Clone Name	bah62o16
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	997	0.0
2	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	906	0.0
3	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	783	0.0
4	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	680	0.0
5	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	430	e-117
6	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	410	e-111
7	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	355	9e-95
8	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	355	9e-95
9	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	355	9e-95
10	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	355	9e-95
11	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	355	9e-95
12	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	355	9e-95
13	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	347	2e-92
14	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	347	2e-92
15	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	305	8e-80
16	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	297	2e-77
17	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	220	4e-54
18	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	200	3e-48
19	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	200	3e-48
20	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	200	3e-48
21	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	200	3e-48
22	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	196	5e-47
23	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	172	7e-40
24	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	172	7e-40
25	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	172	7e-40
26	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	159	1e-35
27	gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph...	129	1e-26
28	gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precurso...	129	1e-26
29	ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	115	1e-22
30	ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	115	1e-22
31	ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	115	1e-22
32	gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890)...	115	1e-22
33	gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730...	115	1e-22
34	gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, comp...	115	1e-22
35	gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, compl...	115	1e-22
36	gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, compl...	115	1e-22
37	gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730...	115	1e-22
38	gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete se...	115	1e-22
39	gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox...	109	9e-21
40	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	107	4e-20
41	emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphospha...	105	1e-19
42	gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase m...	103	6e-19
43	gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precur...	101	2e-18
44	gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA...	98	3e-17
45	emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase	96	1e-16
46	gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds	96	1e-16
47	gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carb...	94	5e-16
48	gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence	94	5e-16
49	gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec...	92	2e-15
50	gb|AY312575.1| Larrea tridentata Rubisco activase alpha form pre...	92	2e-15
51	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	88	3e-14
52	emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubis...	86	1e-13
53	gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosph...	86	1e-13
54	gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1...	84	5e-13
55	gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map ...	78	3e-11
56	gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphospha...	78	3e-11
57	gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, c...	68	3e-08
58	gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precur...	68	3e-08
59	gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/...	62	2e-06
60	gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete se...	56	1e-04
61	emb|Y10657.1|CLRCAGENE C.littorale rca gene	56	1e-04
62	gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ...	46	0.11
63	gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate car...	46	0.11
64	gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome	44	0.45
65	gb|AE015925.1| Chlamydophila caviae GPIC, complete genome	44	0.45
66	emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA	42	1.8
67	emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA	42	1.8
68	emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA	42	1.8
69	emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA	42	1.8
70	emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA	42	1.8
71	gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome	40	7.1
72	gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 ...	40	7.1
73	gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of t...	40	7.1
74	gb|CP000110.1| Synechococcus sp. CC9605, complete genome	40	7.1
75	ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867...	40	7.1
76	ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrot...	40	7.1
77	ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphop...	40	7.1
78	gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co...	40	7.1
79	gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence	40	7.1
80	gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome	40	7.1
81	ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-ass...	40	7.1
82	gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphopro...	40	7.1
83	ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain h...	40	7.1
84	gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite...	40	7.1
85	gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite...	40	7.1
86	ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical ...	40	7.1
87	gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphopro...	40	7.1
88	gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, com...	40	7.1
89	emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chr...	40	7.1
90	emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on ch...	40	7.1
91	gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and co...	40	7.1
92	gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, co...	40	7.1
93	emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta ...	40	7.1
94	dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE60023...	40	7.1
95	gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, comple...	40	7.1
96	gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-4...	40	7.1
97	gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, com...	40	7.1
98	gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, co...	40	7.1
99	gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome...	40	7.1
100	gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 ...	40	7.1
101	gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds	40	7.1
102	gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana...	40	7.1
103	dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome	40	7.1
104	gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I...	40	7.1
105	gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209....	40	7.1
106	emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chr...	40	7.1
107	gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana...	40	7.1
108	gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, comple...	40	7.1
109	gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Canc...	40	7.1
110	dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds	40	7.1
111	dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:R...	40	7.1
112	emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,...	40	7.1
113	gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge...	40	7.1
114	gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltrans...	40	7.1
115	gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila No...	40	7.1
116	emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein...	40	7.1

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  997 bits (503), Expect = 0.0
 Identities = 519/523 (99%), Gaps = 1/523 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatggct 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 89  agcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatggct 147

                                                                       
Query: 61  gctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaag 207

                                                                       
Query: 121 aagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaac 267

                                                                       
Query: 181 aggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaag 327

                                                                       
Query: 241 ggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtg 300
           ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggtcttgctaccgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtg 387

                                                                       
Query: 301 gactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctac 447

                                                                       
Query: 361 gagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctac 507

                                                                       
Query: 421 atcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctg 567

                                                      
Query: 481 cccaacatcaagatcccactcatcttgggtatctggggaggca 523
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cccaacatcaagatcccactcatcttgggtatctggggaggca 610

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  906 bits (457), Expect = 0.0
 Identities = 499/513 (97%)
 Strand = Plus / Plus

                                                                       
Query: 11  cgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatggctgctgccttct 70
           ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 18  cgcgcatccaccgctgctagcaaggtcgagcaagcagcacagagatggctgctgccttct 77

                                                                       
Query: 71  cctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaagaagctcaaga 130
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  cctccaccgtcggtgccccggcttctacgccgaccaacttcctcgggaagaagctcaaga 137

                                                                       
Query: 131 agcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcacag 190
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 138 agcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcacgg 197

                                                                       
Query: 191 tcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgt 250
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tcatggcagcggaaaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgt 257

                                                                       
Query: 251 acgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctct 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 258 acgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactccctct 317

                                                                       
Query: 311 tccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtacgtca 370
           ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 318 tccaggcgcccactggcgacggcacccacgaggccgtcctcagctcatacgagtacgtca 377

                                                                       
Query: 371 gccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcgctcctg 430
           ||||||| ||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gccagggactcaagaagtacgacttcgacaacaccatgggaggcttctacatcgctcctg 437

                                                                       
Query: 431 ctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatca 490
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 438 ctttcatggacaagcttgttgtccatctctccaagaacttcatgaccctgcccaacatca 497

                                            
Query: 491 agatcccactcatcttgggtatctggggaggca 523
           |||||||||||||||||||||||||||||||||
Sbjct: 498 agatcccactcatcttgggtatctggggaggca 530

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  783 bits (395), Expect = 0.0
 Identities = 401/403 (99%)
 Strand = Plus / Plus

                                                                        
Query: 90   ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577

                                                                        
Query: 150  gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5578 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 5637

                                                                        
Query: 210  cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 269
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5638 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 5697

                                                                        
Query: 270  gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacgggcga 329
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 5698 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggggca 5757

                                                                        
Query: 330  cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 389
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5758 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 5817

                                                                        
Query: 390  cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5818 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 5877

                                                       
Query: 450  tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 492
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5878 tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 5920



 Score =  297 bits (150), Expect = 2e-77
 Identities = 255/290 (87%)
 Strand = Plus / Plus

                                                                        
Query: 234  gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 293
            |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998

                                                                        
Query: 294  catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 353
            |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| ||
Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058

                                                                        
Query: 354  ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 413
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 3059 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 3118

                                                                        
Query: 414  cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 473
              | |||||||| || || ||||||||||||||  | ||||| ||| |||| ||||||||
Sbjct: 3119 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 3178

                                                              
Query: 474  gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
            ||| || |||||||||||| | || |||||| ||||||||||||||||||
Sbjct: 3179 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggca 3228



