ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63d17 |
|---|---|
| Clone Library Name | barley_pub |
>AROC_BORPE (Q7VY92) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 353 Score = 34.3 bits (77), Expect = 0.078 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -3 Query: 132 FGSGAPAGGARTSSWMTRPTAAVGTCSRRWCPASF 28 +G P GG R+S+ +T PT A G +++W + F Sbjct: 115 YGVRDPRGGGRSSARLTAPTVAAGAIAKKWLASQF 149
>RFIP3_HUMAN (O75154) Rab11 family-interacting protein 3 (Rab11-FIP3) (EF| hands-containing Rab-interacting protein) (Eferin) Length = 756 Score = 34.3 bits (77), Expect = 0.078 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = +2 Query: 101 LAPPAGAPDPKSRSTDKPPAGGEVDGGA 184 L P G PDP+S D+P G DGGA Sbjct: 41 LGAPVGGPDPQSPGLDEPAPGAAADGGA 68
>AROC_BORPA (Q7W950) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 353 Score = 33.9 bits (76), Expect = 0.10 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -3 Query: 132 FGSGAPAGGARTSSWMTRPTAAVGTCSRRWCPASF 28 +G P GG R+S+ +T PT A G +++W F Sbjct: 115 YGVRDPRGGGRSSARLTAPTVAAGAIAKKWLAGQF 149
>AROC_BORBR (Q7WKJ5) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 353 Score = 33.9 bits (76), Expect = 0.10 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -3 Query: 132 FGSGAPAGGARTSSWMTRPTAAVGTCSRRWCPASF 28 +G P GG R+S+ +T PT A G +++W F Sbjct: 115 YGVRDPRGGGRSSARLTAPTVAAGAIAKKWLAGQF 149
>Y2594_STRCO (Q9L1I2) Exopolysaccharide phosphotransferase SCO2594 (EC 2.7.-.-)| (Stealth protein SCO2594) Length = 602 Score = 33.1 bits (74), Expect = 0.17 Identities = 20/47 (42%), Positives = 24/47 (51%) Frame = -3 Query: 141 DLDFGSGAPAGGARTSSWMTRPTAAVGTCSRRWCPASFLFLEVLGPE 1 DLD G GA AGG R TRP A G+ RR P ++ V G + Sbjct: 256 DLDAGDGA-AGGPRPGLVRTRPAFAAGSVGRRTFPIDVVYTWVDGSD 301
>ZFHX2_HUMAN (Q9C0A1) Zinc finger homeobox protein 2| Length = 1427 Score = 31.6 bits (70), Expect = 0.51 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Frame = +2 Query: 59 VPTAAVGLVIHEEVLAPPAGAPDPKSRSTDKP---PAGGEVDGGAVDRI 196 +P +GL + +L PP P+P + + KP PA GE + G VD + Sbjct: 1243 IPQTLIGL-LPNALLQPPPQPPEPTATAPPKPPELPAPGEGEAGEVDEL 1290
>AROC_RALSO (Q8XZ40) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 366 Score = 31.2 bits (69), Expect = 0.66 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -3 Query: 132 FGSGAPAGGARTSSWMTRPTAAVGTCSRRWCPASF 28 +G P GG R+S+ +T P A G +++W F Sbjct: 115 YGIRDPRGGGRSSARLTAPVVAAGAVAKKWLREKF 149
>CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displacement protein)| (CDP) Length = 1505 Score = 30.0 bits (66), Expect = 1.5 Identities = 19/58 (32%), Positives = 27/58 (46%) Frame = +2 Query: 5 GPNTSKKRKLAGHQRREQVPTAAVGLVIHEEVLAPPAGAPDPKSRSTDKPPAGGEVDG 178 G +++ K G RE+VP A E+ PP+G P P + D GG V+G Sbjct: 1348 GSADTEEPKSQGEAEREEVPRPA------EQTEPPPSGTPGPDD-ARDDDHEGGPVEG 1398
>MUTS_BURPS (Q63SR9) DNA mismatch repair protein mutS| Length = 890 Score = 30.0 bits (66), Expect = 1.5 Identities = 20/62 (32%), Positives = 28/62 (45%) Frame = +2 Query: 44 QRREQVPTAAVGLVIHEEVLAPPAGAPDPKSRSTDKPPAGGEVDGGAVDRISNLHDDNLR 223 +R ++ + A L E L PP G D +R+ PA DGG + R + D LR Sbjct: 399 ERVAEIASNAAALGRLEAALEPPPGCLDLLTRAIAAEPAAMVRDGGVIARGYDAELDELR 458 Query: 224 HI 229 I Sbjct: 459 DI 460
