ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah62o14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 1039 bits (524), Expect = 0.0 Identities = 547/552 (99%), Gaps = 2/552 (0%) Strand = Plus / Plus Query: 1 gcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatggctg 60 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 90 gcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatggctg 148 Query: 61 ctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaaga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 149 ctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaaga 208 Query: 121 agctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaaca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 209 agctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaaca 268 Query: 181 ggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 269 ggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagg 328 Query: 241 gtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtgg 300 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 329 gtcttgctaccgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtgg 388 Query: 301 actcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 389 actcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacg 448 Query: 361 agtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctaca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 449 agtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctaca 508 Query: 421 tcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 509 tcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgc 568 Query: 481 ccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaat-at 539 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 569 ccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcat 628 Query: 540 tccagtgtgagc 551 |||||||||||| Sbjct: 629 tccagtgtgagc 640
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 942 bits (475), Expect = 0.0 Identities = 527/543 (97%), Gaps = 1/543 (0%) Strand = Plus / Plus Query: 10 cgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatggctgctgccttct 69 ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 18 cgcgcatccaccgctgctagcaaggtcgagcaagcagcacagagatggctgctgccttct 77 Query: 70 cctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaagaagctcaaga 129 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 cctccaccgtcggtgccccggcttctacgccgaccaacttcctcgggaagaagctcaaga 137 Query: 130 agcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcacag 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 138 agcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcacgg 197 Query: 190 tcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgt 249 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 tcatggcagcggaaaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgt 257 Query: 250 acgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctct 309 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 258 acgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactccctct 317 Query: 310 tccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtacgtca 369 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 318 tccaggcgcccactggcgacggcacccacgaggccgtcctcagctcatacgagtacgtca 377 Query: 370 gccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcgctcctg 429 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 gccagggactcaagaagtacgacttcgacaacaccatgggaggcttctacatcgctcctg 437 Query: 430 ctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatca 489 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 438 ctttcatggacaagcttgttgtccatctctccaagaacttcatgaccctgcccaacatca 497 Query: 490 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaat-attccagtgtg 548 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 498 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatccttccagtgtg 557 Query: 549 agc 551 ||| Sbjct: 558 agc 560
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 783 bits (395), Expect = 0.0 Identities = 401/403 (99%) Strand = Plus / Plus Query: 89 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577 Query: 149 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5578 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 5637 Query: 209 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5638 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 5697 Query: 269 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacgggcga 328 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 5698 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggggca 5757 Query: 329 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5758 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 5817 Query: 389 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5818 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 5877 Query: 449 tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 491 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5878 tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 5920 Score = 305 bits (154), Expect = 8e-80 Identities = 259/294 (88%) Strand = Plus / Plus Query: 233 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998 Query: 293 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 352 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058 Query: 353 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 412 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 3059 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 3118 Query: 413 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 472 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 3119 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 3178 Query: 473 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 526 ||| || |||||||||||| | || |||||| |||||||||||||||||||||| Sbjct: 3179 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaaggg 3232 Score = 163 bits (82), Expect = 7e-37 Identities = 89/90 (98%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 1 gcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatggctg 60 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 5310 gcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatggctg 5368 Query: 61 ctgccttctcctccaccgtcggggctccgg 90 |||||||||||||||||||||||||||||| Sbjct: 5369 ctgccttctcctccaccgtcggggctccgg 5398 Score = 109 bits (55), Expect = 1e-20 Identities = 62/63 (98%), Gaps = 1/63 (1%) Strand = Plus / Plus Query: 490 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaat-attccagtgtg 548 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 6070 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 6129 Query: 549 agc 551 ||| Sbjct: 6130 agc 6132
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 724 bits (365), Expect = 0.0 Identities = 381/385 (98%), Gaps = 1/385 (0%) Strand = Plus / Plus Query: 168 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 60 Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 61 gacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagaggg 120 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 180 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 240 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 300 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 360 Query: 528 caaggaaaat-attccagtgtgagc 551 |||||||||| |||||||||||||| Sbjct: 361 caaggaaaatcattccagtgtgagc 385
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 446 bits (225), Expect = e-122 Identities = 301/325 (92%), Gaps = 1/325 (0%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| ||||| ||||| || ||||||||||||| |||||| |||||||||||||||||| Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 377 ctcagctcctacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 436 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct: 437 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 496 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 497 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaagggt 556 Query: 528 caaggaaaat-attccagtgtgagc 551 || || |||| ||||||||||||| Sbjct: 557 caggggaaatccttccagtgtgagc 581 Score = 228 bits (115), Expect = 2e-56 Identities = 139/147 (94%) Strand = Plus / Plus Query: 50 agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 109 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| Sbjct: 76 agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagctt 135 Query: 110 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 169 |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 136 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 195 Query: 170 caaggccaacaggttcacagtcatggc 196 |||||||||||||||||| |||||||| Sbjct: 196 caaggccaacaggttcaccgtcatggc 222