 Score =  165 bits (83), Expect = 2e-37
 Identities = 90/91 (98%), Gaps = 1/91 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    agcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatggct 60
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5309 agcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatggct 5367

                                           
Query: 61   gctgccttctcctccaccgtcggggctccgg 91
            |||||||||||||||||||||||||||||||
Sbjct: 5368 gctgccttctcctccaccgtcggggctccgg 5398



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                             
Query: 491  agatcccactcatcttgggtatctggggaggca 523
            |||||||||||||||||||||||||||||||||
Sbjct: 6070 agatcccactcatcttgggtatctggggaggca 6102

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  680 bits (343), Expect = 0.0
 Identities = 352/355 (99%)
 Strand = Plus / Plus

                                                                       
Query: 169 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 60

                                                                       
Query: 229 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 288
           ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 61  gacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagaggg 120

                                                                       
Query: 289 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 180

                                                                       
Query: 349 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 240

                                                                       
Query: 409 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 300

                                                                  
Query: 469 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 355

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  430 bits (217), Expect = e-117
 Identities = 274/293 (93%)
 Strand = Plus / Plus

                                                                       
Query: 229 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 288
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316

                                                                       
Query: 289 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 348
           ||||| ||||| ||||| || ||||||||||||| |||||| ||||||||||||||||||
Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376

                                                                       
Query: 349 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 408
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 377 ctcagctcctacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 436

                                                                       
Query: 409 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 468
           ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| |||
Sbjct: 437 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 496

                                                                
Query: 469 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggagg 521
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggagg 549



 Score =  228 bits (115), Expect = 1e-56
 Identities = 139/147 (94%)
 Strand = Plus / Plus

                                                                       
Query: 51  agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 110
           ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct: 76  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagctt 135

                                                                       
Query: 111 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 170
           |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 136 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 195

                                      
Query: 171 caaggccaacaggttcacagtcatggc 197
           |||||||||||||||||| ||||||||
Sbjct: 196 caaggccaacaggttcaccgtcatggc 222

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  410 bits (207), Expect = e-111
 Identities = 271/293 (92%)
 Strand = Plus / Plus

                                                                       
Query: 229 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 288
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306

                                                                       
Query: 289 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 348
           ||||| ||||| |||||  | ||||||||||||| |||||| || |||||||||||||||
Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366

                                                                       
Query: 349 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 408
           |||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 367 ctcagctcntacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 426

                                                                       
Query: 409 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 468
           ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| |||
Sbjct: 427 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 486

                                                                
Query: 469 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggagg 521
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggagg 539



 Score =  222 bits (112), Expect = 9e-55
 Identities = 138/147 (93%)
 Strand = Plus / Plus

                                                                       
Query: 51  agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 110
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |||
Sbjct: 66  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagctt 125

                                                                       
Query: 111 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 170
           |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 126 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 185

                                      
Query: 171 caaggccaacaggttcacagtcatggc 197
           |||||||||||||||||| ||||||||
Sbjct: 186 caaggccaacaggttcaccgtcatggc 212

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for
           ribulose-bisphosphate carboxylase activase large isoform
           precursor protein, complete cds, clone: 13YPR038
          Length = 1558

 Score =  355 bits (179), Expect = 9e-95
 Identities = 266/295 (90%)
 Strand = Plus / Plus

                                                                       
Query: 229 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 288
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263

                                                                       
Query: 289 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 348
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323

                                                                       
Query: 349 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 408
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 324 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 383

                                                                       
Query: 409 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 468
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 384 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 443

                                                                  
Query: 469 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 444 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggca 498



 Score =  172 bits (87), Expect = 7e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 53  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 112
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 25  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 84

                                                                       
Query: 113 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 172
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 85  tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 144

                          
Query: 173 aggccaacaggttca 187
           |   |||||||||||
Sbjct: 145 acatcaacaggttca 159

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
           insert sequence
          Length = 1680

 Score =  355 bits (179), Expect = 9e-95
 Identities = 266/295 (90%)
 Strand = Plus / Plus

                                                                       
Query: 229 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 288
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300

                                                                       
Query: 289 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 348
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360

                                                                       
Query: 349 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 408
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 361 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 420

                                                                       
Query: 409 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 468
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 421 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 480

                                                                  
Query: 469 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 481 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggca 535



 Score =  172 bits (87), Expect = 7e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 53  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 112
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 62  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 121

                                                                       
Query: 113 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 172
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 122 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 181

                          
Query: 173 aggccaacaggttca 187
           |   |||||||||||
Sbjct: 182 acatcaacaggttca 196

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
           insert sequence
          Length = 1691

 Score =  355 bits (179), Expect = 9e-95
 Identities = 266/295 (90%)
 Strand = Plus / Plus

                                                                       
Query: 229 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 288
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                                                                       
Query: 289 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 348
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359

                                                                       
Query: 349 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 408
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 360 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 419

                                                                       
Query: 409 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 468
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 420 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 479

                                                                  
Query: 469 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 480 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggca 534



 Score =  172 bits (87), Expect = 7e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 53  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 112
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                                                                       
Query: 113 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 172
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180

                          
Query: 173 aggccaacaggttca 187
           |   |||||||||||
Sbjct: 181 acatcaacaggttca 195

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
           insert sequence
          Length = 1470

 Score =  355 bits (179), Expect = 9e-95
 Identities = 266/295 (90%)
 Strand = Plus / Plus

                                                                       
Query: 229 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 288
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 24  gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83

                                                                       
Query: 289 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 348
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 84  aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143

                                                                       
Query: 349 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 408
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 144 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 203

                                                                       
Query: 409 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 468
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 204 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 263

                                                                  
Query: 469 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 264 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggca 318

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
           precursor, complete cds
          Length = 1706

 Score =  355 bits (179), Expect = 9e-95
 Identities = 266/295 (90%)
 Strand = Plus / Plus

                                                                       
Query: 229 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 288
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304

                                                                       
Query: 289 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 348
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364

                                                                       
Query: 349 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 408
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 365 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 424

                                                                       
Query: 409 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 468
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 425 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 484

                                                                  
Query: 469 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 485 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggca 539



 Score =  165 bits (83), Expect = 2e-37
 Identities = 122/135 (90%)
 Strand = Plus / Plus

                                                                       
Query: 53  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 112
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 66  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 125

                                                                       
Query: 113 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 172
           | ||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 126 tggggaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaagagctcca 185

                          
Query: 173 aggccaacaggttca 187
           |   |||||||||||
Sbjct: 186 acatcaacaggttca 200

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
           precursor, complete cds
          Length = 1623

 Score =  355 bits (179), Expect = 9e-95
 Identities = 266/295 (90%)
 Strand = Plus / Plus

                                                                       
Query: 229 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 288
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298

                                                                       
Query: 289 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 348
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358

                                                                       
Query: 349 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 408
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 359 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 418

                                                                       
Query: 409 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 468
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 419 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 478

                                                                  
Query: 469 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 479 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggca 533



 Score =  172 bits (87), Expect = 7e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 53  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 112
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 60  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 119

                                                                       
Query: 113 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 172
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 120 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 179

                          
Query: 173 aggccaacaggttca 187
           |   |||||||||||
Sbjct: 180 acatcaacaggttca 194

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase (rca) mRNA, complete cds
          Length = 1675

