagctcct 24821807 Score = 301 bits (152), Expect = 1e-78 Identities = 191/204 (93%) Strand = Plus / Minus Query: 40 ggactacatgaatgggccaggccggaaccacctgttcgtccctgggccggtgaacatccc 99 ||||||| || ||||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct: 24822869 ggactacgtgtatgggccggggcggaaccacctgttcgtgcctgggccggtgaacatccc 24822810 Query: 100 ggaccaggtgatccgcgccatgagcaggcagaacgaggactaccgctcgccggcgatccc 159 ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| | || Sbjct: 24822809 ggaccaggtgatccgcgccatgagccgtcagaacgaggactaccgctcgccggcggtgcc 24822750 Query: 160 tgccctcaccaagaccctcctggaggacgtgaagaagatcttcaagaccaccaccggcac 219 |||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| Sbjct: 24822749 cgccctcaccaagaccctcctcgaggacgtcaagcagatcttcaagaccaccaccggcac 24822690 Query: 220 ccccttcctcttccccaccaccgg 243 |||||||||||||||||||||||| Sbjct: 24822689 ccccttcctcttccccaccaccgg 24822666 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 254 tgggagagcgcgctcaccaacacgctctccccgggggaccggatcgtgtccttctcgctg 313 |||||||||||||| || |||||||| || ||||||||| ||||||||| ||| | | Sbjct: 24822452 tgggagagcgcgctgacgaacacgctgtcgccgggggacaagatcgtgtcgttcctgatc 24822393 Query: 314 gggcagttcagcctgctg 331 |||||||||||||||||| Sbjct: 24822392 gggcagttcagcctgctg 24822375
>dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1345_D02 Length = 159613 Score = 355 bits (179), Expect = 1e-94 Identities = 233/251 (92%) Strand = Plus / Minus Query: 329 ctggtggacggggtgtcgtccatctgcgcactggacttccgcatggacgagtggggcgtg 388 ||||||||||||||||| || || || || |||||||||||||||| |||||||| ||| Sbjct: 122858 ctggtggacggggtgtcatcgatatgtgcgttggacttccgcatggatgagtggggagtg 122799 Query: 389 gacgtggcgctgacggggtcgcagaaggcgctgtcgctgccgacggggctgggaatcgtg 448 ||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||| Sbjct: 122798 gacgtggcgctgacgggttcgcagaaggcgctctcgctgccgacgggtctgggcatcgtg 122739 Query: 449 tgcgccagccccaaggcgctggaggcggccaagacggccaagtcggtgcgcgtcttcttc 508 ||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 122738 tgcgcgagccccaaggcgctggaggcgagcaagacggccaagtcggtgcgggtcttcttc 122679 Query: 509 gactggaaggactacctcaagttctacaagatgggcacctactggccctacacgccgtcc 568 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 122678 gactggaaggactacctcaagttctacaagatgggcacctactggccctacaccccatcc 122619 Query: 569 atccagctcct 579 ||||||||||| Sbjct: 122618 atccagctcct 122608 Score = 301 bits (152), Expect = 1e-78 Identities = 191/204 (93%) Strand = Plus / Minus Query: 40 ggactacatgaatgggccaggccggaaccacctgttcgtccctgggccggtgaacatccc 99 ||||||| || ||||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct: 123670 ggactacgtgtatgggccggggcggaaccacctgttcgtgcctgggccggtgaacatccc 123611 Query: 100 ggaccaggtgatccgcgccatgagcaggcagaacgaggactaccgctcgccggcgatccc 159 ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| | || Sbjct: 123610 ggaccaggtgatccgcgccatgagccgtcagaacgaggactaccgctcgccggcggtgcc 123551 Query: 160 tgccctcaccaagaccctcctggaggacgtgaagaagatcttcaagaccaccaccggcac 219 |||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| Sbjct: 123550 cgccctcaccaagaccctcctcgaggacgtcaagcagatcttcaagaccaccaccggcac 123491 Query: 220 ccccttcctcttccccaccaccgg 243 |||||||||||||||||||||||| Sbjct: 123490 ccccttcctcttccccaccaccgg 123467 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 254 tgggagagcgcgctcaccaacacgctctccccgggggaccggatcgtgtccttctcgctg 313 |||||||||||||| || |||||||| || ||||||||| ||||||||| ||| | | Sbjct: 123253 tgggagagcgcgctgacgaacacgctgtcgccgggggacaagatcgtgtcgttcctgatc 123194 Query: 314 gggcagttcagcctgctg 331 |||||||||||||||||| Sbjct: 123193 gggcagttcagcctgctg 123176