>MUTS_BURP1 (Q3JQS6) DNA mismatch repair protein mutS| Length = 890 Score = 30.0 bits (66), Expect = 1.5 Identities = 20/62 (32%), Positives = 28/62 (45%) Frame = +2 Query: 44 QRREQVPTAAVGLVIHEEVLAPPAGAPDPKSRSTDKPPAGGEVDGGAVDRISNLHDDNLR 223 +R ++ + A L E L PP G D +R+ PA DGG + R + D LR Sbjct: 399 ERVAEIASNAAALGRLEAALEPPPGCLDLLTRAIAAEPAAMVRDGGVIARGYDAELDELR 458 Query: 224 HI 229 I Sbjct: 459 DI 460
>MUTS_BURMA (Q62J26) DNA mismatch repair protein mutS| Length = 891 Score = 30.0 bits (66), Expect = 1.5 Identities = 20/62 (32%), Positives = 28/62 (45%) Frame = +2 Query: 44 QRREQVPTAAVGLVIHEEVLAPPAGAPDPKSRSTDKPPAGGEVDGGAVDRISNLHDDNLR 223 +R ++ + A L E L PP G D +R+ PA DGG + R + D LR Sbjct: 399 ERVAEIASNAAALGRLEAALEPPPGCLDLLTRAIAAEPAAMVRDGGVIARGYDAELDELR 458 Query: 224 HI 229 I Sbjct: 459 DI 460
>FXL12_HUMAN (Q9NXK8) F-box/LRR-repeat protein 12 (F-box and leucine-rich repeat| protein 12) (F-box protein FBL12) Length = 326 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 6/45 (13%) Frame = +2 Query: 203 LHDDNLRHIVSLLPVKDGARTQXLASRW------RHVWRSVPLNL 319 L D L I S LPV+D R + RW R +WR V L L Sbjct: 7 LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTL 51
>DCP1B_HUMAN (Q8IZD4) mRNA decapping enzyme 1B (EC 3.-.-.-)| Length = 618 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = +2 Query: 8 PNTSKKRKLAGHQRREQVP-TAAVGLVIHEEVLAPPAGAPDPKSRSTDKPPAGGE 169 PNT ++ L +++P TAA L++ V A P P PK R + P GG+ Sbjct: 499 PNTEQQTPLFQVISPQRIPATAAPSLLMSPMVFAQPTSVP-PKERESGLLPVGGQ 552
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = +2 Query: 62 PTAAVGLVIHEEVLAPPAGAPDPKSRSTDKPPAGGEVDGG 181 P A G H P +P P SR+T+ PP+ G G Sbjct: 2767 PAATTGTTQHS---TPALSSPHPSSRTTESPPSPGTTTPG 2803 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = +2 Query: 62 PTAAVGLVIHEEVLAPPAGAPDPKSRSTDKPPAGGEVDGG 181 P A G H P +P P SR+T+ PP+ G G Sbjct: 2238 PAATTGTTQHS---TPALSSPHPSSRTTESPPSPGTTTPG 2274
>APLP_MANSE (Q25490) Apolipophorins precursor [Contains: Apolipophorin-2| (Apolipophorin II) (apoLp-2); Apolipophorin-1 (Apolipophorin I) (apoLp-1)] Length = 3305 Score = 28.9 bits (63), Expect = 3.3 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 6/92 (6%) Frame = +2 Query: 11 NTSKKRKLAGHQRREQVPTAAVGLVIHEEVLAPPAGAPDPKSRSTDKPPAGGEVDGGAVD 190 N K+ G + + L +H VL+ P G P + +KP DG Sbjct: 62 NQETSLKMLGQASVSAISNCELELSVHNMVLSGPDGKKYPCPQGIEKPVRFSYQDGRVGP 121 Query: 191 RISNLHDDNLRH------IVSLLPVKDGARTQ 268 I DD+ R I+SLL + Q Sbjct: 122 EICAAEDDSRRSLNIKRAIISLLQAEQKPSVQ 153
>CITXG_LEUMC (O53080) Protein citXG [Includes: Apo-citrate lyase| phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61) (Holo-ACP synthase) (Holo-citrate lyase synthase) (Apo-ACP nucleodityltransferase); 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A sy Length = 467 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +2 Query: 11 NTSKKRKLAGHQRREQVPTAAVGLVIHEEVLAPPAGAPDPKSRSTDK 151 N K + + + QV AA+ +++E LAP G DP S K Sbjct: 174 NFEKSKMIVPQMTQSQVVNAALTGMLYEVSLAPKPGLVDPSSNGAHK 220
>PHC2_MOUSE (Q9QWH1) Polyhomeotic-like protein 2 (mPH2) (Early development| regulatory protein 2) (p36) Length = 850 Score = 28.5 bits (62), Expect = 4.3 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = +2 Query: 53 EQVPTAAVGLVIHEEVLAP--PAGAPDPKSRSTDKPPAGGEVDGGAVDRISNL 205 + VP A G H++ + P P G P PKS + + PA E G V +++L Sbjct: 472 KSVPVARPGPSPHQQAIIPAIPGGLPGPKSPNIQQCPA-HETGQGIVHALTDL 523