 Score =  347 bits (175), Expect = 2e-92
 Identities = 265/295 (89%)
 Strand = Plus / Plus

                                                                       
Query: 229 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 288
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271

                                                                       
Query: 289 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 348
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331

                                                                       
Query: 349 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 408
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 332 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 391

                                                                       
Query: 409 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 468
           ||||||||||||||||| ||| |||||||||||||||| || |||||  ||||||| |||
Sbjct: 392 ggaggcttctacatcgccccttctttcatggacaagctcgtcgtccacatctccaagaac 451

                                                                  
Query: 469 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 452 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggca 506



 Score =  172 bits (87), Expect = 7e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 53  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 112
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 33  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 92

                                                                       
Query: 113 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 172
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 93  tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 152

                          
Query: 173 aggccaacaggttca 187
           |   |||||||||||
Sbjct: 153 acatcaacaggttca 167

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
           insert sequence
          Length = 1721

 Score =  347 bits (175), Expect = 2e-92
 Identities = 265/295 (89%)
 Strand = Plus / Plus

                                                                       
Query: 229 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 288
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311

                                                                       
Query: 289 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 348
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371

                                                                       
Query: 349 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 408
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 372 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 431

                                                                       
Query: 409 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 468
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 432 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 491

                                                                  
Query: 469 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           ||||||||||| |||||||||||| ||||||||| | ||||||||||||||||||
Sbjct: 492 ttcatgaccctccccaacatcaaggtcccactcaccctgggtatctggggaggca 546



 Score =  172 bits (87), Expect = 7e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 53  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 112
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 73  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 132

                                                                       
Query: 113 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 172
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 133 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 192

                          
Query: 173 aggccaacaggttca 187
           |   |||||||||||
Sbjct: 193 acatcaacaggttca 207

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B
           (RcaB) mRNA, complete cds; nuclear gene for chloroplast
           product
          Length = 1525

 Score =  305 bits (154), Expect = 8e-80
 Identities = 256/290 (88%)
 Strand = Plus / Plus

                                                                       
Query: 234 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 293
           |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| ||
Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276

                                                                       
Query: 294 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 353
           |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| ||
Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336

                                                                       
Query: 354 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 413
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||  ||
Sbjct: 337 ctcctacgagtacatcagccagggcctgcgcaagtacgacttcgacaacaccatggacgg 396

                                                                       
Query: 414 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 473
             | |||||||| || || ||||||||||||||  | ||||| ||| |||| ||||||||
Sbjct: 397 gctgtacatcgccccggcgttcatggacaagctcatcgtccacctcgccaagaacttcat 456

                                                             
Query: 474 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           ||| || |||||||||||| |||| |||||| ||||||||||||||||||
Sbjct: 457 gacactccccaacatcaaggtccctctcatcctgggtatctggggaggca 506



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 72/83 (86%)
 Strand = Plus / Plus

                                                                       
Query: 54  gatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcct 113
           ||||||| |||| ||||| |||||||| || |||||||| || || ||||||| ||||||
Sbjct: 25  gatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcct 84

                                  
Query: 114 cgggaagaagctcaagaagcagg 136
           |||||||||| | ||||||||||
Sbjct: 85  cgggaagaaggtgaagaagcagg 107

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score =  297 bits (150), Expect = 2e-77
 Identities = 255/290 (87%)
 Strand = Plus / Plus

                                                                       
Query: 234 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 293
           |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429

                                                                       
Query: 294 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 353
           |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| ||
Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489

                                                                       
Query: 354 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 413
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 490 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 549

                                                                       
Query: 414 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 473
             | |||||||| || || ||||||||||||||  | ||||| ||| |||| ||||||||
Sbjct: 550 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 609

                                                             
Query: 474 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           ||| || |||||||||||| | || |||||| ||||||||||||||||||
Sbjct: 610 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggca 659

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
           insert sequence
          Length = 1682

 Score =  220 bits (111), Expect = 4e-54
 Identities = 156/171 (91%)
 Strand = Plus / Plus

                                                                       
Query: 353 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 412
           |||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||||||
Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386

                                                                       
Query: 413 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttca 472
           ||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||||||
Sbjct: 387 gcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttca 446

                                                              
Query: 473 tgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           ||||||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 447 tgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggca 497



 Score =  172 bits (87), Expect = 7e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 53  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 112
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                                                                       
Query: 113 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 172
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180

                          
Query: 173 aggccaacaggttca 187
           |   |||||||||||
Sbjct: 181 acatcaacaggttca 195



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 78/89 (87%)
 Strand = Plus / Plus

                                                                       
Query: 229 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 288
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                                        
Query: 289 aagggcatcgtggactcgctcttccaggc 317
           |||||  |||| ||||| || ||||||||
Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  200 bits (101), Expect = 3e-48
 Identities = 128/137 (93%)
 Strand = Plus / Minus

                                                                          
Query: 387    gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 446
              ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 109376

                                                                          
Query: 447    tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 506
               || |||||  ||||||| |||||||||||||| |||||||||||| ||||||||||| |
Sbjct: 109375 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 109316

                               
Query: 507    gggtatctggggaggca 523
              |||||||||||||||||
Sbjct: 109315 gggtatctggggaggca 109299



 Score =  176 bits (89), Expect = 5e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                          
Query: 229    gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 288
              |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647

                                                                          
Query: 289    aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 348
              |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587

                                           
Query: 349    ctcagctcctacgagtacgtcagccaggg 377
              |||||||||||||||||| ||||||||||
Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558



 Score =  125 bits (63), Expect = 2e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                          
Query: 234    gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 293
              ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146

                                                                 
Query: 294    catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 344
              | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095



 Score =  119 bits (60), Expect = 1e-23
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                          
Query: 100    ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 159
              |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779

                                          
Query: 160    ggcaagagctccaaggccaacaggttca 187
              ||||||||||||||   |||||||||||
Sbjct: 109778 ggcaagagctccaacatcaacaggttca 109751



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                     
Query: 53     agatggctgctgccttctcctccaccgtcggggctccgg 91
              |||||||||||||||||||||||||||| || |||||||
Sbjct: 109984 agatggctgctgccttctcctccaccgttggagctccgg 109946

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  200 bits (101), Expect = 3e-48
 Identities = 128/137 (93%)
 Strand = Plus / Minus

                                                                         
Query: 387   gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 446
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 31253

                                                                         
Query: 447   tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 506
              || |||||  ||||||| |||||||||||||| |||||||||||| ||||||||||| |
Sbjct: 31252 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 31193

                              
Query: 507   gggtatctggggaggca 523
             |||||||||||||||||
Sbjct: 31192 gggtatctggggaggca 31176



 Score =  176 bits (89), Expect = 5e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                         
Query: 229   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 288
             |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524

                                                                         
Query: 289   aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 348
             |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464

                                          
Query: 349   ctcagctcctacgagtacgtcagccaggg 377
             |||||||||||||||||| ||||||||||
Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435



 Score =  125 bits (63), Expect = 2e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                         
Query: 234   gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 293
             ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023

                                                                
Query: 294   catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 344
             | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972



 Score =  119 bits (60), Expect = 1e-23
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                         
Query: 100   ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 159
             |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656

                                         
Query: 160   ggcaagagctccaaggccaacaggttca 187
             ||||||||||||||   |||||||||||
Sbjct: 31655 ggcaagagctccaacatcaacaggttca 31628