>dbj|AP004190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1506_F01 Length = 121202 Score = 355 bits (179), Expect = 1e-94 Identities = 233/251 (92%) Strand = Plus / Minus Query: 329 ctggtggacggggtgtcgtccatctgcgcactggacttccgcatggacgagtggggcgtg 388 ||||||||||||||||| || || || || |||||||||||||||| |||||||| ||| Sbjct: 26503 ctggtggacggggtgtcatcgatatgtgcgttggacttccgcatggatgagtggggagtg 26444 Query: 389 gacgtggcgctgacggggtcgcagaaggcgctgtcgctgccgacggggctgggaatcgtg 448 ||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||| Sbjct: 26443 gacgtggcgctgacgggttcgcagaaggcgctctcgctgccgacgggtctgggcatcgtg 26384 Query: 449 tgcgccagccccaaggcgctggaggcggccaagacggccaagtcggtgcgcgtcttcttc 508 ||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 26383 tgcgcgagccccaaggcgctggaggcgagcaagacggccaagtcggtgcgggtcttcttc 26324 Query: 509 gactggaaggactacctcaagttctacaagatgggcacctactggccctacacgccgtcc 568 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 26323 gactggaaggactacctcaagttctacaagatgggcacctactggccctacaccccatcc 26264 Query: 569 atccagctcct 579 ||||||||||| Sbjct: 26263 atccagctcct 26253 Score = 301 bits (152), Expect = 1e-78 Identities = 191/204 (93%) Strand = Plus / Minus Query: 40 ggactacatgaatgggccaggccggaaccacctgttcgtccctgggccggtgaacatccc 99 ||||||| || ||||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct: 27315 ggactacgtgtatgggccggggcggaaccacctgttcgtgcctgggccggtgaacatccc 27256 Query: 100 ggaccaggtgatccgcgccatgagcaggcagaacgaggactaccgctcgccggcgatccc 159 ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| | || Sbjct: 27255 ggaccaggtgatccgcgccatgagccgtcagaacgaggactaccgctcgccggcggtgcc 27196 Query: 160 tgccctcaccaagaccctcctggaggacgtgaagaagatcttcaagaccaccaccggcac 219 |||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| Sbjct: 27195 cgccctcaccaagaccctcctcgaggacgtcaagcagatcttcaagaccaccaccggcac 27136 Query: 220 ccccttcctcttccccaccaccgg 243 |||||||||||||||||||||||| Sbjct: 27135 ccccttcctcttccccaccaccgg 27112 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 254 tgggagagcgcgctcaccaacacgctctccccgggggaccggatcgtgtccttctcgctg 313 |||||||||||||| || |||||||| || ||||||||| ||||||||| ||| | | Sbjct: 26898 tgggagagcgcgctgacgaacacgctgtcgccgggggacaagatcgtgtcgttcctgatc 26839 Query: 314 gggcagttcagcctgctg 331 |||||||||||||||||| Sbjct: 26838 gggcagttcagcctgctg 26821
>dbj|AK099206.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049F20, full insert sequence Length = 1321 Score = 355 bits (179), Expect = 1e-94 Identities = 233/251 (92%) Strand = Plus / Plus Query: 329 ctggtggacggggtgtcgtccatctgcgcactggacttccgcatggacgagtggggcgtg 388 ||||||||||||||||| || || || || |||||||||||||||| |||||||| ||| Sbjct: 370 ctggtggacggggtgtcatcgatatgtgcgttggacttccgcatggatgagtggggagtg 429 Query: 389 gacgtggcgctgacggggtcgcagaaggcgctgtcgctgccgacggggctgggaatcgtg 448 ||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||| Sbjct: 430 gacgtggcgctgacgggttcgcagaaggcgctctcgctgccgacgggtctgggcatcgtg 489 Query: 449 tgcgccagccccaaggcgctggaggcggccaagacggccaagtcggtgcgcgtcttcttc 508 ||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 490 tgcgcgagccccaaggcgctggaggcgagcaagacggccaagtcggtgcgggtcttcttc 549 Query: 509 gactggaaggactacctcaagttctacaagatgggcacctactggccctacacgccgtcc 568 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 550 gactggaaggactacctcaagttctacaagatgggcacctactggccctacaccccatcc 609 Query: 569 atccagctcct 579 ||||||||||| Sbjct: 610 atccagctcct 620 Score = 157 bits (79), Expect = 5e-35 Identities = 130/147 (88%) Strand = Plus / Plus Query: 185 gacgtgaagaagatcttcaagaccaccaccggcacccccttcctcttccccaccaccggc 244 ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gacgtcaagcagatcttcaagaccaccaccggcacccccttcctcttccccaccaccggg 60 Query: 245 accggcgcctgggagagcgcgctcaccaacacgctctccccgggggaccggatcgtgtcc 304 || || || |||||||||||||| || |||||||| || ||||||||| ||||||||| Sbjct: 61 acgggggcgtgggagagcgcgctgacgaacacgctgtcgccgggggacaagatcgtgtcg 120 Query: 305 ttctcgctggggcagttcagcctgctg 331 ||| | | |||||||||||||||||| Sbjct: 121 ttcctgatcgggcagttcagcctgctg 147
