ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63d17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474852.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1572 Score = 83.8 bits (42), Expect = 3e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 184 cgtcgaccgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctccc 243 |||||||||||||||| ||||| ||||| | ||||||| |||||||||||| |||||| Sbjct: 198 cgtcgaccgcatcagcgccctccccgacgcgatcctccgcaacatcgtctcccgcctccc 257 Query: 244 cgtcaaggacggcgcccgcacc 265 ||||||||||| ||| |||||| Sbjct: 258 cgtcaaggacgccgcgcgcacc 279
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 83.8 bits (42), Expect = 3e-13 Identities = 72/82 (87%) Strand = Plus / Minus Query: 184 cgtcgaccgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctccc 243 |||||||||||||||| ||||| ||||| | ||||||| |||||||||||| |||||| Sbjct: 7218532 cgtcgaccgcatcagcgccctccccgacgcgatcctccgcaacatcgtctcccgcctccc 7218473 Query: 244 cgtcaaggacggcgcccgcacc 265 ||||||||||| ||| |||||| Sbjct: 7218472 cgtcaaggacgccgcgcgcacc 7218451 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 217 cctccgccacatcgtctccctcctccccgtcaaggacggcgcccgcacc 265 |||||||| |||||||||| ||||||||||||||||| ||| |||||| Sbjct: 7228923 cctccgccggatcgtctcccgcctccccgtcaaggacgccgcgcgcacc 7228875 Score = 56.0 bits (28), Expect = 8e-05 Identities = 70/84 (83%) Strand = Plus / Minus Query: 182 gccgtcgaccgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctc 241 |||||||||||||||||| ||||| ||||| ||||||| ||||||||| |||| Sbjct: 7224357 gccgtcgaccgcatcagcgccctccccgacgcgctcctccgcagggtcgtctcccgcctc 7224298 Query: 242 cccgtcaaggacggcgcccgcacc 265 ||||||||||||| ||| |||||| Sbjct: 7224297 cccgtcaaggacgccgcgcgcacc 7224274 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 281 cggtggcgccacgtctggcgctccgt 306 |||||||||||| ||||||||||||| Sbjct: 21916963 cggtggcgccacctctggcgctccgt 21916938 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 accgcccgccggaggggagg 170 |||||||||||||||||||| Sbjct: 25113954 accgcccgccggaggggagg 25113935 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 cggtggcgccacgtctggcgctcc 304 |||||||||||| ||||||||||| Sbjct: 21973935 cggtggcgccacctctggcgctcc 21973912 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 238 cctccccgtcaaggacggcgcccgcacc 265 ||||||| |||||||| ||||||||||| Sbjct: 12760909 cctccccttcaaggacagcgcccgcacc 12760882
>dbj|AK069629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024E15, full insert sequence Length = 1869 Score = 83.8 bits (42), Expect = 3e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 184 cgtcgaccgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctccc 243 |||||||||||||||| ||||| ||||| | ||||||| |||||||||||| |||||| Sbjct: 263 cgtcgaccgcatcagcgccctccccgacgcgatcctccgcaacatcgtctcccgcctccc 322 Query: 244 cgtcaaggacggcgcccgcacc 265 ||||||||||| ||| |||||| Sbjct: 323 cgtcaaggacgccgcgcgcacc 344
>emb|AL606994.3|OSJN00114 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035O13, complete sequence Length = 143298 Score = 83.8 bits (42), Expect = 3e-13 Identities = 72/82 (87%) Strand = Plus / Minus Query: 184 cgtcgaccgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctccc 243 |||||||||||||||| ||||| ||||| | ||||||| |||||||||||| |||||| Sbjct: 82269 cgtcgaccgcatcagcgccctccccgacgcgatcctccgcaacatcgtctcccgcctccc 82210 Query: 244 cgtcaaggacggcgcccgcacc 265 ||||||||||| ||| |||||| Sbjct: 82209 cgtcaaggacgccgcgcgcacc 82188 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 217 cctccgccacatcgtctccctcctccccgtcaaggacggcgcccgcacc 265 |||||||| |||||||||| ||||||||||||||||| ||| |||||| Sbjct: 92660 cctccgccggatcgtctcccgcctccccgtcaaggacgccgcgcgcacc 92612 Score = 56.0 bits (28), Expect = 8e-05 Identities = 70/84 (83%) Strand = Plus / Minus Query: 182 gccgtcgaccgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctc 241 |||||||||||||||||| ||||| ||||| ||||||| ||||||||| |||| Sbjct: 88094 gccgtcgaccgcatcagcgccctccccgacgcgctcctccgcagggtcgtctcccgcctc 88035 Query: 242 cccgtcaaggacggcgcccgcacc 265 ||||||||||||| ||| |||||| Sbjct: 88034 cccgtcaaggacgccgcgcgcacc 88011