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 426 bits (215), Expect = e-116 Identities = 298/325 (91%), Gaps = 1/325 (0%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| ||||| ||||| | ||||||||||||| |||||| || ||||||||||||||| Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 367 ctcagctcntacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 426 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct: 427 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 486 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 487 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaagggt 546 Query: 528 caaggaaaat-attccagtgtgagc 551 || || |||| ||||||||||||| Sbjct: 547 caggggaaatccttccagtgtgagc 571 Score = 222 bits (112), Expect = 9e-55 Identities = 138/147 (93%) Strand = Plus / Plus Query: 50 agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 109 ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||| Sbjct: 66 agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagctt 125 Query: 110 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 169 |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 126 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 185 Query: 170 caaggccaacaggttcacagtcatggc 196 |||||||||||||||||| |||||||| Sbjct: 186 caaggccaacaggttcaccgtcatggc 212
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 383 bits (193), Expect = e-103 Identities = 293/325 (90%), Gaps = 1/325 (0%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 324 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 383 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 384 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 443 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 444 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 503 Query: 528 caaggaaaat-attccagtgtgagc 551 || ||||||| ||||||||||||| Sbjct: 504 cagggaaaatccttccagtgtgagc 528 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 52 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 25 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 84 Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 85 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 144 Query: 172 aggccaacaggttca 186 | ||||||||||| Sbjct: 145 acatcaacaggttca 159
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 383 bits (193), Expect = e-103 Identities = 293/325 (90%), Gaps = 1/325 (0%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 361 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 420 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 421 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 480 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 481 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 540 Query: 528 caaggaaaat-attccagtgtgagc 551 || ||||||| ||||||||||||| Sbjct: 541 cagggaaaatccttccagtgtgagc 565 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 52 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 62 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 121 Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 122 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 181 Query: 172 aggccaacaggttca 186 | ||||||||||| Sbjct: 182 acatcaacaggttca 196
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 383 bits (193), Expect = e-103 Identities = 293/325 (90%), Gaps = 1/325 (0%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 360 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 419 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 420 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 479 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 480 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 539 Query: 528 caaggaaaat-attccagtgtgagc 551 || ||||||| ||||||||||||| Sbjct: 540 cagggaaaatccttccagtgtgagc 564 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 52 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 61 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120 Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180 Query: 172 aggccaacaggttca 186 | ||||||||||| Sbjct: 181 acatcaacaggttca 195
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 383 bits (193), Expect = e-103 Identities = 293/325 (90%), Gaps = 1/325 (0%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 24 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 84 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 144 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 203 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 204 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 263 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 264 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 323 Query: 528 caaggaaaat-attccagtgtgagc 551 || ||||||| ||||||||||||| Sbjct: 324 cagggaaaatccttccagtgtgagc 348
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 383 bits (193), Expect = e-103 Identities = 293/325 (90%), Gaps = 1/325 (0%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 365 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 424 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 425 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 484 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 485 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 544 Query: 528 caaggaaaat-attccagtgtgagc 551 || ||||||| ||||||||||||| Sbjct: 545 cagggaaaatccttccagtgtgagc 569 Score = 165 bits (83), Expect = 2e-37 Identities = 122/135 (90%) Strand = Plus / Plus Query: 52 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 66 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 125 Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171 | ||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 126 tggggaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaagagctcca 185 Query: 172 aggccaacaggttca 186 | ||||||||||| Sbjct: 186 acatcaacaggttca 200
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 383 bits (193), Expect = e-103 Identities = 293/325 (90%), Gaps = 1/325 (0%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 359 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 418 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 419 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 478 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 479 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 538 Query: 528 caaggaaaat-attccagtgtgagc 551 || ||||||| ||||||||||||| Sbjct: 539 cagggaaaatccttccagtgtgagc 563 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 52 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 60 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 119 Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 120 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 179 Query: 172 aggccaacaggttca 186 | ||||||||||| Sbjct: 180 acatcaacaggttca 194
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 375 bits (189), Expect = e-100 Identities = 292/325 (89%), Gaps = 1/325 (0%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 332 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 391 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 ||||||||||||||||| ||| |||||||||||||||| || ||||| ||||||| ||| Sbjct: 392 ggaggcttctacatcgccccttctttcatggacaagctcgtcgtccacatctccaagaac 451 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 452 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 511 Query: 528 caaggaaaat-attccagtgtgagc 551 || ||||||| ||||||||||||| Sbjct: 512 cagggaaaatccttccagtgtgagc 536 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 52 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 33 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 92 Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 93 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 152 Query: 172 aggccaacaggttca 186 | ||||||||||| Sbjct: 153 acatcaacaggttca 167