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 53    agatggctgctgccttctcctccaccgtcggggctccgg 91
             |||||||||||||||||||||||||||| || |||||||
Sbjct: 31861 agatggctgctgccttctcctccaccgttggagctccgg 31823

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  200 bits (101), Expect = 3e-48
 Identities = 128/137 (93%)
 Strand = Plus / Minus

                                                                            
Query: 387      gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 446
                ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28304515

                                                                            
Query: 447      tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 506
                 || |||||  ||||||| |||||||||||||| |||||||||||| ||||||||||| |
Sbjct: 28304514 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28304455

                                 
Query: 507      gggtatctggggaggca 523
                |||||||||||||||||
Sbjct: 28304454 gggtatctggggaggca 28304438



 Score =  176 bits (89), Expect = 5e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                            
Query: 229      gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 288
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786

                                                                            
Query: 289      aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 348
                |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726

                                             
Query: 349      ctcagctcctacgagtacgtcagccaggg 377
                |||||||||||||||||| ||||||||||
Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697



 Score =  125 bits (63), Expect = 2e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                            
Query: 234      gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 293
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285

                                                                   
Query: 294      catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 344
                | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234



 Score =  119 bits (60), Expect = 1e-23
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 100      ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 159
                |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918

                                            
Query: 160      ggcaagagctccaaggccaacaggttca 187
                ||||||||||||||   |||||||||||
Sbjct: 28304917 ggcaagagctccaacatcaacaggttca 28304890



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 53       agatggctgctgccttctcctccaccgtcggggctccgg 91
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28305123 agatggctgctgccttctcctccaccgttggagctccgg 28305085

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  200 bits (101), Expect = 3e-48
 Identities = 128/137 (93%)
 Strand = Plus / Minus

                                                                            
Query: 387      gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 446
                ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28286964

                                                                            
Query: 447      tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 506
                 || |||||  ||||||| |||||||||||||| |||||||||||| ||||||||||| |
Sbjct: 28286963 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28286904

                                 
Query: 507      gggtatctggggaggca 523
                |||||||||||||||||
Sbjct: 28286903 gggtatctggggaggca 28286887



 Score =  176 bits (89), Expect = 5e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                            
Query: 229      gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 288
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235

                                                                            
Query: 289      aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 348
                |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175

                                             
Query: 349      ctcagctcctacgagtacgtcagccaggg 377
                |||||||||||||||||| ||||||||||
Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146



 Score =  125 bits (63), Expect = 2e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                            
Query: 234      gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 293
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734

                                                                   
Query: 294      catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 344
                | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683



 Score =  119 bits (60), Expect = 1e-23
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 100      ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 159
                |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367

                                            
Query: 160      ggcaagagctccaaggccaacaggttca 187
                ||||||||||||||   |||||||||||
Sbjct: 28287366 ggcaagagctccaacatcaacaggttca 28287339



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 53       agatggctgctgccttctcctccaccgtcggggctccgg 91
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28287572 agatggctgctgccttctcctccaccgttggagctccgg 28287534

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
           precursor (rca1) mRNA, complete cds
          Length = 1424

 Score =  196 bits (99), Expect = 5e-47
 Identities = 246/295 (83%)
 Strand = Plus / Plus

                                                                       
Query: 229 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 288
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                                                                       
Query: 289 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 348
           |||||| |||| |||   |||||||||||||| | ||| |||||||||||||  ||||| 
Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332

                                                                       
Query: 349 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 408
           |||||||||||||| ||| ||||||||||||    |   ||| ||||||||||||  |||
Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392

                                                                       
Query: 409 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 468
           |  ||||||||||| ||    |  |||||||||||||| || ||||| |||||||| |||
Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452

                                                                  
Query: 469 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           |||||||||||||| ||||||||| | || |||||| ||||||||||||||||||
Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatctggggaggca 507



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 107/127 (84%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 55  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 108
           ||||| || |||||||||||||||||||| |||||||| || || |||||||       |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                                                                       
Query: 109 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 165
           |||||||||||||||||||| ||||   ||||| || ||||||||| |||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140

                  
Query: 166 agctcca 172
           |||||||
Sbjct: 141 agctcca 147

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score =  172 bits (87), Expect = 7e-40
 Identities = 216/259 (83%)
 Strand = Plus / Plus

                                                                       
Query: 265 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 324
           |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| |
Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294

                                                                       
Query: 325 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 384
           |||||||| |||||| |  ||||||| ||||||||||||||| |||||   || || || 
Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 354

                                                                       
Query: 385 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 444
             || | |||| ||||||||| ||   || || ||||||||||| || ||||||||||||
Sbjct: 355 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 414

                                                                       
Query: 445 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 504
           ||||| || ||  || |||| |||||||||| | |||||||||||||||| || ||||| 
Sbjct: 415 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 474

                              
Query: 505 ttgggtatctggggaggca 523
           |||||||||||||||||||
Sbjct: 475 ttgggtatctggggaggca 493

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score =  172 bits (87), Expect = 7e-40
 Identities = 216/259 (83%)
 Strand = Plus / Plus

                                                                       
Query: 265 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 324
           |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| |
Sbjct: 98  gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157

                                                                       
Query: 325 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 384
           |||||||| |||||| |  ||||||| ||||||||||||||| |||||   || || || 
Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 217

                                                                       
Query: 385 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 444
             || | |||| ||||||||| ||   || || ||||||||||| || ||||||||||||
Sbjct: 218 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 277

                                                                       
Query: 445 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 504
           ||||| || ||  || |||| |||||||||| | |||||||||||||||| || ||||| 
Sbjct: 278 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 337

                              
Query: 505 ttgggtatctggggaggca 523
           |||||||||||||||||||
Sbjct: 338 ttgggtatctggggaggca 356

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score =  172 bits (87), Expect = 7e-40
 Identities = 216/259 (83%)
 Strand = Plus / Plus

                                                                       
Query: 265 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 324
           |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| |
Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187

                                                                       
Query: 325 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 384
           |||||||| |||||| |  ||||||| ||||||||||||||| |||||   || || || 
Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 247

                                                                       
Query: 385 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 444
             || | |||| ||||||||| ||   || || ||||||||||| || ||||||||||||
Sbjct: 248 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 307

                                                                       
Query: 445 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 504
           ||||| || ||  || |||| |||||||||| | |||||||||||||||| || ||||| 
Sbjct: 308 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 367

                              
Query: 505 ttgggtatctggggaggca 523
           |||||||||||||||||||
Sbjct: 368 ttgggtatctggggaggca 386

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score =  159 bits (80), Expect = 1e-35
 Identities = 240/295 (81%)
 Strand = Plus / Plus

                                                                       
Query: 229 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 288
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                                                                       
Query: 289 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 348
           |||||| |||| |||   |||||||||||||| |      ||||||||||||  ||||| 
Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332

                                                                       
Query: 349 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 408
           |||||||||||||| ||| ||||||||||||    |   ||| ||||||||||||  |||
Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392

                                                                       
Query: 409 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 468
           |  ||||||||||| ||    |  |||||||||||||| || ||||| |||||||| |||
Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452

                                                                  
Query: 469 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           |||||||||||||| ||||||||| | || |||||| ||||||||  ||||||||
Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatcgtgggaggca 507



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 107/127 (84%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 55  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 108
           ||||| || |||||||||||||||||||| |||||||| || || |||||||       |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                                                                       
Query: 109 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 165
           |||||||||||||||||||| ||||   ||||| || ||||||||| |||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140