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 69.9 bits (35), Expect = 5e-09 Identities = 97/118 (82%) Strand = Plus / Plus Query: 187 cgaccgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctccccgt 246 ||||||||||||| ||||| |||||| | ||||||| | ||||||||| |||||||| Sbjct: 4320770 cgaccgcatcagcctcctccccgacgacatcctccgcgccgtcgtctcccgcctccccgc 4320829 Query: 247 caaggacggcgcccgcacccagatnctcgcgtcccggtggcgccacgtctggcgctcc 304 |||||||||||| |||||| | ||| | ||||| ||||||| | ||||||||||| Sbjct: 4320830 caaggacggcgcgcgcaccgccgtgctctcctcccgctggcgccgcctctggcgctcc 4320887 Score = 60.0 bits (30), Expect = 5e-06 Identities = 69/82 (84%) Strand = Plus / Minus Query: 184 cgtcgaccgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctccc 243 |||||||||||||||| ||||| |||||| ||||||| || |||| |||| |||||| Sbjct: 17375444 cgtcgaccgcatcagccgcctccccgacgagctcctccgcgacgtcgtgtcccgcctccc 17375385 Query: 244 cgtcaaggacggcgcccgcacc 265 || || ||||||||| |||||| Sbjct: 17375384 cgccagggacggcgcgcgcacc 17375363 Score = 54.0 bits (27), Expect = 3e-04 Identities = 95/118 (80%) Strand = Plus / Minus Query: 187 cgaccgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctccccgt 246 ||||| |||||||||||||| |||| | ||| || |||||||| ||| ||||||| Sbjct: 11415677 cgaccacatcagcaacctcccggacgccatccttggcgacatcgtcgcccgcctccccac 11415618 Query: 247 caaggacggcgcccgcacccagatnctcgcgtcccggtggcgccacgtctggcgctcc 304 ||| || | || | |||| ||||| ||||| | ||||||||||||| ||||||||||| Sbjct: 11415617 caaagaagccggcagcacgcagatcctcgcctgccggtggcgccacatctggcgctcc 11415560
>dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544B02 Length = 156339 Score = 69.9 bits (35), Expect = 5e-09 Identities = 97/118 (82%) Strand = Plus / Plus Query: 187 cgaccgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctccccgt 246 ||||||||||||| ||||| |||||| | ||||||| | ||||||||| |||||||| Sbjct: 4334 cgaccgcatcagcctcctccccgacgacatcctccgcgccgtcgtctcccgcctccccgc 4393 Query: 247 caaggacggcgcccgcacccagatnctcgcgtcccggtggcgccacgtctggcgctcc 304 |||||||||||| |||||| | ||| | ||||| ||||||| | ||||||||||| Sbjct: 4394 caaggacggcgcgcgcaccgccgtgctctcctcccgctggcgccgcctctggcgctcc 4451
>dbj|AP004838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0504A05 Length = 148360 Score = 69.9 bits (35), Expect = 5e-09 Identities = 97/118 (82%) Strand = Plus / Plus Query: 187 cgaccgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctccccgt 246 ||||||||||||| ||||| |||||| | ||||||| | ||||||||| |||||||| Sbjct: 137584 cgaccgcatcagcctcctccccgacgacatcctccgcgccgtcgtctcccgcctccccgc 137643 Query: 247 caaggacggcgcccgcacccagatnctcgcgtcccggtggcgccacgtctggcgctcc 304 |||||||||||| |||||| | ||| | ||||| ||||||| | ||||||||||| Sbjct: 137644 caaggacggcgcgcgcaccgccgtgctctcctcccgctggcgccgcctctggcgctcc 137701
>ref|NM_192623.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1509 Score = 63.9 bits (32), Expect = 3e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 226 catcgtctccctcctccccgtcaaggacggcgcccgcacc 265 ||||||||| | |||||||||||||||||||||||||||| Sbjct: 171 catcgtctctcgcctccccgtcaaggacggcgcccgcacc 210