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 375 bits (189), Expect = e-100 Identities = 292/325 (89%), Gaps = 1/325 (0%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 372 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 431 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 432 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 491 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 ||||||||||| |||||||||||| ||||||||| | ||||||||||||||||||||||| Sbjct: 492 ttcatgaccctccccaacatcaaggtcccactcaccctgggtatctggggaggcaagggt 551 Query: 528 caaggaaaat-attccagtgtgagc 551 || ||||||| ||||||||||||| Sbjct: 552 cagggaaaatccttccagtgtgagc 576 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 52 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 73 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 132 Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 133 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 192 Query: 172 aggccaacaggttca 186 | ||||||||||| Sbjct: 193 acatcaacaggttca 207
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 313 bits (158), Expect = 3e-82 Identities = 260/294 (88%) Strand = Plus / Plus Query: 233 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292 |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| || Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276 Query: 293 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 352 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336 Query: 353 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 412 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 337 ctcctacgagtacatcagccagggcctgcgcaagtacgacttcgacaacaccatggacgg 396 Query: 413 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 472 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 397 gctgtacatcgccccggcgttcatggacaagctcatcgtccacctcgccaagaacttcat 456 Query: 473 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 526 ||| || |||||||||||| |||| |||||| |||||||||||||||||||||| Sbjct: 457 gacactccccaacatcaaggtccctctcatcctgggtatctggggaggcaaggg 510 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 53 gatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcct 112 ||||||| |||| ||||| |||||||| || |||||||| || || ||||||| |||||| Sbjct: 25 gatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcct 84 Query: 113 cgggaagaagctcaagaagcagg 135 |||||||||| | |||||||||| Sbjct: 85 cgggaagaaggtgaagaagcagg 107
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 305 bits (154), Expect = 8e-80 Identities = 259/294 (88%) Strand = Plus / Plus Query: 233 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429 Query: 293 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 352 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489 Query: 353 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 412 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 490 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 549 Query: 413 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 472 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 550 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 609 Query: 473 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 526 ||| || |||||||||||| | || |||||| |||||||||||||||||||||| Sbjct: 610 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaaggg 663
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 248 bits (125), Expect = 2e-62 Identities = 183/201 (91%), Gaps = 1/201 (0%) Strand = Plus / Plus Query: 352 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 411 |||||||||||||| |||||||||| || | | |||||||||||||||||||||||||| Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386 Query: 412 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttca 471 ||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||||||| Sbjct: 387 gcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttca 446 Query: 472 tgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaag 531 ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| | Sbjct: 447 tgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggtcagg 506 Query: 532 gaaaat-attccagtgtgagc 551 |||||| ||||||||||||| Sbjct: 507 gaaaatccttccagtgtgagc 527 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 52 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 61 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120 Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180 Query: 172 aggccaacaggttca 186 | ||||||||||| Sbjct: 181 acatcaacaggttca 195 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 288 aagggcatcgtggactcgctcttccaggc 316 ||||| |||| ||||| || |||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 228 bits (115), Expect = 2e-56 Identities = 155/167 (92%), Gaps = 1/167 (0%) Strand = Plus / Minus Query: 386 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 445 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 109376 Query: 446 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 505 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 109375 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 109316 Query: 506 gggtatctggggaggcaagggtcaaggaaaat-attccagtgtgagc 551 |||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct: 109315 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagc 109269 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587 Query: 348 ctcagctcctacgagtacgtcagccaggg 376 |||||||||||||||||| |||||||||| Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 233 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146 Query: 293 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 343 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 99 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 158 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779 Query: 159 ggcaagagctccaaggccaacaggttca 186 |||||||||||||| ||||||||||| Sbjct: 109778 ggcaagagctccaacatcaacaggttca 109751 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 52 agatggctgctgccttctcctccaccgtcggggctccgg 90 |||||||||||||||||||||||||||| || ||||||| Sbjct: 109984 agatggctgctgccttctcctccaccgttggagctccgg 109946
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 228 bits (115), Expect = 2e-56 Identities = 155/167 (92%), Gaps = 1/167 (0%) Strand = Plus / Minus Query: 386 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 445 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 31253 Query: 446 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 505 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 31252 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 31193 Query: 506 gggtatctggggaggcaagggtcaaggaaaat-attccagtgtgagc 551 |||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct: 31192 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagc 31146 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464 Query: 348 ctcagctcctacgagtacgtcagccaggg 376 |||||||||||||||||| |||||||||| Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 233 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023 Query: 293 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 343 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 99 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 158 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656 Query: 159 ggcaagagctccaaggccaacaggttca 186 |||||||||||||| ||||||||||| Sbjct: 31655 ggcaagagctccaacatcaacaggttca 31628 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 52 agatggctgctgccttctcctccaccgtcggggctccgg 90 |||||||||||||||||||||||||||| || ||||||| Sbjct: 31861 agatggctgctgccttctcctccaccgttggagctccgg 31823