>gb|DQ177463.1| Spirodela polyrrhiza serine-glyoxylate aminotransferase mRNA, complete cds Length = 1378 Score = 232 bits (117), Expect = 1e-57 Identities = 213/245 (86%) Strand = Plus / Plus Query: 326 ctgctggtggacggggtgtcgtccatctgcgcactggacttccgcatggacgagtggggc 385 |||||||| ||||| |||||||| || ||||| || |||||||| |||||||||||||| Sbjct: 549 ctgctggttgacggagtgtcgtcaatatgcgcgctcgacttccgtatggacgagtggggg 608 Query: 386 gtggacgtggcgctgacggggtcgcagaaggcgctgtcgctgccgacggggctgggaatc 445 ||||||||||| |||||||| || |||||||| || |||||||| || ||| |||| ||| Sbjct: 609 gtggacgtggcactgacgggatctcagaaggccctctcgctgcccactgggatgggcatc 668 Query: 446 gtgtgcgccagccccaaggcgctggaggcggccaagacggccaagtcggtgcgcgtcttc 505 || |||||||||||||||||||||||||| ||||||| || |||||||| | || || Sbjct: 669 gtctgcgccagccccaaggcgctggaggcttccaagaccgctaagtcggtaagagtgttt 728 Query: 506 ttcgactggaaggactacctcaagttctacaagatgggcacctactggccctacacgccg 565 ||||||||||| |||||||||||||||||||||||||| || |||||||| ||||| ||| Sbjct: 729 ttcgactggaacgactacctcaagttctacaagatggggacttactggccgtacaccccg 788 Query: 566 tccat 570 ||||| Sbjct: 789 tccat 793 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Plus Query: 63 ggaaccacctgttcgtccctgggccggtgaacatcccggaccaggtgatccgcgccatga 122 ||||||| || || ||||| || || ||||||||||| || | |||||| |||||||||| Sbjct: 61 ggaaccatctctttgtcccgggacccgtgaacatcccagagccggtgatacgcgccatga 120 Query: 123 gcaggcagaacgaggactaccg 144 ||| | |||||||||||||| Sbjct: 121 acagaaacaacgaggactaccg 142
>gb|L34038.1|RICRMSO Oryza sativa manganese superoxide dismutase (rmsod1) mRNA, complete cds Length = 951 Score = 85.7 bits (43), Expect = 1e-13 Identities = 49/51 (96%) Strand = Plus / Plus Query: 529 gttctacaagatgggcacctactggccctacacgccgtccatccagctcct 579 ||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 4 gttctacaagatgggcacctactggccctacaccccatccatccagctcct 54
>ref|NM_179620.1| Arabidopsis thaliana AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE) AT2G13360 (AGT) transcript variant AT2G13360.2 mRNA, complete cds Length = 1470 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 326 ctgctggtggacggggtgtcgtccatctgcgcactggacttccgcatggacgagtggggc 385 ||||| |||||||| || |||||||||||||| || || ||||| ||||| |||||||| Sbjct: 605 ctgctagtggacggtgtttcgtccatctgcgcgcttgatttccgaatggatgagtgggga 664 Query: 386 gtggacgtggcgctgacggggtcgcagaa 414 ||||||||||| |||| ||||| ||||| Sbjct: 665 gtggacgtggccttgactgggtctcagaa 693
>ref|NM_126925.2| Arabidopsis thaliana AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE) AT2G13360 (AGT) transcript variant AT2G13360.1 mRNA, complete cds Length = 1492 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 326 ctgctggtggacggggtgtcgtccatctgcgcactggacttccgcatggacgagtggggc 385 ||||| |||||||| || |||||||||||||| || || ||||| ||||| |||||||| Sbjct: 627 ctgctagtggacggtgtttcgtccatctgcgcgcttgatttccgaatggatgagtgggga 686 Query: 386 gtggacgtggcgctgacggggtcgcagaa 414 ||||||||||| |||| ||||| ||||| Sbjct: 687 gtggacgtggccttgactgggtctcagaa 715
>gb|AY142550.1| Arabidopsis thaliana clone RAFL08-11-L01 (R11180) mRNA sequence Length = 2348 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 326 ctgctggtggacggggtgtcgtccatctgcgcactggacttccgcatggacgagtggggc 385 ||||| |||||||| || |||||||||||||| || || ||||| ||||| |||||||| Sbjct: 1542 ctgctagtggacggtgtttcgtccatctgcgcgcttgatttccgaatggatgagtgggga 1601 Query: 386 gtggacgtggcgctgacggggtcgcagaa 414 ||||||||||| |||| ||||| ||||| Sbjct: 1602 gtggacgtggccttgactgggtctcagaa 1630