>FXL12_MOUSE (Q9EPX5) F-box/LRR-repeat protein 12 (F-box and leucine-rich repeat| protein 12) (F-box protein FBL12) Length = 326 Score = 28.5 bits (62), Expect = 4.3 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Frame = +2 Query: 200 NLHDDNLRHIVSLLPVKDGARTQXLASRW------RHVWRSVPLNL 319 +L D L I S LPV+D R + RW R +WR V L L Sbjct: 6 DLPDLVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTL 51
>CDSN_MOUSE (Q7TPC1) Corneodesmosin precursor| Length = 561 Score = 28.5 bits (62), Expect = 4.3 Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 11/74 (14%) Frame = +2 Query: 2 SGPNTSKKRKLAGHQRREQVPTAAVGLVIHEEVLAP-----------PAGAPDPKSRSTD 148 SGP S ++G QR V +V H P PAG P P S Sbjct: 264 SGPYISGTHTVSGGQR------PVVVVVEHHGSAGPGFQGMPCSNGGPAGKPCPPITSVQ 317 Query: 149 KPPAGGEVDGGAVD 190 KP G EV GG+ + Sbjct: 318 KPYGGYEVVGGSAN 331
>MUTS1_HALSA (Q9HSM2) DNA mismatch repair protein mutS 1| Length = 871 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -3 Query: 156 GGLSVDLDFGSGAPAGGARTSSWMTRPTAAVGTCSRR 46 G L +D + A AGG R ++W+TRPT RR Sbjct: 279 GSLLATIDHTASA-AGGRRLAAWVTRPTRDRAELDRR 314
>ASF1_HELAN (P22357) Anther-specific protein SF18 precursor (Fragment)| Length = 161 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 5/32 (15%) Frame = +2 Query: 104 APPAGAPDPKSRSTD-----KPPAGGEVDGGA 184 APPAG P D PPAGG+ GGA Sbjct: 114 APPAGGGSPPPAGGDGGGGAPPPAGGDGGGGA 145
>LOXL1_HUMAN (Q08397) Lysyl oxidase homolog 1 precursor (EC 1.4.3.-) (Lysyl| oxidase-like protein 1) (LOL) Length = 574 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = +2 Query: 95 EVLAPPAGAPDP--KSRSTDKPPAGGEVDGGAVDRIS 199 E PP P RS+D PP GGE +G R+S Sbjct: 319 EAYGPPRALEPPYLPVRSSDTPPPGGERNGAQQGRLS 355
>CMC1_MOUSE (Q8BH59) Calcium-binding mitochondrial carrier protein Aralar1| (Mitochondrial aspartate glutamate carrier 1) (Solute carrier family 25 member 12) Length = 677 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +2 Query: 101 LAPPAGAPDPKSRSTDKPPAGGEVDGG 181 L P P PKSR D PPA + GG Sbjct: 612 LKPSGSEPTPKSRIADLPPANPDHIGG 638
>CMC1_PONPY (Q5RBC8) Calcium-binding mitochondrial carrier protein Aralar1| (Mitochondrial aspartate glutamate carrier 1) (Solute carrier family 25 member 12) Length = 678 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +2 Query: 101 LAPPAGAPDPKSRSTDKPPAGGEVDGG 181 L P P PKSR D PPA + GG Sbjct: 612 LKPAGSEPTPKSRIADLPPANPDHIGG 638
>CMC1_HUMAN (O75746) Calcium-binding mitochondrial carrier protein Aralar1| (Mitochondrial aspartate glutamate carrier 1) (Solute carrier family 25 member 12) Length = 678 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +2 Query: 101 LAPPAGAPDPKSRSTDKPPAGGEVDGG 181 L P P PKSR D PPA + GG Sbjct: 612 LKPAGSEPTPKSRIADLPPANPDHIGG 638
>ZEP2_RAT (Q00900) Human immunodeficiency virus type I enhancer-binding protein| 2 homolog (DNA-binding protein AGIE-BP1) (Angiotensinogen gene-inducible enhancer-binding protein 1) (Myc intron-binding protein 1) Length = 2437 Score = 28.1 bits (61), Expect = 5.6 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = +2 Query: 11 NTSKKRKLAGHQRREQVPTAAVGLVIHEEVLAPPAGAPDPKSRSTDKPP 157 +T KK H + + P + +H + L PP DP S+ST+ PP Sbjct: 1257 HTGKKSADYPHAKEQTYPCYSGASGLHSKNL-PPKFPSDPGSKSTEAPP 1304