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 63.9 bits (32), Expect = 3e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 226 catcgtctccctcctccccgtcaaggacggcgcccgcacc 265 ||||||||| | |||||||||||||||||||||||||||| Sbjct: 23348127 catcgtctctcgcctccccgtcaaggacggcgcccgcacc 23348166 Score = 61.9 bits (31), Expect = 1e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 191 cgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctccccgtcaag 250 ||||||||| ||||| |||||| |||||||||||||||||||| ||||||| |||| Sbjct: 23356860 cgcatcagcgccctccccgacgacctcctccgccacatcgtctcccgcctccccaccaag 23356919 Query: 251 gacggcgcccgcacc 265 || | |||||||||| Sbjct: 23356920 gatgccgcccgcacc 23356934 Score = 50.1 bits (25), Expect = 0.005 Identities = 58/69 (84%) Strand = Plus / Minus Query: 184 cgtcgaccgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctccc 243 ||||||||||||||||| ||||| ||||| |||| || | ||||||||| |||||| Sbjct: 31758215 cgtcgaccgcatcagcaccctccctgacgagctcctcagcaaggtcgtctcccacctccc 31758156 Query: 244 cgtcaagga 252 ||||||||| Sbjct: 31758155 cgtcaagga 31758147 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Plus Query: 218 ctccgccacatcgtctccctcctccccgtcaaggacg 254 |||||| |||||||| ||| ||||||||||||||||| Sbjct: 23372888 ctccgcaacatcgtcgcccgcctccccgtcaaggacg 23372924
>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1103C09 Length = 163996 Score = 63.9 bits (32), Expect = 3e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 226 catcgtctccctcctccccgtcaaggacggcgcccgcacc 265 ||||||||| | |||||||||||||||||||||||||||| Sbjct: 73825 catcgtctctcgcctccccgtcaaggacggcgcccgcacc 73864 Score = 61.9 bits (31), Expect = 1e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 191 cgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctccccgtcaag 250 ||||||||| ||||| |||||| |||||||||||||||||||| ||||||| |||| Sbjct: 82558 cgcatcagcgccctccccgacgacctcctccgccacatcgtctcccgcctccccaccaag 82617 Query: 251 gacggcgcccgcacc 265 || | |||||||||| Sbjct: 82618 gatgccgcccgcacc 82632 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Plus Query: 218 ctccgccacatcgtctccctcctccccgtcaaggacg 254 |||||| |||||||| ||| ||||||||||||||||| Sbjct: 98586 ctccgcaacatcgtcgcccgcctccccgtcaaggacg 98622
>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0451D05 Length = 148381 Score = 63.9 bits (32), Expect = 3e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 226 catcgtctccctcctccccgtcaaggacggcgcccgcacc 265 ||||||||| | |||||||||||||||||||||||||||| Sbjct: 134869 catcgtctctcgcctccccgtcaaggacggcgcccgcacc 134908 Score = 61.9 bits (31), Expect = 1e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 191 cgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctccccgtcaag 250 ||||||||| ||||| |||||| |||||||||||||||||||| ||||||| |||| Sbjct: 143602 cgcatcagcgccctccccgacgacctcctccgccacatcgtctcccgcctccccaccaag 143661 Query: 251 gacggcgcccgcacc 265 || | |||||||||| Sbjct: 143662 gatgccgcccgcacc 143676
>ref|NM_192625.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1506 Score = 61.9 bits (31), Expect = 1e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 191 cgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctccccgtcaag 250 ||||||||| ||||| |||||| |||||||||||||||||||| ||||||| |||| Sbjct: 118 cgcatcagcgccctccccgacgacctcctccgccacatcgtctcccgcctccccaccaag 177 Query: 251 gacggcgcccgcacc 265 || | |||||||||| Sbjct: 178 gatgccgcccgcacc 192
>ref|XM_465782.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1974 Score = 60.0 bits (30), Expect = 5e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 184 cgtcgaccgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctccc 243 |||||||||||||||| ||||| |||||| ||||||| || |||| |||| |||||| Sbjct: 204 cgtcgaccgcatcagccgcctccccgacgagctcctccgcgacgtcgtgtcccgcctccc 263 Query: 244 cgtcaaggacggcgcccgcacc 265 || || ||||||||| |||||| Sbjct: 264 cgccagggacggcgcgcgcacc 285