>gb|AY114010.1| Arabidopsis thaliana putative alanine-glyoxylate aminotransferase (At2g13360) mRNA, complete cds Length = 1237 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 326 ctgctggtggacggggtgtcgtccatctgcgcactggacttccgcatggacgagtggggc 385 ||||| |||||||| || |||||||||||||| || || ||||| ||||| |||||||| Sbjct: 514 ctgctagtggacggtgtttcgtccatctgcgcgcttgatttccgaatggatgagtgggga 573 Query: 386 gtggacgtggcgctgacggggtcgcagaa 414 ||||||||||| |||| ||||| ||||| Sbjct: 574 gtggacgtggccttgactgggtctcagaa 602
>gb|AY096498.1| Arabidopsis thaliana putative alanine-glyoxylate aminotransferase (At2g13360) mRNA, complete cds Length = 1450 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 326 ctgctggtggacggggtgtcgtccatctgcgcactggacttccgcatggacgagtggggc 385 ||||| |||||||| || |||||||||||||| || || ||||| ||||| |||||||| Sbjct: 582 ctgctagtggacggtgtttcgtccatctgcgcgcttgatttccgaatggatgagtgggga 641 Query: 386 gtggacgtggcgctgacggggtcgcagaa 414 ||||||||||| |||| ||||| ||||| Sbjct: 642 gtggacgtggccttgactgggtctcagaa 670
>gb|AC007209.6| Arabidopsis thaliana chromosome 2 clone F14O4 map PR1, complete sequence Length = 55345 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 326 ctgctggtggacggggtgtcgtccatctgcgcactggacttccgcatggacgagtggggc 385 ||||| |||||||| || |||||||||||||| || || ||||| ||||| |||||||| Sbjct: 47255 ctgctagtggacggtgtttcgtccatctgcgcgcttgatttccgaatggatgagtgggga 47314 Query: 386 gtggacgtggcgctgacggggtcgcagaa 414 ||||||||||| |||| ||||| ||||| Sbjct: 47315 gtggacgtggccttgactgggtctcagaa 47343
>gb|AY089195.1| Arabidopsis thaliana clone 8306 mRNA, complete sequence Length = 1449 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 326 ctgctggtggacggggtgtcgtccatctgcgcactggacttccgcatggacgagtggggc 385 ||||| |||||||| || |||||||||||||| || || ||||| ||||| |||||||| Sbjct: 584 ctgctagtggacggtgtttcgtccatctgcgcgcttgatttccgaatggatgagtgggga 643 Query: 386 gtggacgtggcgctgacggggtcgcagaa 414 ||||||||||| |||| ||||| ||||| Sbjct: 644 gtggacgtggccttgactgggtctcagaa 672
>gb|AF063901.1|AF063901 Arabidopsis thaliana alanine:glyoxylate aminotransferase (AGT) mRNA, complete cds Length = 1452 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 326 ctgctggtggacggggtgtcgtccatctgcgcactggacttccgcatggacgagtggggc 385 ||||| |||||||| || |||||||||||||| || || ||||| ||||| |||||||| Sbjct: 584 ctgctagtggacggtgtttcgtccatctgcgcgcttgatttccgaatggatgagtgggga 643 Query: 386 gtggacgtggcgctgacggggtcgcagaa 414 ||||||||||| |||| ||||| ||||| Sbjct: 644 gtggacgtggccttgactgggtctcagaa 672
>dbj|AB048945.1| Arabidopsis thaliana mRNA for serine glyoxylate aminotransferase, complete cds Length = 1424 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 326 ctgctggtggacggggtgtcgtccatctgcgcactggacttccgcatggacgagtggggc 385 ||||| |||||||| || |||||||||||||| || || ||||| ||||| |||||||| Sbjct: 573 ctgctagtggacggtgtttcgtccatctgcgcgcttgatttccgaatggatgagtgggga 632 Query: 386 gtggacgtggcgctgacggggtcgcagaa 414 ||||||||||| |||| ||||| ||||| Sbjct: 633 gtggacgtggccttgactgggtctcagaa 661
>gb|AF039000.1|AF039000 Fritillaria agrestis putative serine-glyoxylate aminotransferase (SGA) mRNA, complete cds Length = 1487 Score = 69.9 bits (35), Expect = 9e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 503 ttcttcgactggaaggactacctcaagttctacaagatgggcacctactggccctacacg 562 |||||||||||||| |||||||| ||||| ||||| || || || |||||||||||||| Sbjct: 809 ttcttcgactggaatgactacctaaagttttacaaaattggtacttactggccctacaca 868 Query: 563 ccgtccatcca 573 || |||||||| Sbjct: 869 ccttccatcca 879 Score = 44.1 bits (22), Expect = 0.50 Identities = 88/110 (80%) Strand = Plus / Plus Query: 35 aagatggactacatgaatgggccaggccggaaccacctgttcgtccctgggccggtgaac 94 |||||||||||| | ||||||| || |||||||||| || || || ||||| |||||| Sbjct: 116 aagatggactacgtctatgggcctgggaggaaccacctttttgttccagggccagtgaac 175 Query: 95 atcccggaccaggtgatccgcgccatgagcaggcagaacgaggactaccg 144 ||||| || | ||||| || || |||| |||| | ||||| |||||||| Sbjct: 176 atccctgagcccgtgattcgtgcgatgaacaggaacaacgaagactaccg 225