                  
Query: 166 agctcca 172
           |||||||
Sbjct: 141 agctcca 147

---

>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 1 mRNA, complete cds
          Length = 1559

 Score =  129 bits (65), Expect = 1e-26
 Identities = 233/289 (80%)
 Strand = Plus / Plus

                                                                       
Query: 235 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggc 294
           |||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| || 
Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaaaggt 339

                                                                       
Query: 295 atcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 354
           || || |||||  | ||||| || |||| |  ||| || || ||| | || ||| | |||
Sbjct: 340 atggtcgactcattgttccaagctcccatgaacgatggtactcactatgctgtcatgagc 399

                                                                       
Query: 355 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 414
           ||||| |||||| | ||||| ||||| || |  |||||||| ||||||| |||||  || 
Sbjct: 400 tcctatgagtacattagccaaggccttcgcacatacgacttggacaacaacatggatgga 459

                                                                       
Query: 415 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 474
           |||||||| || || ||||||||||||||||||||||| ||  || |||| |||| ||||
Sbjct: 460 ttctacattgccccagctttcatggacaagcttgttgttcacatcaccaagaactacatg 519

                                                            
Query: 475 accctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           ||||| || ||||| ||| | || || ||||||||||| ||||||||||
Sbjct: 520 acccttcctaacattaaggttcctcttatcttgggtatttggggaggca 568

---

>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete
           cds
          Length = 1674

 Score =  129 bits (65), Expect = 1e-26
 Identities = 143/169 (84%)
 Strand = Plus / Plus

                                                                       
Query: 355 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 414
           |||||||| ||||||||||| || || ||  ||||| |||| |||||||   |||  || 
Sbjct: 396 tcctacgaatacgtcagccaaggtcttcgccagtacaacttggacaacaagttggacgga 455

                                                                       
Query: 415 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 474
           |||||||||||||||||||||||||||||||||||||| ||  || |||| |||||| ||
Sbjct: 456 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttg 515

                                                            
Query: 475 accctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           |   |||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct: 516 aaattgcccaacatcaaggttccacttatcttgggtatctggggaggca 564

---

>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
           transcript variant AT2G39730.2 mRNA, complete cds
          Length = 1815

 Score =  115 bits (58), Expect = 1e-22
 Identities = 148/178 (83%)
 Strand = Plus / Plus

                                                                       
Query: 346 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 405
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555

                                                                       
Query: 406 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 465
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615

                                                                     
Query: 466 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||
Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggca 673

---

>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
           transcript variant AT2G39730.3 mRNA, complete cds
          Length = 1928

 Score =  115 bits (58), Expect = 1e-22
 Identities = 148/178 (83%)
 Strand = Plus / Plus

                                                                       
Query: 346 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 405
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555

                                                                       
Query: 406 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 465
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615

                                                                     
Query: 466 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||
Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggca 673

---

>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
           transcript variant AT2G39730.1 mRNA, complete cds
          Length = 1833

 Score =  115 bits (58), Expect = 1e-22
 Identities = 148/178 (83%)
 Strand = Plus / Plus

                                                                       
Query: 346 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 405
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584

                                                                       
Query: 406 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 465
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644

                                                                     
Query: 466 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||
Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggca 702

---

>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein
           (At2g39730) mRNA, complete cds
          Length = 1697

 Score =  115 bits (58), Expect = 1e-22
 Identities = 148/178 (83%)
 Strand = Plus / Plus

                                                                       
Query: 346 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 405
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466

                                                                       
Query: 406 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 465
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526

                                                                     
Query: 466 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||
Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggca 584

---

>gb|BT000613.1| Arabidopsis thaliana Rubsico activase  (At2g39730/T5I7.3) mRNA,
           complete cds
          Length = 1425

 Score =  115 bits (58), Expect = 1e-22
 Identities = 148/178 (83%)
 Strand = Plus / Plus

                                                                       
Query: 346 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 405
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 322 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 381

                                                                       
Query: 406 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 465
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 382 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 441

                                                                     
Query: 466 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||
Sbjct: 442 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggca 499

---

>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds
          Length = 1674

 Score =  115 bits (58), Expect = 1e-22
 Identities = 148/178 (83%)
 Strand = Plus / Plus

                                                                       
Query: 346 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 405
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469

                                                                       
Query: 406 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 465
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529

                                                                     
Query: 466 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||
Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggca 587

---

>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds
          Length = 1693

 Score =  115 bits (58), Expect = 1e-22
 Identities = 148/178 (83%)
 Strand = Plus / Plus

                                                                       
Query: 346 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 405
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 399 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 458

                                                                       
Query: 406 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 465
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 459 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 518

                                                                     
Query: 466 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||
Sbjct: 519 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggca 576

---

>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds
          Length = 1655

 Score =  115 bits (58), Expect = 1e-22
 Identities = 148/178 (83%)
 Strand = Plus / Plus

                                                                       
Query: 346 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 405
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466

                                                                       
Query: 406 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 465
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526

                                                                     
Query: 466 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||
Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggca 584

---

>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete
           cds
          Length = 1674

 Score =  115 bits (58), Expect = 1e-22
 Identities = 148/178 (83%)
 Strand = Plus / Plus

                                                                       
Query: 346 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 405
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469

                                                                       
Query: 406 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 465
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529

                                                                     
Query: 466 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||
Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggca 587

---

>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence
          Length = 1787

 Score =  115 bits (58), Expect = 1e-22
 Identities = 148/178 (83%)
 Strand = Plus / Plus

                                                                       
Query: 346 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 405
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584

                                                                       
Query: 406 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 465
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644

                                                                     
Query: 466 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||
Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggca 702

---

>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score =  109 bits (55), Expect = 9e-21
 Identities = 82/91 (90%)
 Strand = Plus / Plus

                                                                       
Query: 433 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 492
           |||||||||||||| || ||||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 22  ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 81

                                          
Query: 493 atcccactcatcttgggtatctggggaggca 523
            | || |||||| ||||||||||||||||||
Sbjct: 82  gttcccctcatcctgggtatctggggaggca 112

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score =  107 bits (54), Expect = 4e-20
 Identities = 93/106 (87%)
 Strand = Plus / Plus

                                                                       
Query: 418 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 477
           ||||||||||| || ||||||||||||||||| || ||  || |||| |||||||||| |
Sbjct: 87  tacatcgctccggccttcatggacaagcttgtcgttcacatcaccaagaacttcatgaac 146

                                                         
Query: 478 ctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
            |||||||||||||||| || ||||| |||||||||||||||||||
Sbjct: 147 ttgcccaacatcaagattcctctcattttgggtatctggggaggca 192

---

>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase
           (pJQ4)
          Length = 1655

 Score =  105 bits (53), Expect = 1e-19
 Identities = 95/109 (87%)
 Strand = Plus / Plus

                                                                       
Query: 415 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 474
           ||||||||||||||| |||||||||||||||||||||| ||  || |||| |||||| ||
Sbjct: 426 ttctacatcgctccttctttcatggacaagcttgttgttcacatcaccaagaacttcttg 485

                                                            
Query: 475 accctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           |   |||||||||||||| | |||||||| |||||| ||||||||||||
Sbjct: 486 aaattgcccaacatcaaggttccactcattttgggtgtctggggaggca 534

---

>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds
          Length = 1656

 Score =  103 bits (52), Expect = 6e-19
 Identities = 97/112 (86%)
 Strand = Plus / Plus