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 228 bits (115), Expect = 2e-56 Identities = 155/167 (92%), Gaps = 1/167 (0%) Strand = Plus / Minus Query: 386 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 445 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28304515 Query: 446 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 505 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 28304514 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28304455 Query: 506 gggtatctggggaggcaagggtcaaggaaaat-attccagtgtgagc 551 |||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct: 28304454 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagc 28304408 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726 Query: 348 ctcagctcctacgagtacgtcagccaggg 376 |||||||||||||||||| |||||||||| Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 233 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285 Query: 293 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 343 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 99 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 158 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918 Query: 159 ggcaagagctccaaggccaacaggttca 186 |||||||||||||| ||||||||||| Sbjct: 28304917 ggcaagagctccaacatcaacaggttca 28304890 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 52 agatggctgctgccttctcctccaccgtcggggctccgg 90 |||||||||||||||||||||||||||| || ||||||| Sbjct: 28305123 agatggctgctgccttctcctccaccgttggagctccgg 28305085
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 228 bits (115), Expect = 2e-56 Identities = 155/167 (92%), Gaps = 1/167 (0%) Strand = Plus / Minus Query: 386 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 445 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28286964 Query: 446 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 505 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 28286963 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28286904 Query: 506 gggtatctggggaggcaagggtcaaggaaaat-attccagtgtgagc 551 |||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct: 28286903 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagc 28286857 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175 Query: 348 ctcagctcctacgagtacgtcagccaggg 376 |||||||||||||||||| |||||||||| Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 233 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734 Query: 293 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 343 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 99 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 158 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367 Query: 159 ggcaagagctccaaggccaacaggttca 186 |||||||||||||| ||||||||||| Sbjct: 28287366 ggcaagagctccaacatcaacaggttca 28287339 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 52 agatggctgctgccttctcctccaccgtcggggctccgg 90 |||||||||||||||||||||||||||| || ||||||| Sbjct: 28287572 agatggctgctgccttctcctccaccgttggagctccgg 28287534
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 202 bits (102), Expect = 9e-49 Identities = 258/310 (83%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 |||||| |||| ||| |||||||||||||| | ||| ||||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||| ||| |||||||||||| | ||| |||||||||||| ||| Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 | ||||||||||| || | |||||||||||||| || ||||| |||||||| ||| Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 |||||||||||||| ||||||||| | || |||||| ||||||||||||||||||| || Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatctggggaggcaaaggc 512 Query: 528 caaggaaaat 537 || ||||||| Sbjct: 513 cagggaaaat 522 Score = 91.7 bits (46), Expect = 2e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 54 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 107 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 108 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 164 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 165 agctcca 171 ||||||| Sbjct: 141 agctcca 147
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 186 bits (94), Expect = 5e-44 Identities = 229/274 (83%) Strand = Plus / Plus Query: 264 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 323 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294 Query: 324 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 383 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 354 Query: 384 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 443 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 355 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 414 Query: 444 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 503 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 415 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 474 Query: 504 ttgggtatctggggaggcaagggtcaaggaaaat 537 |||||||||||||||||||| |||||||| |||| Sbjct: 475 ttgggtatctggggaggcaaaggtcaagggaaat 508
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 186 bits (94), Expect = 5e-44 Identities = 229/274 (83%) Strand = Plus / Plus Query: 264 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 323 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 98 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157 Query: 324 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 383 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 217 Query: 384 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 443 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 218 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 277 Query: 444 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 503 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 278 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 337 Query: 504 ttgggtatctggggaggcaagggtcaaggaaaat 537 |||||||||||||||||||| |||||||| |||| Sbjct: 338 ttgggtatctggggaggcaaaggtcaagggaaat 371
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 178 bits (90), Expect = 1e-41 Identities = 222/266 (83%) Strand = Plus / Plus Query: 264 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 323 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187 Query: 324 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 383 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 247 Query: 384 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 443 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 248 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 307 Query: 444 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 503 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 308 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 367 Query: 504 ttgggtatctggggaggcaagggtca 529 |||||||||||||||||||| ||||| Sbjct: 368 ttgggtatctggggaggcaaaggtca 393
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 165 bits (83), Expect = 2e-37 Identities = 252/310 (81%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 |||||| |||| ||| |||||||||||||| | |||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||| ||| |||||||||||| | ||| |||||||||||| ||| Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 | ||||||||||| || | |||||||||||||| || ||||| |||||||| ||| Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 |||||||||||||| ||||||||| | || |||||| |||||||| ||||||||| || Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatcgtgggaggcaaaggc 512 Query: 528 caaggaaaat 537 || ||||||| Sbjct: 513 cagggaaaat 522 Score = 91.7 bits (46), Expect = 2e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 54 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 107 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 108 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 164 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 165 agctcca 171 ||||||| Sbjct: 141 agctcca 147
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 153 bits (77), Expect = 7e-34 Identities = 168/197 (85%), Gaps = 1/197 (0%) Strand = Plus / Plus Query: 354 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 413 |||||||| ||||||||||| || || || ||||| |||| ||||||| ||| || Sbjct: 396 tcctacgaatacgtcagccaaggtcttcgccagtacaacttggacaacaagttggacgga 455 Query: 414 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 473 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| || Sbjct: 456 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttg 515 Query: 474 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 533 | |||||||||||||| | ||||| ||||||||||||||||||||||| |||||||| Sbjct: 516 aaattgcccaacatcaaggttccacttatcttgggtatctggggaggcaaaggtcaaggc 575 Query: 534 aaat-attccagtgtga 549 |||| |||||||||||| Sbjct: 576 aaatcattccagtgtga 592