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 462 aggcgctggaggcggccaagacggccaag 490 ||||||||||||||||||||||||||||| Sbjct: 263943 aggcgctggaggcggccaagacggccaag 263915
>gb|AY354209.1| Cucumis melo Hemed aminotransferase 2 mRNA, complete cds Length = 1436 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 503 ttcttcgactggaaggactacctcaagttctacaagatgggcacctactggccctacacg 562 ||||| |||||||||||||| ||||||||||| || | || || |||||||| ||||| Sbjct: 897 ttctttgactggaaggactatctcaagttctataacttaggaacatactggccttacact 956 Query: 563 ccgtccatcca 573 || |||||||| Sbjct: 957 ccttccatcca 967
>gb|AY354207.1| Cucumis melo Ananas Yokneam aminotransferase 2 mRNA, complete cds Length = 1230 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 503 ttcttcgactggaaggactacctcaagttctacaagatgggcacctactggccctacacg 562 ||||| |||||||||||||| ||||||||||| || | || || |||||||| ||||| Sbjct: 691 ttctttgactggaaggactatctcaagttctataacttaggaacatactggccttacact 750 Query: 563 ccgtccatcca 573 || |||||||| Sbjct: 751 ccttccatcca 761
>gb|AF461048.1| Cucumis melo aminotransferase 2 mRNA, complete cds Length = 1543 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 503 ttcttcgactggaaggactacctcaagttctacaagatgggcacctactggccctacacg 562 ||||| |||||||||||||| ||||||||||| || | || || |||||||| ||||| Sbjct: 820 ttctttgactggaaggactatctcaagttctataacttaggaacatactggccttacact 879 Query: 563 ccgtccatcca 573 || |||||||| Sbjct: 880 ccttccatcca 890
>gb|AC141111.25| Medicago truncatula clone mth2-20c17, complete sequence Length = 113836 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 518 gactacctcaagttctacaagatgggcacctactggccctacacgccgtccatccagct 576 |||||||| ||||||||||||||||| || || ||||| ||||| || ||||| ||||| Sbjct: 63345 gactacctgaagttctacaagatgggaacttattggccatacactccttccattcagct 63287
>emb|AJ421476.1|MDI421476 Methylobacterium dichloromethanicum gene for sgaA gene, hprA gene, mtdA gene and ORF DNA (partial) , strain DM4 (DSM6343) Length = 4578 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 65 aaccacctgttcgtccctgggccggtgaacatcccggaccaggtgatccgcgccatga 122 |||||||||||||| || || ||| ||||||||||||| |||||| |||||||||| Sbjct: 1065 aaccacctgttcgttcccggcccgaccaacatcccggaccgggtgatgcgcgccatga 1122
>gb|L27235.1|MTBSERCYC Methylobacterium extorquens serine cycle proteins (sgaA, hprA, and mtdA) genes Length = 3358 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 65 aaccacctgttcgtccctgggccggtgaacatcccggaccaggtgatccgcgccatga 122 |||||||||||||| || || ||| ||||||||||||| |||||| |||||||||| Sbjct: 10 aaccacctgttcgttcccggcccgaccaacatcccggaccgggtgatgcgcgccatga 67
>gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, complete sequence Length = 491611 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 223 cttcctcttccccaccaccggcaccggcgcctgggagagcgcgctcaccaacacgct 279 |||| |||||||| ||||||| ||||| | |||||| | |||||| ||||||||||| Sbjct: 154776 cttcatcttcccctccaccgggaccgggggctgggaaaccgcgctgaccaacacgct 154832
>gb|AC123528.2| Oryza sativa chromosome 11 clone OSJNBa0078E03, complete sequence Length = 149493 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 222 ccttcctcttccccaccaccggc 244 ||||||||||||||||||||||| Sbjct: 61347 ccttcctcttccccaccaccggc 61369
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 222 ccttcctcttccccaccaccggc 244 ||||||||||||||||||||||| Sbjct: 1659317 ccttcctcttccccaccaccggc 1659339
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 222 ccttcctcttccccaccaccggc 244 ||||||||||||||||||||||| Sbjct: 1706340 ccttcctcttccccaccaccggc 1706362