                                                                       
Query: 412 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 471
           ||||||||||| || ||||||||||||||||| |||||||| ||  || |||| ||||||
Sbjct: 434 ggcttctacattgcccctgctttcatggacaaacttgttgttcacatcaccaagaacttc 493

                                                               
Query: 472 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
            ||||  |||||||||||||| | ||||||||||||||| | ||||||||||
Sbjct: 494 ttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggca 545

---

>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds
          Length = 1634

 Score =  101 bits (51), Expect = 2e-18
 Identities = 93/107 (86%)
 Strand = Plus / Plus

                                                                       
Query: 415 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 474
           |||||||| ||||| |||||||||||||||||||| || ||  || ||||||||||||||
Sbjct: 476 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 535

                                                          
Query: 475 accctgcccaacatcaagatcccactcatcttgggtatctggggagg 521
           || || |||||||| ||| | || ||||| |||||||||||||||||
Sbjct: 536 actctccccaacataaaggttcctctcattttgggtatctggggagg 582

---

>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear
           gene for chloroplast product
          Length = 1671

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 94/109 (86%)
 Strand = Plus / Plus

                                                                       
Query: 415 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 474
           |||||||| |||||||||||  |||||||||||||||| ||  || |||| |||||||||
Sbjct: 469 ttctacattgctcctgcttttctggacaagcttgttgttcacatcaccaagaacttcatg 528

                                                            
Query: 475 accctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           ||| |||||||||||||| | || |||||  | ||||||||||||||||
Sbjct: 529 accttgcccaacatcaaggttcctctcattcttggtatctggggaggca 577



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 235 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 293
           ||||||||||| || ||||||||||| || ||||| || |||||||| || ||||||||
Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353

---

>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase
          Length = 1652

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 135/164 (82%)
 Strand = Plus / Plus

                                                                       
Query: 346 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 405
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 391 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 450

                                                                       
Query: 406 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 465
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 451 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 510

                                                       
Query: 466 aacttcatgaccctgcccaacatcaagatcccactcatcttggg 509
           |||||| |||| ||||| ||||||||| | ||||| || |||||
Sbjct: 511 aacttcttgactctgcctaacatcaaggttccacttattttggg 554

---

>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds
          Length = 1832

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 93/108 (86%)
 Strand = Plus / Plus

                                                                       
Query: 416 tctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatga 475
           ||||||| || ||||| || ||||||||||||||||| ||  || |||| |||||| |||
Sbjct: 630 tctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttcttga 689

                                                           
Query: 476 ccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
            | |||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct: 690 acttgcccaacatcaagataccactcatcttgggtgtttggggaggca 737

---

>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase alpha 2 mRNA, complete cds
          Length = 1433

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 107/127 (84%)
 Strand = Plus / Plus

                                                                       
Query: 397 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 456
           ||||||| |||||  || |||||||| |||||||| |||||||||||||||||||| || 
Sbjct: 256 gacaacaacatggatggtttctacattgctcctgcattcatggacaagcttgttgttcac 315

                                                                       
Query: 457 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 516
            || |||| ||||||||| |||| || ||||| ||| | || || ||||||||||| |||
Sbjct: 316 atcaccaagaacttcatgtccctccctaacattaaggttcctctaatcttgggtatttgg 375

                  
Query: 517 ggaggca 523
           |||||||
Sbjct: 376 ggaggca 382

---

>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence
          Length = 1519

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 92/107 (85%)
 Strand = Plus / Plus

                                                                       
Query: 415 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 474
           |||||||||||||||||||||||||||||||||||||| ||  || |||| |||||| | 
Sbjct: 473 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttctta 532

                                                          
Query: 475 accctgcccaacatcaagatcccactcatcttgggtatctggggagg 521
           ||  |||||||||||||| | ||||| || |||||| | ||||||||
Sbjct: 533 acgttgcccaacatcaaggttccacttattttgggtgtttggggagg 579

---

>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
           complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 115/138 (83%)
 Strand = Plus / Plus

                                                                       
Query: 386 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 445
           ||||| |||| ||||||| |||||  || |||||||| || || || |||||||||||||
Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490

                                                                       
Query: 446 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 505
           |||| |||||  || |||| |||||| |||  || || ||||||||||| || || ||||
Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550

                             
Query: 506 tgggtatctggggaggca 523
           ||||||||||||||||||
Sbjct: 551 tgggtatctggggaggca 568

---

>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1724

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 115/138 (83%)
 Strand = Plus / Plus

                                                                       
Query: 386 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 445
           ||||| |||| ||||||| |||||  || |||||||| || || || |||||||||||||
Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490

                                                                       
Query: 446 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 505
           |||| |||||  || |||| |||||| |||  || || ||||||||||| || || ||||
Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550

                             
Query: 506 tgggtatctggggaggca 523
           ||||||||||||||||||
Sbjct: 551 tgggtatctggggaggca 568

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase mRNA
          Length = 1853

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 86/100 (86%)
 Strand = Plus / Plus

                                                                       
Query: 424 gctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgccc 483
           ||||| ||||| ||||||||||||||||| ||  || |||| |||||||||||||| || 
Sbjct: 485 gctcccgcttttatggacaagcttgttgttcacatcaccaagaacttcatgacccttcct 544

                                                   
Query: 484 aacatcaagatcccactcatcttgggtatctggggaggca 523
           ||||| ||| | || |||||||||||||| ||||||||||
Sbjct: 545 aacatgaaggttcctctcatcttgggtatttggggaggca 584



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                       
Query: 258 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggc 317
           |||||||||||| || |||||||| ||||| ||||| |  |||||||| |||||||||||
Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378

---

>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene)
          Length = 678

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 91/107 (85%)
 Strand = Plus / Plus

                                                                       
Query: 417 ctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgac 476
           |||||| ||||||||||| ||||||||||||||||| ||  |||| ||||||||||||| 
Sbjct: 156 ctacattgctcctgcttttatggacaagcttgttgttcacatctcgaaaaacttcatgaa 215

                                                          
Query: 477 cctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           | |||| ||||||||| | || |||||  | ||||| ||||||||||
Sbjct: 216 cttgcctaacatcaaggttcctctcattcttggtatttggggaggca 262

---

>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 2 mRNA, partial cds
          Length = 1462

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 106/127 (83%)
 Strand = Plus / Plus

                                                                       
Query: 397 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 456
           ||||||| |||||  || ||||||||||||||||| |||||||||||||||||||| || 
Sbjct: 257 gacaacaacatggatggtttctacatcgctcctgcattcatggacaagcttgttgttcac 316

                                                                       
Query: 457 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 516
            ||  ||| ||||||||| |||| || ||||| ||| | || || ||| ||||||| |||
Sbjct: 317 atcagcaagaacttcatgtccctccctaacattaaggttcctctaatcctgggtatttgg 376

                  
Query: 517 ggaggca 523
           |||||||
Sbjct: 377 ggaggca 383

---

>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds
          Length = 1627

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 114/138 (82%)
 Strand = Plus / Plus

                                                                       
Query: 386 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 445
           ||||| |||| ||||||| || ||  || |||||||| ||||| |||||  |||||||||
Sbjct: 436 agtacaactttgacaacatcaaggatggtttctacattgctccagcttttttggacaagc 495

                                                                       
Query: 446 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 505
           ||||||| ||  || |||| |||||||||||| |||||||||||||| | || |||||  
Sbjct: 496 ttgttgttcacatcgccaagaacttcatgaccttgcccaacatcaaggttcctctcattc 555