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 151 bits (76), Expect = 3e-33 Identities = 247/304 (81%) Strand = Plus / Plus Query: 234 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggc 293 |||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| || Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaaaggt 339 Query: 294 atcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 353 || || ||||| | ||||| || |||| | ||| || || ||| | || ||| | ||| Sbjct: 340 atggtcgactcattgttccaagctcccatgaacgatggtactcactatgctgtcatgagc 399 Query: 354 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 413 ||||| |||||| | ||||| ||||| || | |||||||| ||||||| ||||| || Sbjct: 400 tcctatgagtacattagccaaggccttcgcacatacgacttggacaacaacatggatgga 459 Query: 414 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 473 |||||||| || || ||||||||||||||||||||||| || || |||| |||| |||| Sbjct: 460 ttctacattgccccagctttcatggacaagcttgttgttcacatcaccaagaactacatg 519 Query: 474 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 533 ||||| || ||||| ||| | || || ||||||||||| ||||||||||| ||||||||| Sbjct: 520 acccttcctaacattaaggttcctcttatcttgggtatttggggaggcaaaggtcaagga 579 Query: 534 aaat 537 |||| Sbjct: 580 aaat 583
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 135 bits (68), Expect = 2e-28 Identities = 174/208 (83%), Gaps = 1/208 (0%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 524 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675 Query: 525 ggtcaaggaaaat-attccagtgtgagc 551 |||||||| |||| ||||||||||||| Sbjct: 676 ggtcaaggtaaatccttccagtgtgagc 703
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 135 bits (68), Expect = 2e-28 Identities = 174/208 (83%), Gaps = 1/208 (0%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 524 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675 Query: 525 ggtcaaggaaaat-attccagtgtgagc 551 |||||||| |||| ||||||||||||| Sbjct: 676 ggtcaaggtaaatccttccagtgtgagc 703
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 135 bits (68), Expect = 2e-28 Identities = 174/208 (83%), Gaps = 1/208 (0%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 524 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704 Query: 525 ggtcaaggaaaat-attccagtgtgagc 551 |||||||| |||| ||||||||||||| Sbjct: 705 ggtcaaggtaaatccttccagtgtgagc 732
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 135 bits (68), Expect = 2e-28 Identities = 174/208 (83%), Gaps = 1/208 (0%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 524 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586 Query: 525 ggtcaaggaaaat-attccagtgtgagc 551 |||||||| |||| ||||||||||||| Sbjct: 587 ggtcaaggtaaatccttccagtgtgagc 614
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 135 bits (68), Expect = 2e-28 Identities = 174/208 (83%), Gaps = 1/208 (0%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 322 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 381 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 382 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 441 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 524 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 442 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 501 Query: 525 ggtcaaggaaaat-attccagtgtgagc 551 |||||||| |||| ||||||||||||| Sbjct: 502 ggtcaaggtaaatccttccagtgtgagc 529
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 135 bits (68), Expect = 2e-28 Identities = 174/208 (83%), Gaps = 1/208 (0%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 524 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589 Query: 525 ggtcaaggaaaat-attccagtgtgagc 551 |||||||| |||| ||||||||||||| Sbjct: 590 ggtcaaggtaaatccttccagtgtgagc 617
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 135 bits (68), Expect = 2e-28 Identities = 174/208 (83%), Gaps = 1/208 (0%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 399 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 458 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 459 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 518 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 524 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 519 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 578 Query: 525 ggtcaaggaaaat-attccagtgtgagc 551 |||||||| |||| ||||||||||||| Sbjct: 579 ggtcaaggtaaatccttccagtgtgagc 606
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 135 bits (68), Expect = 2e-28 Identities = 174/208 (83%), Gaps = 1/208 (0%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 524 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586 Query: 525 ggtcaaggaaaat-attccagtgtgagc 551 |||||||| |||| ||||||||||||| Sbjct: 587 ggtcaaggtaaatccttccagtgtgagc 614
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 135 bits (68), Expect = 2e-28 Identities = 174/208 (83%), Gaps = 1/208 (0%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 524 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589 Query: 525 ggtcaaggaaaat-attccagtgtgagc 551 |||||||| |||| ||||||||||||| Sbjct: 590 ggtcaaggtaaatccttccagtgtgagc 617
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 135 bits (68), Expect = 2e-28 Identities = 174/208 (83%), Gaps = 1/208 (0%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 524 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704 Query: 525 ggtcaaggaaaat-attccagtgtgagc 551 |||||||| |||| ||||||||||||| Sbjct: 705 ggtcaaggtaaatccttccagtgtgagc 732
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 125 bits (63), Expect = 2e-25 Identities = 121/139 (87%), Gaps = 1/139 (0%) Strand = Plus / Plus Query: 414 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 473 ||||||||||||||| |||||||||||||||||||||| || || |||| |||||| || Sbjct: 426 ttctacatcgctccttctttcatggacaagcttgttgttcacatcaccaagaacttcttg 485 Query: 474 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 533 | |||||||||||||| | |||||||| |||||| ||||||||||||| |||||||| Sbjct: 486 aaattgcccaacatcaaggttccactcattttgggtgtctggggaggcaaaggtcaaggt 545 Query: 534 aaat-attccagtgtgagc 551 |||| ||||||||||||| Sbjct: 546 aaatctttccagtgtgagc 564
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 123 bits (62), Expect = 6e-25 Identities = 123/142 (86%), Gaps = 1/142 (0%) Strand = Plus / Plus Query: 411 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 470 ||||||||||| || ||||||||||||||||| |||||||| || || |||| |||||| Sbjct: 434 ggcttctacattgcccctgctttcatggacaaacttgttgttcacatcaccaagaacttc 493 Query: 471 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 530 |||| |||||||||||||| | ||||||||||||||| | ||||||||||| |||||| Sbjct: 494 ttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaa 553 Query: 531 ggaaaat-attccagtgtgagc 551 || |||| |||||| ||||||| Sbjct: 554 ggtaaatcattccaatgtgagc 575
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 117 bits (59), Expect = 4e-23 Identities = 120/139 (86%), Gaps = 1/139 (0%) Strand = Plus / Plus Query: 414 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 473 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 476 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 535 Query: 474 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 533 || || |||||||| ||| | || ||||| ||||||||||||||||| || |||||||| Sbjct: 536 actctccccaacataaaggttcctctcattttgggtatctggggaggtaaaggtcaaggt 595 Query: 534 aaat-attccagtgtgagc 551 |||| ||||||||||||| Sbjct: 596 aaatctttccagtgtgagc 614
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 117 bits (59), Expect = 4e-23 Identities = 107/123 (86%) Strand = Plus / Plus Query: 415 tctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatga 474 ||||||| || ||||| || ||||||||||||||||| || || |||| |||||| ||| Sbjct: 630 tctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttcttga 689 Query: 475 ccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaa 534 | |||||||||||||||| ||||||||||||||| | |||||||||||||||||||| | Sbjct: 690 acttgcccaacatcaagataccactcatcttgggtgtttggggaggcaagggtcaaggta 749 Query: 535 aat 537 ||| Sbjct: 750 aat 752
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 115 bits (58), Expect = 2e-22 Identities = 121/142 (85%) Strand = Plus / Plus Query: 396 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 455 ||||||| ||||| || |||||||| |||||||| |||||||||||||||||||| || Sbjct: 256 gacaacaacatggatggtttctacattgctcctgcattcatggacaagcttgttgttcac 315 Query: 456 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 515 || |||| ||||||||| |||| || ||||| ||| | || || ||||||||||| ||| Sbjct: 316 atcaccaagaacttcatgtccctccctaacattaaggttcctctaatcttgggtatttgg 375 Query: 516 ggaggcaagggtcaaggaaaat 537 |||||||| ||||||||||||| Sbjct: 376 ggaggcaaaggtcaaggaaaat 397