>dbj|AP005317.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0579G08 Length = 164452 Score = 60.0 bits (30), Expect = 5e-06 Identities = 69/82 (84%) Strand = Plus / Minus Query: 184 cgtcgaccgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctccc 243 |||||||||||||||| ||||| |||||| ||||||| || |||| |||| |||||| Sbjct: 148127 cgtcgaccgcatcagccgcctccccgacgagctcctccgcgacgtcgtgtcccgcctccc 148068 Query: 244 cgtcaaggacggcgcccgcacc 265 || || ||||||||| |||||| Sbjct: 148067 cgccagggacggcgcgcgcacc 148046
>ref|XM_474854.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1533 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 217 cctccgccacatcgtctccctcctccccgtcaaggacggcgcccgcacc 265 |||||||| |||||||||| ||||||||||||||||| ||| |||||| Sbjct: 186 cctccgccggatcgtctcccgcctccccgtcaaggacgccgcgcgcacc 234
>dbj|AK100900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131H22, full insert sequence Length = 1828 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 217 cctccgccacatcgtctccctcctccccgtcaaggacggcgcccgcacc 265 |||||||| |||||||||| ||||||||||||||||| ||| |||||| Sbjct: 278 cctccgccggatcgtctcccgcctccccgtcaaggacgccgcgcgcacc 326
>ref|XM_474853.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1521 Score = 56.0 bits (28), Expect = 8e-05 Identities = 70/84 (83%) Strand = Plus / Plus Query: 182 gccgtcgaccgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctc 241 |||||||||||||||||| ||||| ||||| ||||||| ||||||||| |||| Sbjct: 145 gccgtcgaccgcatcagcgccctccccgacgcgctcctccgcagggtcgtctcccgcctc 204 Query: 242 cccgtcaaggacggcgcccgcacc 265 ||||||||||||| ||| |||||| Sbjct: 205 cccgtcaaggacgccgcgcgcacc 228
>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088M05, complete sequence Length = 153368 Score = 56.0 bits (28), Expect = 8e-05 Identities = 28/28 (100%) Strand = Plus / Minus Query: 238 cctccccgtcaaggacggcgcccgcacc 265 |||||||||||||||||||||||||||| Sbjct: 103085 cctccccgtcaaggacggcgcccgcacc 103058
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 56.0 bits (28), Expect = 8e-05 Identities = 28/28 (100%) Strand = Plus / Minus Query: 238 cctccccgtcaaggacggcgcccgcacc 265 |||||||||||||||||||||||||||| Sbjct: 18309873 cctccccgtcaaggacggcgcccgcacc 18309846
>dbj|AK106410.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-H10, full insert sequence Length = 1947 Score = 56.0 bits (28), Expect = 8e-05 Identities = 70/84 (83%) Strand = Plus / Plus Query: 182 gccgtcgaccgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctc 241 |||||||||||||||||| ||||| ||||| ||||||| ||||||||| |||| Sbjct: 271 gccgtcgaccgcatcagcgccctccccgacgcgctcctccgcagggtcgtctcccgcctc 330 Query: 242 cccgtcaaggacggcgcccgcacc 265 ||||||||||||| ||| |||||| Sbjct: 331 cccgtcaaggacgccgcgcgcacc 354
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 227 atcgtctccctcctccccgtcaaggacggcgcccgcacc 265 |||||||||| |||||||||||||||||||| |||||| Sbjct: 15073017 atcgtctcccgtctccccgtcaaggacggcgctcgcacc 15073055
>dbj|AP004123.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1654_A02 Length = 128520 Score = 54.0 bits (27), Expect = 3e-04 Identities = 95/118 (80%) Strand = Plus / Minus Query: 187 cgaccgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctccccgt 246 ||||| |||||||||||||| |||| | ||| || |||||||| ||| ||||||| Sbjct: 85149 cgaccacatcagcaacctcccggacgccatccttggcgacatcgtcgcccgcctccccac 85090 Query: 247 caaggacggcgcccgcacccagatnctcgcgtcccggtggcgccacgtctggcgctcc 304 ||| || | || | |||| ||||| ||||| | ||||||||||||| ||||||||||| Sbjct: 85089 caaagaagccggcagcacgcagatcctcgcctgccggtggcgccacatctggcgctcc 85032
>dbj|AP004706.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0683E12 Length = 165766 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 227 atcgtctccctcctccccgtcaaggacggcgcccgcacc 265 |||||||||| |||||||||||||||||||| |||||| Sbjct: 63269 atcgtctcccgtctccccgtcaaggacggcgctcgcacc 63307