>dbj|AK103181.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121I24, full insert sequence Length = 2233 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 222 ccttcctcttccccaccaccggc 244 ||||||||||||||||||||||| Sbjct: 1128 ccttcctcttccccaccaccggc 1106
>dbj|AK059577.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A11, full insert sequence Length = 1255 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 222 ccttcctcttccccaccaccggc 244 ||||||||||||||||||||||| Sbjct: 165 ccttcctcttccccaccaccggc 143
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 222 ccttcctcttccccaccaccggc 244 ||||||||||||||||||||||| Sbjct: 1704061 ccttcctcttccccaccaccggc 1704083
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 222 ccttcctcttccccaccaccggc 244 ||||||||||||||||||||||| Sbjct: 1659297 ccttcctcttccccaccaccggc 1659319
>emb|BX000508.1|CNS08CDY Oryza sativa chromosome 12, . BAC OJ1575_G05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 91883 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 222 ccttcctcttccccaccaccggc 244 ||||||||||||||||||||||| Sbjct: 33607 ccttcctcttccccaccaccggc 33585
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 450 gcgccagccccaaggcgctggaggcg 475 ||||||| |||||||||||||||||| Sbjct: 174480 gcgccaggcccaaggcgctggaggcg 174505
>gb|DQ167250.1| Glycine max enzymatic resistance protein mRNA, complete cds Length = 1517 Score = 44.1 bits (22), Expect = 0.50 Identities = 52/62 (83%) Strand = Plus / Plus Query: 83 gggccggtgaacatcccggaccaggtgatccgcgccatgagcaggcagaacgaggactac 142 |||||||| ||||| ||||||||| | ||||| ||||||| ||| | || ||||||||| Sbjct: 191 gggccggttaacattccggaccagatcatccgggccatgaacagaaacaatgaggactac 250 Query: 143 cg 144 || Sbjct: 251 cg 252
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 229 cttccccaccaccggcaccggcgcct 254 |||| ||||||||||||||||||||| Sbjct: 1818704 cttcaccaccaccggcaccggcgcct 1818679 Score = 44.1 bits (22), Expect = 0.50 Identities = 43/50 (86%) Strand = Plus / Plus Query: 371 atggacgagtggggcgtggacgtggcgctgacggggtcgcagaaggcgct 420 |||||||||||||| ||||||||| ||| || || ||||||||||||| Sbjct: 9863 atggacgagtgggggttggacgtggtgctcaccggcgcgcagaaggcgct 9912 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 374 gacgagtggggcgtggacgtggcg 397 ||||||||||||||||||| |||| Sbjct: 3385942 gacgagtggggcgtggacgcggcg 3385919 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 ccaccaccggcaccggcgcc 253 |||||||||||||||||||| Sbjct: 2597680 ccaccaccggcaccggcgcc 2597699
>gb|AC118232.10| Mus musculus chromosome 9, clone RP23-462C3, complete sequence Length = 192990 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 265 gctcaccaacacgctctcccc 285 ||||||||||||||||||||| Sbjct: 96948 gctcaccaacacgctctcccc 96968
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 374 gacgagtggggcgtggacgtg 394 ||||||||||||||||||||| Sbjct: 1880208 gacgagtggggcgtggacgtg 1880228
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 365 ttccgcatggacgagtggggcgtggacgt 393 |||| ||||||||| |||||||||||||| Sbjct: 3524899 ttccacatggacgattggggcgtggacgt 3524927 Score = 42.1 bits (21), Expect = 2.0 Identities = 48/57 (84%) Strand = Plus / Plus Query: 223 cttcctcttccccaccaccggcaccggcgcctgggagagcgcgctcaccaacacgct 279 |||| |||||||| |||||||||| |||| ||||| | ||||| ||||||||||| Sbjct: 2617561 cttcatcttcccctccaccggcactggcggttgggaaacggcgctgaccaacacgct 2617617
>dbj|AB117720.1| Rhodococcus rhodochrous orf21, bphC2, orf22, orf23 genes for hypothetical proteins and 2, 3-dihydroxybiphenyl 1, 2-dioxygenase, partial and complete cds Length = 3272 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 355 cgcactggacttccgcatggacgag 379 ||||||| ||||||||||||||||| Sbjct: 281 cgcactgcacttccgcatggacgag 305