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 115 bits (58), Expect = 2e-22 Identities = 94/106 (88%) Strand = Plus / Plus Query: 432 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 491 |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 22 ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 81 Query: 492 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaat 537 | || |||||| ||||||||||||||||||| || || ||||||| Sbjct: 82 gttcccctcatcctgggtatctggggaggcaaaggccagggaaaat 127
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 115 bits (58), Expect = 2e-22 Identities = 106/122 (86%) Strand = Plus / Plus Query: 414 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 473 |||||||| ||||||||||| |||||||||||||||| || || |||| ||||||||| Sbjct: 469 ttctacattgctcctgcttttctggacaagcttgttgttcacatcaccaagaacttcatg 528 Query: 474 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 533 ||| |||||||||||||| | || ||||| | |||||||||||||||||||| |||||| Sbjct: 529 accttgcccaacatcaaggttcctctcattcttggtatctggggaggcaagggacaagga 588 Query: 534 aa 535 || Sbjct: 589 aa 590 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 234 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292 ||||||||||| || ||||||||||| || ||||| || |||||||| || |||||||| Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 113 bits (57), Expect = 6e-22 Identities = 129/153 (84%) Strand = Plus / Plus Query: 385 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 444 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 445 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 504 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || |||| Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 505 tgggtatctggggaggcaagggtcaaggaaaat 537 ||||||||||||||||||| ||||||||||||| Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaat 583
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 113 bits (57), Expect = 6e-22 Identities = 129/153 (84%) Strand = Plus / Plus Query: 385 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 444 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 445 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 504 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || |||| Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 505 tgggtatctggggaggcaagggtcaaggaaaat 537 ||||||||||||||||||| ||||||||||||| Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaat 583
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 113 bits (57), Expect = 6e-22 Identities = 99/113 (87%) Strand = Plus / Plus Query: 417 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 476 ||||||||||| || ||||||||||||||||| || || || |||| |||||||||| | Sbjct: 87 tacatcgctccggccttcatggacaagcttgtcgttcacatcaccaagaacttcatgaac 146 Query: 477 ctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtca 529 |||||||||||||||| || ||||| |||||||||||||||||||| ||||| Sbjct: 147 ttgcccaacatcaagattcctctcattttgggtatctggggaggcaaaggtca 199
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 111 bits (56), Expect = 2e-21 Identities = 104/120 (86%) Strand = Plus / Plus Query: 416 ctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgac 475 |||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||||| Sbjct: 156 ctacattgctcctgcttttatggacaagcttgttgttcacatctcgaaaaacttcatgaa 215 Query: 476 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaa 535 | |||| ||||||||| | || ||||| | ||||| ||||||||||||||||||||||| Sbjct: 216 cttgcctaacatcaaggttcctctcattcttggtatttggggaggcaagggtcaaggaaa 275
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 109 bits (55), Expect = 1e-20 Identities = 119/139 (85%), Gaps = 1/139 (0%) Strand = Plus / Plus Query: 414 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 473 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| | Sbjct: 473 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttctta 532 Query: 474 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 533 || |||||||||||||| | ||||| || |||||| | |||||||| || |||||||| Sbjct: 533 acgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggt 592 Query: 534 aaat-attccagtgtgagc 551 |||| |||||| ||||||| Sbjct: 593 aaatcattccaatgtgagc 611
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 107 bits (54), Expect = 4e-20 Identities = 120/142 (84%) Strand = Plus / Plus Query: 396 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 455 ||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| || Sbjct: 257 gacaacaacatggatggtttctacatcgctcctgcattcatggacaagcttgttgttcac 316 Query: 456 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 515 || ||| ||||||||| |||| || ||||| ||| | || || ||| ||||||| ||| Sbjct: 317 atcagcaagaacttcatgtccctccctaacattaaggttcctctaatcctgggtatttgg 376 Query: 516 ggaggcaagggtcaaggaaaat 537 |||||||| ||||||||||||| Sbjct: 377 ggaggcaaaggtcaaggaaaat 398
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 105 bits (53), Expect = 2e-19 Identities = 173/209 (82%), Gaps = 3/209 (1%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 391 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 450 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 451 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 510 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttggg-tatctggggaggcaa 523 |||||| |||| ||||| ||||||||| | ||||| || ||||| | || |||||||||| Sbjct: 511 aacttcttgactctgcctaacatcaaggttccacttattttgggctctc-ggggaggcaa 569 Query: 524 gggtcaaggaaaat-attccagtgtgagc 551 |||||||| |||| ||||||||||||| Sbjct: 570 aggtcaaggtaaatccttccagtgtgagc 598
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 105 bits (53), Expect = 2e-19 Identities = 128/153 (83%) Strand = Plus / Plus Query: 385 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 444 ||||| |||| ||||||| || || || |||||||| ||||| ||||| ||||||||| Sbjct: 436 agtacaactttgacaacatcaaggatggtttctacattgctccagcttttttggacaagc 495 Query: 445 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 504 ||||||| || || |||| |||||||||||| |||||||||||||| | || ||||| Sbjct: 496 ttgttgttcacatcgccaagaacttcatgaccttgcccaacatcaaggttcctctcattc 555 Query: 505 tgggtatctggggaggcaagggtcaaggaaaat 537 | ||| |||||||||||||||| |||||||||| Sbjct: 556 ttggtgtctggggaggcaagggacaaggaaaat 588
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 93.7 bits (47), Expect = 6e-16 Identities = 92/107 (85%) Strand = Plus / Plus Query: 423 gctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgccc 482 ||||| ||||| ||||||||||||||||| || || |||| |||||||||||||| || Sbjct: 485 gctcccgcttttatggacaagcttgttgttcacatcaccaagaacttcatgacccttcct 544 Query: 483 aacatcaagatcccactcatcttgggtatctggggaggcaagggtca 529 ||||| ||| | || |||||||||||||| ||||||||||| ||||| Sbjct: 545 aacatgaaggttcctctcatcttgggtatttggggaggcaaaggtca 591 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 257 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggc 316 |||||||||||| || |||||||| ||||| ||||| | |||||||| ||||||||||| Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 81.8 bits (41), Expect = 2e-12 Identities = 104/125 (83%) Strand = Plus / Plus Query: 413 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 472 ||||||||| || ||| |||||||||||||| ||||||| || || |||| |||| | | Sbjct: 514 cttctacattgccccttctttcatggacaagattgttgttcacatcaccaagaactactt 573 Query: 473 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 532 || | |||| ||||||||| | || || ||||||||||| ||||||||||| |||||||| Sbjct: 574 gaacttgcctaacatcaaggttcccctgatcttgggtatttggggaggcaaaggtcaagg 633 Query: 533 aaaat 537 |||| Sbjct: 634 taaat 638
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 417 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 476 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 14910 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 14851 Query: 477 ctgcccaacatcaag 491 ||||| ||||||||| Sbjct: 14850 ctgcctaacatcaag 14836 Score = 52.0 bits (26), Expect = 0.002 Identities = 51/58 (87%), Gaps = 1/58 (1%) Strand = Plus / Minus Query: 495 ccactcatcttgggtatctggggaggcaagggtcaaggaaaat-attccagtgtgagc 551 ||||| || |||||||| ||||||||||| |||||||| |||| ||||||||||||| Sbjct: 14733 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagc 14676