>dbj|AP004621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0689D06 Length = 146551 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 227 atcgtctccctcctccccgtcaaggacggcgcccgcacc 265 |||||||||| |||||||||||||||||||| |||||| Sbjct: 71931 atcgtctcccgtctccccgtcaaggacggcgctcgcacc 71969
>ref|NM_186811.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1350 Score = 52.0 bits (26), Expect = 0.001 Identities = 73/89 (82%) Strand = Plus / Plus Query: 217 cctccgccacatcgtctccctcctccccgtcaaggacggcgcccgcacccagatnctcgc 276 ||||||| | |||||| ||| |||||| ||| |||| ||| ||||| ||| | ||| | Sbjct: 114 cctccgcgagatcgtcacccgcctcccatccaacgacgccgctcgcacgcagctgctctc 173 Query: 277 gtcccggtggcgccacgtctggcgctccg 305 ||||||||||||||| |||||||||||| Sbjct: 174 ctcccggtggcgccacctctggcgctccg 202
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 52.0 bits (26), Expect = 0.001 Identities = 73/89 (82%) Strand = Plus / Plus Query: 217 cctccgccacatcgtctccctcctccccgtcaaggacggcgcccgcacccagatnctcgc 276 ||||||| | |||||| ||| |||||| ||| |||| ||| ||||| ||| | ||| | Sbjct: 7982896 cctccgcgagatcgtcacccgcctcccatccaacgacgccgctcgcacgcagctgctctc 7982955 Query: 277 gtcccggtggcgccacgtctggcgctccg 305 ||||||||||||||| |||||||||||| Sbjct: 7982956 ctcccggtggcgccacctctggcgctccg 7982984 Score = 46.1 bits (23), Expect = 0.075 Identities = 41/47 (87%) Strand = Plus / Minus Query: 218 ctccgccacatcgtctccctcctccccgtcaaggacggcgcccgcac 264 ||||||| ||||||||| ||||||||||||||||| ||| ||||| Sbjct: 3539805 ctccgccggatcgtctcctgcctccccgtcaaggacgccgcacgcac 3539759 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Minus Query: 231 tctccctcctccccgtcaaggacggcgcccgcac 264 |||||||||||||| |||||||| ||||||||| Sbjct: 11012870 tctccctcctccccaccaaggacgccgcccgcac 11012837 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Minus Query: 231 tctccctcctccccgtcaaggacggcgcccgcac 264 |||||||||||||| |||||||| ||||||||| Sbjct: 11005250 tctccctcctccccaccaaggacgccgcccgcac 11005217
>dbj|AP003754.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1341_A08 Length = 128955 Score = 52.0 bits (26), Expect = 0.001 Identities = 73/89 (82%) Strand = Plus / Plus Query: 217 cctccgccacatcgtctccctcctccccgtcaaggacggcgcccgcacccagatnctcgc 276 ||||||| | |||||| ||| |||||| ||| |||| ||| ||||| ||| | ||| | Sbjct: 21093 cctccgcgagatcgtcacccgcctcccatccaacgacgccgctcgcacgcagctgctctc 21152 Query: 277 gtcccggtggcgccacgtctggcgctccg 305 ||||||||||||||| |||||||||||| Sbjct: 21153 ctcccggtggcgccacctctggcgctccg 21181
>dbj|AP004382.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0418E08 Length = 141040 Score = 52.0 bits (26), Expect = 0.001 Identities = 73/89 (82%) Strand = Plus / Plus Query: 217 cctccgccacatcgtctccctcctccccgtcaaggacggcgcccgcacccagatnctcgc 276 ||||||| | |||||| ||| |||||| ||| |||| ||| ||||| ||| | ||| | Sbjct: 99255 cctccgcgagatcgtcacccgcctcccatccaacgacgccgctcgcacgcagctgctctc 99314 Query: 277 gtcccggtggcgccacgtctggcgctccg 305 ||||||||||||||| |||||||||||| Sbjct: 99315 ctcccggtggcgccacctctggcgctccg 99343
>ref|NM_191290.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 489 Score = 50.1 bits (25), Expect = 0.005 Identities = 58/69 (84%) Strand = Plus / Plus Query: 184 cgtcgaccgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctccc 243 ||||||||||||||||| ||||| ||||| |||| || | ||||||||| |||||| Sbjct: 186 cgtcgaccgcatcagcaccctccctgacgagctcctcagcaaggtcgtctcccacctccc 245 Query: 244 cgtcaagga 252 ||||||||| Sbjct: 246 cgtcaagga 254
>ref|XM_463368.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1425 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Plus Query: 218 ctccgccacatcgtctccctcctccccgtcaaggacg 254 |||||| |||||||| ||| ||||||||||||||||| Sbjct: 130 ctccgcaacatcgtcgcccgcctccccgtcaaggacg 166