>SAHH3_HUMAN (Q96HN2) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3) Length = 611 Score = 28.1 bits (61), Expect = 5.6 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = +2 Query: 65 TAAVGLVIHEEVLAPPAGAPDPK--SRSTDKPPAGGEVDGGA 184 TAAVG +APPAG DP+ + + ++PP G G A Sbjct: 35 TAAVG------AMAPPAGGGDPEAPAPAAERPPVPGPGSGPA 70
>CUT_DROME (P10180) Homeobox protein cut| Length = 2175 Score = 28.1 bits (61), Expect = 5.6 Identities = 21/69 (30%), Positives = 29/69 (42%) Frame = +2 Query: 41 HQRREQVPTAAVGLVIHEEVLAPPAGAPDPKSRSTDKPPAGGEVDGGAVDRISNLHDDNL 220 HQ+ Q AA L H+ +L G P P+ + P AGG GG + + N Sbjct: 1524 HQQHHQAAAAAAALH-HQSMLLTSPGLP-PQHAISLPPSAGGAQPGGPGGNQGSSNPSNS 1581 Query: 221 RHIVSLLPV 247 L+PV Sbjct: 1582 EKKPMLMPV 1590
>CDSN_PANTR (Q7YR44) Corneodesmosin precursor (S protein)| Length = 529 Score = 28.1 bits (61), Expect = 5.6 Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 6/69 (8%) Frame = +2 Query: 2 SGPNTSKKRKLAGHQRREQVPTAAVGLVIHEEVLAPPA------GAPDPKSRSTDKPPAG 163 SGP ++G QR V G V PP G P P S DK G Sbjct: 236 SGPYIPSSHSVSGGQRPVVVVVDQHGSGAPGVVQGPPCSNGGLPGKPCPPITSVDKSYGG 295 Query: 164 GEVDGGAVD 190 EV GG+ D Sbjct: 296 YEVVGGSSD 304
>CDSN_HUMAN (Q15517) Corneodesmosin precursor (S protein)| Length = 529 Score = 28.1 bits (61), Expect = 5.6 Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 6/69 (8%) Frame = +2 Query: 2 SGPNTSKKRKLAGHQRREQVPTAAVGLVIHEEVLAPPA------GAPDPKSRSTDKPPAG 163 SGP ++G QR V G V PP G P P S DK G Sbjct: 236 SGPYIPSSHSVSGGQRPVVVVVDQHGSGAPGVVQGPPCSNGGLPGKPCPPITSVDKSYGG 295 Query: 164 GEVDGGAVD 190 EV GG+ D Sbjct: 296 YEVVGGSSD 304
>SGCA_HUMAN (Q16586) Alpha-sarcoglycan precursor (Alpha-SG) (Adhalin) (50 kDa| dystrophin-associated glycoprotein) (50DAG) (Dystroglycan 2) Length = 387 Score = 27.3 bits (59), Expect = 9.5 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = +2 Query: 53 EQVPTAAVGLVIHEEVLAPPAGAPD 127 ++VPT G++ H+ PP APD Sbjct: 259 DEVPTPGDGILEHDPFFCPPTEAPD 283
>NEG1_NEUCR (Q7M4T0) Endo-1,6-beta-D-glucanase precursor (EC 3.2.1.75)| (Beta-1,6-glucanase Neg1) (Glucan endo-1,6-beta-glucosidase) Length = 480 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/34 (35%), Positives = 15/34 (44%) Frame = -1 Query: 116 PPAVXXXXXXXXXXXXPSAPVHGAGVPLASSSWK 15 P A SAPV G G P ++S+WK Sbjct: 21 PQAYASSADGRYKLSSYSAPVRGTGTPGSNSTWK 54
>ZCHC3_HUMAN (Q9NUD5) Zinc finger CCHC domain-containing protein 3| Length = 404 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/23 (60%), Positives = 14/23 (60%) Frame = +2 Query: 107 PPAGAPDPKSRSTDKPPAGGEVD 175 PPAG DPK R D PAG VD Sbjct: 90 PPAGRGDPKGRRRD--PAGEAVD 110 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,130,852 Number of Sequences: 219361 Number of extensions: 675313 Number of successful extensions: 2879 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 2700 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2876 length of database: 80,573,946 effective HSP length: 91 effective length of database: 60,612,095 effective search space used: 1454690280 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