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 417 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 476 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 2373 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 2432 Query: 477 ctgcccaacatcaag 491 ||||| ||||||||| Sbjct: 2433 ctgcctaacatcaag 2447 Score = 52.0 bits (26), Expect = 0.002 Identities = 51/58 (87%), Gaps = 1/58 (1%) Strand = Plus / Plus Query: 495 ccactcatcttgggtatctggggaggcaagggtcaaggaaaat-attccagtgtgagc 551 ||||| || |||||||| ||||||||||| |||||||| |||| ||||||||||||| Sbjct: 2550 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagc 2607
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 414 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 473 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 6 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 65 Query: 474 ac 475 || Sbjct: 66 ac 67 Score = 54.0 bits (27), Expect = 5e-04 Identities = 49/55 (89%), Gaps = 1/55 (1%) Strand = Plus / Plus Query: 498 ctcatcttgggtatctggggaggcaagggtcaaggaaaat-attccagtgtgagc 551 ||||| ||||||||||||||||| || |||||||| |||| ||||||||||||| Sbjct: 186 ctcattttgggtatctggggaggtaaaggtcaaggtaaatctttccagtgtgagc 240
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 65.9 bits (33), Expect = 1e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 411 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 470 |||||||||||| ||||||||||| |||| ||| | ||||| | |||| |||||| Sbjct: 1128 ggcttctacatctctcctgctttcctggataagatgaccatccatgttgccaagaacttc 1187 Query: 471 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 530 ||| ||||||||| |||||| | || |||||| ||||||||||||| |||||||| || Sbjct: 1188 atggacctgcccaagatcaaggttcccctcatcctgggtatctggggtggcaagggccag 1247 Query: 531 ggaaa 535 ||||| Sbjct: 1248 ggaaa 1252
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 490 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaat 537 |||| ||||||||||||||| | |||||||||||||||||||| |||| Sbjct: 2238 agataccactcatcttgggtgtttggggaggcaagggtcaaggtaaat 2285 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 413 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 472 ||||||||| || ||||| || ||||||||||||||||| || || |||| |||||| | Sbjct: 2067 cttctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttctt 2126 Query: 473 gaccctgcccaacatcaag 491 || | |||||||||||||| Sbjct: 2127 gaacttgcccaacatcaag 2145
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 396 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgt 451 ||||||||||||| || || ||||| || |||||||| ||||||||||||||||| Sbjct: 84295 gacaacaccatggatggtttttacattgcacctgcttttatggacaagcttgttgt 84240 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 507 ggtatctggggaggcaagggtcaaggaaaat 537 |||||||||||||| || ||||||||||||| Sbjct: 83958 ggtatctggggaggtaaaggtcaaggaaaat 83928
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 54.0 bits (27), Expect = 5e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 460 ccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggag 519 |||| ||||||||| ||||||||| |||||| | || ||||| ||||||||||||| | Sbjct: 406 ccaagaacttcatggacctgcccaagatcaaggtgcccctcattctgggtatctggggtg 465 Query: 520 gcaaggg 526 ||||||| Sbjct: 466 gcaaggg 472
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Plus Query: 476 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 526 ||||||||| |||||| | || ||||| ||||||||||||| |||||||| Sbjct: 1634 cctgcccaagatcaaggtgcccctcattctgggtatctggggtggcaaggg 1684
>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence Length = 105218 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 507 ggtatctggggaggcaagggtcaaggaaaat 537 |||||||||||||| || ||||||||||||| Sbjct: 104933 ggtatctggggaggtaaaggtcaaggaaaat 104903
>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence Length = 108028 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 489 aagatcccactcatcttgggtatctggggaggcaagggtcaaggaaa 535 ||||| || ||||| ||||| || ||||||||||| ||||||||||| Sbjct: 7541 aagattcctctcatattgggcatttggggaggcaaaggtcaaggaaa 7495
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 259 ccgacgaccagcaggacatcacc 281 ||||||||||||||||||||||| Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 301 actcgctcttccaggcgcccac 322 |||||||||||||||||||||| Sbjct: 2553524 actcgctcttccaggcgcccac 2553503
>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome Length = 1173390 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 116 gaagaagctcaagaagcaggtg 137 |||||||||||||||||||||| Sbjct: 632957 gaagaagctcaagaagcaggtg 632978
>emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA Length = 929 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 cagcacagagatggctgctgc 64 ||||||||||||||||||||| Sbjct: 531 cagcacagagatggctgctgc 511
>emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA Length = 939 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 cagcacagagatggctgctgc 64 ||||||||||||||||||||| Sbjct: 541 cagcacagagatggctgctgc 521
>emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA Length = 992 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 cagcacagagatggctgctgc 64 ||||||||||||||||||||| Sbjct: 595 cagcacagagatggctgctgc 575
>emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA Length = 1318 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 cagcacagagatggctgctgc 64 ||||||||||||||||||||| Sbjct: 932 cagcacagagatggctgctgc 912
>emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA Length = 1006 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 cagcacagagatggctgctgc 64 ||||||||||||||||||||| Sbjct: 609 cagcacagagatggctgctgc 589
>emb|BX321920.7| Zebrafish DNA sequence from clone DKEY-43F15 in linkage group 16, complete sequence Length = 92059 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 529 aaggaaaatattccagtgtga 549 ||||||||||||||||||||| Sbjct: 58514 aaggaaaatattccagtgtga 58534
>ref|XM_685291.1| PREDICTED: Danio rerio hypothetical protein LOC561889 (LOC561889), mRNA Length = 1008 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 529 aaggaaaatattccagtgtga 549 ||||||||||||||||||||| Sbjct: 927 aaggaaaatattccagtgtga 907
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 catggcagcggagaacatcg 210 |||||||||||||||||||| Sbjct: 1379894 catggcagcggagaacatcg 1379875
>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds Length = 2103 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome Length = 10732 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 atctccgacgaccagcaggacatc 278 |||||| ||||||||||||||||| Sbjct: 8676 atctcccacgaccagcaggacatc 8653
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gcagcggagaacatcgacga 214 |||||||||||||||||||| Sbjct: 173412 gcagcggagaacatcgacga 173393
>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA Length = 1685 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 cccacgggcgacggcacccacgag 341 ||||||||||||| |||||||||| Sbjct: 1369 cccacgggcgacgtcacccacgag 1392
>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) (AR), mRNA Length = 3577 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gcaagagctccaaggccaac 179 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1), mRNA Length = 2502 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ctgccttctcctccaccgtc 80 |||||||||||||||||||| Sbjct: 240861 ctgccttctcctccaccgtc 240842
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 ccctgcccaacatcaagatc 494 |||||||||||||||||||| Sbjct: 1130357 ccctgcccaacatcaagatc 1130376
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 catggcagcggagaacatcg 210 |||||||||||||||||||| Sbjct: 1380755 catggcagcggagaacatcg 1380736
>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila) (NOTCH1), mRNA Length = 9312 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 cccacgggcgacggcacccacgag 341 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:1494 IMAGE:3533568), complete cds Length = 2464 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 722 tggctgctgccttctcctcc 703
>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding protein 4 (LOC506402), mRNA Length = 7219 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 ctgctgccttctcctccacc 77 |||||||||||||||||||| Sbjct: 5008 ctgctgccttctcctccacc 4989