>dbj|AP003375.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1414_E05 Length = 105222 Score = 50.1 bits (25), Expect = 0.005 Identities = 58/69 (84%) Strand = Plus / Minus Query: 184 cgtcgaccgcatcagcaacctccacgacgataacctccgccacatcgtctccctcctccc 243 ||||||||||||||||| ||||| ||||| |||| || | ||||||||| |||||| Sbjct: 36253 cgtcgaccgcatcagcaccctccctgacgagctcctcagcaaggtcgtctcccacctccc 36194 Query: 244 cgtcaagga 252 ||||||||| Sbjct: 36193 cgtcaagga 36185
>dbj|AK069151.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007D17, full insert sequence Length = 1685 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Plus Query: 218 ctccgccacatcgtctccctcctccccgtcaaggacg 254 |||||| |||||||| ||| ||||||||||||||||| Sbjct: 181 ctccgcaacatcgtcgcccgcctccccgtcaaggacg 217
>ref|NM_186455.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1587 Score = 46.1 bits (23), Expect = 0.075 Identities = 41/47 (87%) Strand = Plus / Minus Query: 218 ctccgccacatcgtctccctcctccccgtcaaggacggcgcccgcac 264 ||||||| ||||||||| ||||||||||||||||| ||| ||||| Sbjct: 684 ctccgccggatcgtctcctgcctccccgtcaaggacgccgcacgcac 638
>dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1641_C04 Length = 134367 Score = 46.1 bits (23), Expect = 0.075 Identities = 41/47 (87%) Strand = Plus / Minus Query: 218 ctccgccacatcgtctccctcctccccgtcaaggacggcgcccgcac 264 ||||||| ||||||||| ||||||||||||||||| ||| ||||| Sbjct: 9122 ctccgccggatcgtctcctgcctccccgtcaaggacgccgcacgcac 9076
>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0039H02 Length = 169162 Score = 46.1 bits (23), Expect = 0.075 Identities = 41/47 (87%) Strand = Plus / Minus Query: 218 ctccgccacatcgtctccctcctccccgtcaaggacggcgcccgcac 264 ||||||| ||||||||| ||||||||||||||||| ||| ||||| Sbjct: 77755 ctccgccggatcgtctcctgcctccccgtcaaggacgccgcacgcac 77709
>ref|NM_185301.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1551 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Plus Query: 231 tctccctcctccccgtcaaggacggcgcccgcac 264 |||||||||||||| |||||||| ||||||||| Sbjct: 166 tctccctcctccccaccaaggacgccgcccgcac 199
>ref|XM_472612.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1632 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 281 cggtggcgccacgtctggcgctccgt 306 |||||||||||| ||||||||||||| Sbjct: 154 cggtggcgccacctctggcgctccgt 179
>dbj|AP008980.1| Terrabacter sp. DBF63 plasmid pDBF1 genes, complete and partial cds Length = 70631 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 245 gtcaaggacggcgcccgcacccagat 270 |||||||||| ||||||||||||||| Sbjct: 48535 gtcaaggacgtcgcccgcacccagat 48560
>emb|AL606452.2|OSJN00007 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000114_01, complete sequence Length = 127713 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 281 cggtggcgccacgtctggcgctccgt 306 |||||||||||| ||||||||||||| Sbjct: 101664 cggtggcgccacctctggcgctccgt 101639
>dbj|AB095015.1| Terrabacter sp. DBF63 DNA, angular dioxygenase region Length = 11859 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 245 gtcaaggacggcgcccgcacccagat 270 |||||||||| ||||||||||||||| Sbjct: 3269 gtcaaggacgtcgcccgcacccagat 3294
>dbj|AB054975.1| Terrabacter sp. DBF63 DNA, angular dioxygenase region Length = 8179 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 245 gtcaaggacggcgcccgcacccagat 270 |||||||||| ||||||||||||||| Sbjct: 6108 gtcaaggacgtcgcccgcacccagat 6133
>dbj|AP005106.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0091I19 Length = 126544 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Minus Query: 231 tctccctcctccccgtcaaggacggcgcccgcac 264 |||||||||||||| |||||||| ||||||||| Sbjct: 74813 tctccctcctccccaccaaggacgccgcccgcac 74780 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Minus Query: 231 tctccctcctccccgtcaaggacggcgcccgcac 264 |||||||||||||| |||||||| ||||||||| Sbjct: 67193 tctccctcctccccaccaaggacgccgcccgcac 67160