                             
Query: 506 tgggtatctggggaggca 523
           | ||| ||||||||||||
Sbjct: 556 ttggtgtctggggaggca 573

---

>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete
             sequence
          Length = 92624

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                         
Query: 418   tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 477
             ||||| ||||||||||||||||||||||||||||| ||  || |||| |||||| |||| 
Sbjct: 14910 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 14851

                            
Query: 478   ctgcccaacatcaag 492
             ||||| |||||||||
Sbjct: 14850 ctgcctaacatcaag 14836

---

>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase
            activase (rca) gene, complete cds
          Length = 3974

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                        
Query: 418  tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 477
            ||||| ||||||||||||||||||||||||||||| ||  || |||| |||||| |||| 
Sbjct: 2373 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 2432

                           
Query: 478  ctgcccaacatcaag 492
            ||||| |||||||||
Sbjct: 2433 ctgcctaacatcaag 2447

---

>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds
          Length = 1809

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Plus

                                                                       
Query: 414 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 473
           ||||||||| || ||| |||||||||||||| ||||||| ||  || |||| |||| | |
Sbjct: 514 cttctacattgccccttctttcatggacaagattgttgttcacatcaccaagaactactt 573

                                                             
Query: 474 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
           || | |||| ||||||||| | || || ||||||||||| ||||||||||
Sbjct: 574 gaacttgcctaacatcaaggttcccctgatcttgggtatttggggaggca 623

---

>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds
          Length = 1216

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                       
Query: 415 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 474
           |||||||| ||||| |||||||||||||||||||| || ||  || ||||||||||||||
Sbjct: 6   ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 65

             
Query: 475 ac 476
           ||
Sbjct: 66  ac 67

---

>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase
            {alternatively spliced} [spinach, Genomic, 3691 nt]
          Length = 3691

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 67/79 (84%)
 Strand = Plus / Plus

                                                                        
Query: 414  cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 473
            ||||||||| || ||||| || ||||||||||||||||| ||  || |||| |||||| |
Sbjct: 2067 cttctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttctt 2126

                               
Query: 474  gaccctgcccaacatcaag 492
            || | ||||||||||||||
Sbjct: 2127 gaacttgcccaacatcaag 2145



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 491  agatcccactcatcttgggtatctggggaggca 523
            |||| ||||||||||||||| | ||||||||||
Sbjct: 2238 agataccactcatcttgggtgtttggggaggca 2270

---

>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence
          Length = 163160

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                     
Query: 397   gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgt 452
             |||||||||||||  || || ||||| || |||||||| |||||||||||||||||
Sbjct: 84295 gacaacaccatggatggtttttacattgcacctgcttttatggacaagcttgttgt 84240

---

>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 91/112 (81%)
 Strand = Plus / Plus

                                                                        
Query: 412  ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 471
            |||||||||||| ||||||||||| |||| ||| |     ||||| |  |||| ||||||
Sbjct: 1128 ggcttctacatctctcctgctttcctggataagatgaccatccatgttgccaagaacttc 1187

                                                                
Query: 472  atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggca 523
            |||  ||||||||| |||||| | || |||||| ||||||||||||| ||||
Sbjct: 1188 atggacctgcccaagatcaaggttcccctcatcctgggtatctggggtggca 1239

---

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 260     ccgacgaccagcaggacatcacc 282
               |||||||||||||||||||||||
Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066

---

>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase
           activase mRNA, complete cds
          Length = 1693

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                       
Query: 461 ccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggag 520
           |||| |||||||||  ||||||||| |||||| | || |||||  ||||||||||||| |
Sbjct: 406 ccaagaacttcatggacctgcccaagatcaaggtgcccctcattctgggtatctggggtg 465

              
Query: 521 gca 523
           |||
Sbjct: 466 gca 468

---

>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 302     actcgctcttccaggcgcccac 323
               ||||||||||||||||||||||
Sbjct: 2553524 actcgctcttccaggcgcccac 2553503

---

>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 117    gaagaagctcaagaagcaggtg 138
              ||||||||||||||||||||||
Sbjct: 632957 gaagaagctcaagaagcaggtg 632978

---

>emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA
          Length = 929

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  cagcacagagatggctgctgc 65
           |||||||||||||||||||||
Sbjct: 531 cagcacagagatggctgctgc 511

---

>emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA
          Length = 939

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  cagcacagagatggctgctgc 65
           |||||||||||||||||||||
Sbjct: 541 cagcacagagatggctgctgc 521

---

>emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA
          Length = 992

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  cagcacagagatggctgctgc 65
           |||||||||||||||||||||
Sbjct: 595 cagcacagagatggctgctgc 575

---

>emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA
          Length = 1318

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  cagcacagagatggctgctgc 65
           |||||||||||||||||||||
Sbjct: 932 cagcacagagatggctgctgc 912

---

>emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA
          Length = 1006

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  cagcacagagatggctgctgc 65
           |||||||||||||||||||||
Sbjct: 609 cagcacagagatggctgctgc 589

---

>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 192     catggcagcggagaacatcg 211
               ||||||||||||||||||||
Sbjct: 1379894 catggcagcggagaacatcg 1379875

---

>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  tggctgctgccttctcctcc 75
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome
          Length = 10732

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 256  atctccgacgaccagcaggacatc 279
            |||||| |||||||||||||||||
Sbjct: 8676 atctcccacgaccagcaggacatc 8653

---

>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    gcagcggagaacatcgacga 215
              ||||||||||||||||||||
Sbjct: 173412 gcagcggagaacatcgacga 173393

---

>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA
          Length = 1685

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 319  cccacgggcgacggcacccacgag 342
            ||||||||||||| ||||||||||
Sbjct: 1369 cccacgggcgacgtcacccacgag 1392

---

>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor;
            testicular feminization; spinal and bulbar muscular
            atrophy; Kennedy disease) (AR), mRNA
          Length = 3577

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 161  gcaagagctccaaggccaac 180
            ||||||||||||||||||||
Sbjct: 3271 gcaagagctccaaggccaac 3290

---

>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1),
           mRNA
          Length = 2502

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  tggctgctgccttctcctcc 75
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747

---

>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     ctgccttctcctccaccgtc 81
              ||||||||||||||||||||
Sbjct: 240861 ctgccttctcctccaccgtc 240842

---

>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 476     ccctgcccaacatcaagatc 495
               ||||||||||||||||||||
Sbjct: 1130357 ccctgcccaacatcaagatc 1130376

---

>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 192     catggcagcggagaacatcg 211
               ||||||||||||||||||||
Sbjct: 1380755 catggcagcggagaacatcg 1380736

---

>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila)
           (NOTCH1), mRNA
          Length = 9312

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 319 cccacgggcgacggcacccacgag 342
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:1494 IMAGE:3533568), complete cds
          Length = 2464

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  tggctgctgccttctcctcc 75
           ||||||||||||||||||||
Sbjct: 722 tggctgctgccttctcctcc 703

---

>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding
            protein 4 (LOC506402), mRNA
          Length = 7219

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   ctgctgccttctcctccacc 78
            ||||||||||||||||||||
Sbjct: 5008 ctgctgccttctcctccacc 4989

---

>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence
          Length = 457

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 59 ctgctgccttctcctccacc 78
          ||||||||||||||||||||
Sbjct: 65 ctgctgccttctcctccacc 46