>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence Length = 457 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 ctgctgccttctcctccacc 77 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence Length = 470 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 ctgctgccttctcctccacc 77 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1) partial mRNA Length = 22443 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 gaagaagctcaagaagcagg 135 |||||||||||||||||||| Sbjct: 8385 gaagaagctcaagaagcagg 8404
>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:5049 IMAGE:2900024), complete cds Length = 3237 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 232 tggctgctgccttctcctcc 213
>gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, complete sequence Length = 193170 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 411 ggcttctacatcgctcctgctttc 434 ||||||| |||||||||||||||| Sbjct: 147044 ggcttctgcatcgctcctgctttc 147067
>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3' end of the gene for activator of G-protein signalling 3 (AGS3), two novel genes, the CARD9 gene for caspase recruitment domain family member 9, the SNAPC4 gene for a 190kDa small nuclear RNA activating complex polypeptide 4, the SDCCAG3 gene for serologically defined colon cancer antigen 3, the INPP5E gene for a 72kDa inositol polyphosphate-5-phosphatase, the gene for phosphatidylinositol polyphosphate 5-phosphatase type IV (PPI5PIV), a novel gene (KIAA0310), the 3' end of the NOTCH1 gene for Notch homolog 1 translocation-associated (Drosophila) and twenty CpG islands, complete sequence Length = 188462 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 318 cccacgggcgacggcacccacgag 341 ||||||||||||| |||||||||| Sbjct: 166513 cccacgggcgacgtcacccacgag 166490
>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the gene for Hermansky-Pudlak syndrome-6 protein (HPS6), two pseudogenes for transcription elongation factor B (SIII), polypeptide 1, the LDB1 gene for LIM domain binding 1, a novel gene (KIAA0595), the NOLC1 gene for nucleolar and coiled-body phosphoprotein 1 and five CpG islands, complete sequence Length = 158434 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 101054 tggctgctgccttctcctcc 101035
>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body phosphoprotein 1 mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence Length = 147210 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 ccagagggaagggcatcgtg 299 |||||||||||||||||||| Sbjct: 35948 ccagagggaagggcatcgtg 35967
>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1812 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 717 tggctgctgccttctcctcc 698
>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar to H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2288 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 570 tggctgctgccttctcctcc 551
>gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, complete sequence Length = 141442 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 gtccatctctccaaaaactt 469 |||||||||||||||||||| Sbjct: 63248 gtccatctctccaaaaactt 63229
>gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-470F15, complete sequence Length = 177104 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 acagagatggctgctgcctt 67 |||||||||||||||||||| Sbjct: 121162 acagagatggctgctgcctt 121143
>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 Length = 2005935 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 aagggtcaaggaaaatattc 541 |||||||||||||||||||| Sbjct: 429307 aagggtcaaggaaaatattc 429326
>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds Length = 3577 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gcaagagctccaaggccaac 179 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence Length = 81641 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 ccagagggaagggcatcgtg 299 |||||||||||||||||||| Sbjct: 47211 ccagagggaagggcatcgtg 47230
>gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome 16, complete sequence Length = 180261 Score = 40.1 bits (20), Expect = 7.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 31 aaggtcgaccaagcagcacagagatggctgctgccttctc 70 |||||| ||||| ||||||| || ||||||||||||||| Sbjct: 111680 aaggtccaccaatgagcacagtgagggctgctgccttctc 111719
>gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 of 195 of the complete sequence Length = 10900 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ccctgcccaacatcaagatc 494 |||||||||||||||||||| Sbjct: 7760 ccctgcccaacatcaagatc 7741
>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds Length = 7693 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 cccacgggcgacggcacccacgag 341 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome V, complete sequence Length = 130299 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 caaggccaacaggttcacagtcat 193 ||||||||||||||||| |||||| Sbjct: 13824 caaggccaacaggttcagagtcat 13847
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 cgatatctccgacgaccagc 270 |||||||||||||||||||| Sbjct: 4182002 cgatatctccgacgaccagc 4181983
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 ccctgcccaacatcaagatc 494 |||||||||||||||||||| Sbjct: 1147720 ccctgcccaacatcaagatc 1147739
>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete sequence Length = 219072 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 411 ggcttctacatcgctcctgctttc 434 ||||||| |||||||||||||||| Sbjct: 141825 ggcttctgcatcgctcctgctttc 141848
>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V, complete sequence Length = 105589 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 170 caaggccaacaggttcacagtcat 193 ||||||||||||||||| |||||| Sbjct: 27506 caaggccaacaggttcagagtcat 27483
>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence Length = 187148 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 aagaagctcaagaagcaggt 136 |||||||||||||||||||| Sbjct: 44669 aagaagctcaagaagcaggt 44650
>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209755 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 46900 tggctgctgccttctcctcc 46919
>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds Length = 3727 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 708 tggctgctgccttctcctcc 689
>dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-56O15, complete sequences Length = 162128 Score = 40.1 bits (20), Expect = 7.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 31 aaggtcgaccaagcagcacagagatggctgctgccttctc 70 |||||| ||||| ||||||| || ||||||||||||||| Sbjct: 108212 aaggtccaccaatgagcacagtgagggctgctgccttctc 108173
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 ccctgcccaacatcaagatc 494 |||||||||||||||||||| Sbjct: 1144872 ccctgcccaacatcaagatc 1144891
>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome Length = 2056416 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 gagatggctgctgccttctcctcc 74 ||||||||||||||||||| |||| Sbjct: 472845 gagatggctgctgccttctgctcc 472822
>gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltransferase (cdsA), group 1 outer membrane protein (omp1), LpxD (lpxD), FabZ (fabZ), and LpxA (lpxA) genes, complete cds Length = 8895 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ccctgcccaacatcaagatc 494 |||||||||||||||||||| Sbjct: 8238 ccctgcccaacatcaagatc 8219
>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end Length = 7332 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 cccacgggcgacggcacccacgag 341 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2502 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,640,304 Number of Sequences: 3902068 Number of extensions: 4640304 Number of successful extensions: 86046 Number of sequences better than 10.0: 122 Number of HSP's better than 10.0 without gapping: 122 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85501 Number of HSP's gapped (non-prelim): 533 length of query: 551 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 528 effective length of database: 17,143,297,704 effective search space: 9051661187712 effective search space used: 9051661187712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