>dbj|AK108035.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C04, full insert sequence Length = 1551 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Plus Query: 231 tctccctcctccccgtcaaggacggcgcccgcac 264 |||||||||||||| |||||||| ||||||||| Sbjct: 166 tctccctcctccccaccaaggacgccgcccgcac 199
>ref|XM_958485.1| Neurospora crassa OR74A hypothetical protein ( hypothetical protein B24M22.90 [imported] - Neurospora crassa OR74A ) (NCU08717.1) partial mRNA Length = 1665 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 223 ccacatcgtctccctcctccccgtc 247 ||||||| ||||||||||||||||| Sbjct: 81 ccacatcttctccctcctccccgtc 105
>ref|XM_330833.1| Neurospora crassa OR74A hypothetical protein ( hypothetical protein B24M22.90 [imported] - Neurospora crassa OR74A ) (NCU08717.1) partial mRNA Length = 1665 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 223 ccacatcgtctccctcctccccgtc 247 ||||||| ||||||||||||||||| Sbjct: 81 ccacatcttctccctcctccccgtc 105
>emb|AL390354.1|NCB24M22 Neurospora crassa DNA linkage group II BAC contig B24M22 Length = 90558 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 223 ccacatcgtctccctcctccccgtc 247 ||||||| ||||||||||||||||| Sbjct: 30695 ccacatcttctccctcctccccgtc 30671
>gb|AF435854.1| Plasmodium cynomolgi merozoite surface protein-9 precursor, gene, complete cds Length = 2823 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 186 tcgaccgcatcagcaacctcc 206 ||||||||||||||||||||| Sbjct: 1837 tcgaccgcatcagcaacctcc 1817
>ref|NM_194682.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0056A20.11), mRNA Length = 1176 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 cggtggcgccacgtctggcgctcc 304 |||||||||||| ||||||||||| Sbjct: 121 cggtggcgccacctctggcgctcc 144
>ref|XM_472620.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 876 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 cggtggcgccacgtctggcgctcc 304 |||||||||||| ||||||||||| Sbjct: 202 cggtggcgccacctctggcgctcc 225
>gb|AC079128.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0056A20, complete sequence Length = 151163 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 cggtggcgccacgtctggcgctcc 304 |||||||||||| ||||||||||| Sbjct: 62320 cggtggcgccacctctggcgctcc 62297
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 caccagcgccgtgaacaggt 60 |||||||||||||||||||| Sbjct: 981541 caccagcgccgtgaacaggt 981522
>ref|XM_541526.2| PREDICTED: Canis familiaris similar to Caspase recruitment domain protein 8 (Apoptotic protein NDPP1) (DACAR) (CARD-inhibitor of NF-kappaB activating ligand) (CARDINAL) (Tumor-up-regulated CARD-containing antagonist of CASP9) (TUCAN) (LOC484411), mRNA Length = 1632 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 acctccgccacatcgtctccctcc 239 |||||| ||||||||||||||||| Sbjct: 758 acctcccccacatcgtctccctcc 781
>ref|XM_849808.1| PREDICTED: Canis familiaris similar to Caspase recruitment domain protein 8 (Apoptotic protein NDPP1) (DACAR) (CARD-inhibitor of NF-kappaB activating ligand) (CARDINAL) (Tumor-up-regulated CARD-containing antagonist of CASP9) (TUCAN) (LOC491519), mRNA Length = 1701 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 acctccgccacatcgtctccctcc 239 |||||| ||||||||||||||||| Sbjct: 827 acctcccccacatcgtctccctcc 850
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 cggtggcgccacgtctggcgctcc 304 |||||||||||| ||||||||||| Sbjct: 1543747 cggtggcgccacctctggcgctcc 1543724