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 234 ccaccaccggcaccggcgcct 254 ||||||||||||||||||||| Sbjct: 3609723 ccaccaccggcaccggcgcct 3609703
>gb|AC131747.5| Mus musculus BAC clone RP23-36O24 from chromosome 14, complete sequence Length = 212930 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 cccccttcctcttccccacc 238 |||||||||||||||||||| Sbjct: 68798 cccccttcctcttccccacc 68817
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 14 ctggtcaccgacgggaaaagcaagatgg 41 |||||||||||||| ||||||| ||||| Sbjct: 1866670 ctggtcaccgacggcaaaagcatgatgg 1866697
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 aagaagatcttcaagaccac 210 |||||||||||||||||||| Sbjct: 3414244 aagaagatcttcaagaccac 3414263
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 gcgctgacggggtcgcagaaggcg 418 ||||||||||| |||||||||||| Sbjct: 3525940 gcgctgacgggctcgcagaaggcg 3525917
>gb|AF488414.1| Pennisetum glaucum BAC 311G2 complete sequence Length = 123096 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 acgtgaagaagatcttcaag 205 |||||||||||||||||||| Sbjct: 95140 acgtgaagaagatcttcaag 95159
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 ccctacacgccgtccatcca 573 |||||||||||||||||||| Sbjct: 1175113 ccctacacgccgtccatcca 1175094
>ref|XM_866456.1| PREDICTED: Bos taurus similar to Carbonic anhydrase IX precursor (Carbonate dehydratase IX) (CA-IX) (CAIX) (Membrane antigen MN) (P54/58N) (Renal cell carcinoma-associated antigen G250) (RCC-associated antigen G250) (pMW1), transcript variant 3 (LOC511923), mRNA Length = 1577 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 aggcggccaagacggccaag 490 |||||||||||||||||||| Sbjct: 882 aggcggccaagacggccaag 863
>ref|XM_878480.1| PREDICTED: Bos taurus similar to Carbonic anhydrase IX precursor (Carbonate dehydratase IX) (CA-IX) (CAIX) (Membrane antigen MN) (P54/58N) (Renal cell carcinoma-associated antigen G250) (RCC-associated antigen G250) (pMW1), transcript variant 8 (LOC511923), mRNA Length = 1057 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 aggcggccaagacggccaag 490 |||||||||||||||||||| Sbjct: 882 aggcggccaagacggccaag 863
>ref|XM_878368.1| PREDICTED: Bos taurus similar to Carbonic anhydrase IX precursor (Carbonate dehydratase IX) (CA-IX) (CAIX) (Membrane antigen MN) (P54/58N) (Renal cell carcinoma-associated antigen G250) (RCC-associated antigen G250) (pMW1), transcript variant 6 (LOC511923), mRNA Length = 1307 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 aggcggccaagacggccaag 490 |||||||||||||||||||| Sbjct: 882 aggcggccaagacggccaag 863
>ref|XM_878331.1| PREDICTED: Bos taurus similar to Carbonic anhydrase IX precursor (Carbonate dehydratase IX) (CA-IX) (CAIX) (Membrane antigen MN) (P54/58N) (Renal cell carcinoma-associated antigen G250) (RCC-associated antigen G250) (pMW1), transcript variant 5 (LOC511923), mRNA Length = 1682 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 aggcggccaagacggccaag 490 |||||||||||||||||||| Sbjct: 882 aggcggccaagacggccaag 863
>ref|XM_954941.1| Neurospora crassa OR74A hypothetical protein (NCU05774.1) partial mRNA Length = 2979 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 ccttcctcttccccaccacc 241 |||||||||||||||||||| Sbjct: 629 ccttcctcttccccaccacc 610
>ref|XM_325628.1| Neurospora crassa OR74A hypothetical protein (NCU05774.1) partial mRNA Length = 2979 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 ccttcctcttccccaccacc 241 |||||||||||||||||||| Sbjct: 629 ccttcctcttccccaccacc 610
>gb|AC107770.10| Mus musculus chromosome 5, clone RP23-114M24, complete sequence Length = 191762 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 agcaagatggactacatgaa 51 |||||||||||||||||||| Sbjct: 113256 agcaagatggactacatgaa 113237