---

>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence
          Length = 470

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 59 ctgctgccttctcctccacc 78
          ||||||||||||||||||||
Sbjct: 65 ctgctgccttctcctccacc 46

---

>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1)
            partial mRNA
          Length = 22443

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 117  gaagaagctcaagaagcagg 136
            ||||||||||||||||||||
Sbjct: 8385 gaagaagctcaagaagcagg 8404

---

>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:5049 IMAGE:2900024), complete cds
          Length = 3237

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  tggctgctgccttctcctcc 75
           ||||||||||||||||||||
Sbjct: 232 tggctgctgccttctcctcc 213

---

>gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, complete sequence
          Length = 193170

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 412    ggcttctacatcgctcctgctttc 435
              ||||||| ||||||||||||||||
Sbjct: 147044 ggcttctgcatcgctcctgctttc 147067

---

>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3'
              end of the gene for activator of G-protein signalling 3
              (AGS3), two novel genes, the CARD9 gene for caspase
              recruitment domain family member 9, the SNAPC4 gene for a
              190kDa small nuclear RNA activating complex polypeptide 4, 
              the SDCCAG3 gene for serologically defined colon cancer
              antigen 3, the INPP5E gene for a 72kDa inositol
              polyphosphate-5-phosphatase, the gene for
              phosphatidylinositol polyphosphate 5-phosphatase type IV
              (PPI5PIV), a novel gene (KIAA0310), the 3' end of the
              NOTCH1 gene for Notch homolog 1 translocation-associated
              (Drosophila) and twenty CpG islands, complete sequence
          Length = 188462

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 319    cccacgggcgacggcacccacgag 342
              ||||||||||||| ||||||||||
Sbjct: 166513 cccacgggcgacgtcacccacgag 166490

---

>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the
              gene for  Hermansky-Pudlak syndrome-6 protein (HPS6), two
              pseudogenes for  transcription elongation factor B (SIII),
              polypeptide 1, the LDB1 gene for LIM domain binding 1, a
              novel gene (KIAA0595), the NOLC1 gene for nucleolar and
              coiled-body phosphoprotein 1 and five CpG islands, complete
              sequence
          Length = 158434

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     tggctgctgccttctcctcc 75
              ||||||||||||||||||||
Sbjct: 101054 tggctgctgccttctcctcc 101035

---

>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body
           phosphoprotein 1 mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  tggctgctgccttctcctcc 75
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence
          Length = 147210

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 281   ccagagggaagggcatcgtg 300
             ||||||||||||||||||||
Sbjct: 35948 ccagagggaagggcatcgtg 35967

---

>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1812

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  tggctgctgccttctcctcc 75
           ||||||||||||||||||||
Sbjct: 717 tggctgctgccttctcctcc 698

---

>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar
           to H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2288

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  tggctgctgccttctcctcc 75
           ||||||||||||||||||||
Sbjct: 570 tggctgctgccttctcctcc 551

---

>gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, complete sequence
          Length = 141442

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 451   gtccatctctccaaaaactt 470
             ||||||||||||||||||||
Sbjct: 63248 gtccatctctccaaaaactt 63229

---

>gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-470F15, complete sequence
          Length = 177104

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     acagagatggctgctgcctt 68
              ||||||||||||||||||||
Sbjct: 121162 acagagatggctgctgcctt 121143

---

>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds
          Length = 3577

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 161  gcaagagctccaaggccaac 180
            ||||||||||||||||||||
Sbjct: 3271 gcaagagctccaaggccaac 3290

---

>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence
          Length = 81641

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 281   ccagagggaagggcatcgtg 300
             ||||||||||||||||||||
Sbjct: 47211 ccagagggaagggcatcgtg 47230

---

>gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome 16, complete sequence
          Length = 180261

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                      
Query: 32     aaggtcgaccaagcagcacagagatggctgctgccttctc 71
              |||||| |||||  ||||||| || |||||||||||||||
Sbjct: 111680 aaggtccaccaatgagcacagtgagggctgctgccttctc 111719

---

>gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 of 195 of the
            complete sequence
          Length = 10900

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 476  ccctgcccaacatcaagatc 495
            ||||||||||||||||||||
Sbjct: 7760 ccctgcccaacatcaagatc 7741

---

>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds
          Length = 7693

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 319 cccacgggcgacggcacccacgag 342
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome
             V, complete sequence
          Length = 130299

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 171   caaggccaacaggttcacagtcat 194
             ||||||||||||||||| ||||||
Sbjct: 13824 caaggccaacaggttcagagtcat 13847

---

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 252     cgatatctccgacgaccagc 271
               ||||||||||||||||||||
Sbjct: 4182002 cgatatctccgacgaccagc 4181983

---

>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 476     ccctgcccaacatcaagatc 495
               ||||||||||||||||||||
Sbjct: 1147720 ccctgcccaacatcaagatc 1147739

---

>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and
           coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  tggctgctgccttctcctcc 75
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete
              sequence
          Length = 219072

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 412    ggcttctacatcgctcctgctttc 435
              ||||||| ||||||||||||||||
Sbjct: 141825 ggcttctgcatcgctcctgctttc 141848

---

>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V,
             complete sequence
          Length = 105589

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 171   caaggccaacaggttcacagtcat 194
             ||||||||||||||||| ||||||
Sbjct: 27506 caaggccaacaggttcagagtcat 27483

---

>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence
          Length = 187148

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   aagaagctcaagaagcaggt 137
             ||||||||||||||||||||
Sbjct: 44669 aagaagctcaagaagcaggt 44650

---

>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 209755

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    tggctgctgccttctcctcc 75
             ||||||||||||||||||||
Sbjct: 46900 tggctgctgccttctcctcc 46919

---

>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds
          Length = 3727

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  tggctgctgccttctcctcc 75
           ||||||||||||||||||||
Sbjct: 708 tggctgctgccttctcctcc 689

---

>dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-56O15, complete
              sequences
          Length = 162128

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 32     aaggtcgaccaagcagcacagagatggctgctgccttctc 71
              |||||| |||||  ||||||| || |||||||||||||||
Sbjct: 108212 aaggtccaccaatgagcacagtgagggctgctgccttctc 108173

---

>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain
               2308
          Length = 2121359

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 476     ccctgcccaacatcaagatc 495
               ||||||||||||||||||||
Sbjct: 1144872 ccctgcccaacatcaagatc 1144891

---

>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 52     gagatggctgctgccttctcctcc 75
              ||||||||||||||||||| ||||
Sbjct: 472845 gagatggctgctgccttctgctcc 472822

---

>gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltransferase (cdsA), group 1
            outer membrane protein (omp1), LpxD (lpxD), FabZ (fabZ),
            and LpxA (lpxA) genes, complete cds
          Length = 8895

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 476  ccctgcccaacatcaagatc 495
            ||||||||||||||||||||
Sbjct: 8238 ccctgcccaacatcaagatc 8219

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>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end
          Length = 7332

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 319 cccacgggcgacggcacccacgag 342
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

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>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2502

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  tggctgctgccttctcctcc 75
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,229,566
Number of Sequences: 3902068
Number of extensions: 4229566
Number of successful extensions: 78189
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77684
Number of HSP's gapped (non-prelim): 496
length of query: 523
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 500
effective length of database: 17,143,297,704
effective search space: 8571648852000
effective search space used: 8571648852000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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