>emb|BX548156.1|OSJN00292 Oryza sativa genomic DNA, chromosome 4, BAC clone: P0076O17, complete sequence Length = 121130 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 cggtggcgccacgtctggcgctcc 304 |||||||||||| ||||||||||| Sbjct: 39857 cggtggcgccacctctggcgctcc 39834
>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29 Length = 276800 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 157 cgccggaggggaggtagacggagg 180 |||||||||||||||||| ||||| Sbjct: 130754 cgccggaggggaggtagagggagg 130777
>emb|AL662962.3|OSJN00165 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029L02, complete sequence Length = 165786 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 238 cctccccgtcaaggacggcgcccgcacc 265 ||||||| |||||||| ||||||||||| Sbjct: 55128 cctccccttcaaggacagcgcccgcacc 55101
>tpg|BK000809.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M220, complete sequence Length = 1229 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 accgcccgccggaggggagg 170 |||||||||||||||||||| Sbjct: 441 accgcccgccggaggggagg 422
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 cggtggcgccacgtctggcgctcc 304 |||||||||||| ||||||||||| Sbjct: 1543747 cggtggcgccacctctggcgctcc 1543724
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 cgccggaggggaggtagacg 176 |||||||||||||||||||| Sbjct: 20769438 cgccggaggggaggtagacg 20769457
>emb|AL662973.3|OSJN00175 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064D20, complete sequence Length = 99855 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 cggtggcgccacgtctggcgctcc 304 |||||||||||| ||||||||||| Sbjct: 46506 cggtggcgccacctctggcgctcc 46483
>gb|AF402142.1| Hyaloraphidium curvatum mitochondrial DNA, complete genome Length = 29593 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 atacttccaagaagaggaag 31 |||||||||||||||||||| Sbjct: 13739 atacttccaagaagaggaag 13720
>gb|AC147282.3| Pan troglodytes BAC clone RP43-86L11 from chromosome 7, complete sequence Length = 223086 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 ccgccacatcgtctccctcc 239 |||||||||||||||||||| Sbjct: 2114 ccgccacatcgtctccctcc 2133
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 cgccggaggggaggtagacg 176 |||||||||||||||||||| Sbjct: 44467 cgccggaggggaggtagacg 44486
>dbj|AK064648.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-D08, full insert sequence Length = 1685 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 cggtggcgccacgtctggcgctcc 304 |||||||||||| ||||||||||| Sbjct: 283 cggtggcgccacctctggcgctcc 306
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 cggtggcgccacgtctggcgctcc 304 |||||||||||| ||||||||||| Sbjct: 1543744 cggtggcgccacctctggcgctcc 1543721
>emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14, complete sequence Length = 150187 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 accgcccgccggaggggagg 170 |||||||||||||||||||| Sbjct: 61381 accgcccgccggaggggagg 61362
>gb|AY860112.1| Micromonospora sp. ATCC 39149 RpsL (rpsL), RpsG (rpsG), FusA (fusA), Tuf1 (tuf1), RpsJ (rpsJ), RplC (rplC), RplD (rplD), and RplW (rplW) genes, complete cds; and RplB (rplB) gene, partial cds Length = 8196 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 gcaccgccggcgggggcgcc 123 |||||||||||||||||||| Sbjct: 235 gcaccgccggcgggggcgcc 216 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,222,297 Number of Sequences: 3902068 Number of extensions: 2222297 Number of successful extensions: 37929 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37336 Number of HSP's gapped (non-prelim): 588 length of query: 347 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 325 effective length of database: 17,147,199,772 effective search space: 5572839925900 effective search space used: 5572839925900 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