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16 Length = 343473 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 ccggcaccggcgcctgggag 259 |||||||||||||||||||| Sbjct: 96527 ccggcaccggcgcctgggag 96508
>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14 Length = 255260 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 ccggcaccggcgcctgggag 259 |||||||||||||||||||| Sbjct: 14969 ccggcaccggcgcctgggag 14950
>gb|AC025187.6| Homo sapiens chromosome 5 clone CTD-2383I20, complete sequence Length = 137219 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 acccccttcctcttccccac 237 |||||||||||||||||||| Sbjct: 43210 acccccttcctcttccccac 43191
>gb|AF406936.1|AF406936 Chlamydomonas reinhardtii co-chaperone CGE1 precursor isoform b (CGE1) mRNA, complete cds, alternatively spliced; nuclear gene for chloroplast product Length = 1262 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 ccaccaccggcacccccttc 226 |||||||||||||||||||| Sbjct: 624 ccaccaccggcacccccttc 643
>gb|AF406935.1|AF406935 Chlamydomonas reinhardtii co-chaperone CGE1 precursor isoform a (CGE1) mRNA, complete cds, alternatively spliced; nuclear gene for chloroplast product Length = 1256 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 ccaccaccggcacccccttc 226 |||||||||||||||||||| Sbjct: 618 ccaccaccggcacccccttc 637
>gb|AC011603.37| Homo sapiens 12 BAC RP11-386G11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174400 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 tcctcttccccaccaccggc 244 |||||||||||||||||||| Sbjct: 137329 tcctcttccccaccaccggc 137348
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 7.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 223 cttcctcttccccaccaccggcaccggcgcctggga 258 |||| ||| |||| || ||||||||||||||||||| Sbjct: 1108712 cttcatctacccctcctccggcaccggcgcctggga 1108747
>gb|AY108506.1| Zea mays PCO140287 mRNA sequence Length = 637 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 gatcttcaagaccaccaccg 215 |||||||||||||||||||| Sbjct: 66 gatcttcaagaccaccaccg 47
>gb|U00090.1| Rhizobium sp. NGR234 plasmid pNGR234a, complete sequence Length = 536165 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 gaggcggccaagacggccaa 489 |||||||||||||||||||| Sbjct: 144548 gaggcggccaagacggccaa 144529
>gb|BC039197.2| Homo sapiens myeloid/lymphoid or mixed-lineage leukemia 2, mRNA (cDNA clone IMAGE:4180948), partial cds Length = 4008 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 tcctcttccccaccaccggc 244 |||||||||||||||||||| Sbjct: 1381 tcctcttccccaccaccggc 1400
>gb|L38606.1|PMNRGOF Phytomonas sp. (isolate French-Guiana; host Euphorbia hyssopifolia) 16S-like ribosomal RNA (rRNA) gene Length = 328 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 caccaccggcaccggcgcct 254 |||||||||||||||||||| Sbjct: 251 caccaccggcaccggcgcct 270
>gb|L38601.1|PMNRGOB Phytomonas sp. (isolate Ecuador; host Euphorbia hyssopifolia) small subunit ribosomal RNA (rRNA) gene Length = 345 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 caccaccggcaccggcgcct 254 |||||||||||||||||||| Sbjct: 268 caccaccggcaccggcgcct 287 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,959,542 Number of Sequences: 3902068 Number of extensions: 3959542 Number of successful extensions: 89328 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88086 Number of HSP's gapped (non-prelim): 1237 length of query: 579 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 556 effective length of database: 17,143,297,704 effective search space: 9531673523424 effective search space used: 9531673523424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)