>NORC_PARDE (Q51662) Nitric-oxide reductase subunit C (EC 1.7.99.7) (Nitric|
           oxide reductase cytochrome c subunit) (NOR small
           subunit)
          Length = 149

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 125 MTEERMKTISDALLSTSTIFRTKHWPQNPA 36
           +T+E  + +SD LL T TI  T++WP N A
Sbjct: 120 LTDEEFRALSDFLLWTGTI-NTQNWPPNDA 148

>BMS1_HUMAN (Q14692) Ribosome biogenesis protein BMS1 homolog|
          Length = 1282

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 123 HLRQCSYHGCCRDGEEHLDDQQARIHGVPQLLRVNQPSRRPQHR 254
           +LR+  Y     D EE  DD    + G   L RVNQP R  +H+
Sbjct: 688 NLRKLIYGTVTEDNEEEDDDTLEELGG---LFRVNQPDRECKHK 728

>RPB6_RAT (O88828) DNA-directed RNA polymerases I, II, and III 14.4 kDa|
           polypeptide (EC 2.7.7.6) (RPB6) (RPABC14.4) (RPB14.4)
          Length = 127

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 251 SGERTQANT*-LTSPLPTPFKFTSVQGYKNKEAAACAPRLV 370
           SGER QAN   +T+P  T ++   V G +  + A CAP +V
Sbjct: 41  SGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMV 81

>RPB6_PONPY (Q5R592) DNA-directed RNA polymerases I, II, and III 14.4 kDa|
           polypeptide (EC 2.7.7.6) (RPB6) (RPABC14.4) (RPB14.4)
          Length = 127

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 251 SGERTQANT*-LTSPLPTPFKFTSVQGYKNKEAAACAPRLV 370
           SGER QAN   +T+P  T ++   V G +  + A CAP +V
Sbjct: 41  SGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMV 81

>RPB6_MOUSE (P61219) DNA-directed RNA polymerases I, II, and III 14.4 kDa|
           polypeptide (EC 2.7.7.6) (RPB6) (RPABC14.4) (RPB14.4)
          Length = 127

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 251 SGERTQANT*-LTSPLPTPFKFTSVQGYKNKEAAACAPRLV 370
           SGER QAN   +T+P  T ++   V G +  + A CAP +V
Sbjct: 41  SGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMV 81

>RPB6_HUMAN (P61218) DNA-directed RNA polymerases I, II, and III 14.4 kDa|
           polypeptide (EC 2.7.7.6) (RPB6) (RPABC14.4) (RPB14.4)
           (RPABC2)
          Length = 127

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 251 SGERTQANT*-LTSPLPTPFKFTSVQGYKNKEAAACAPRLV 370
           SGER QAN   +T+P  T ++   V G +  + A CAP +V
Sbjct: 41  SGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMV 81

>RPB6_CRIGR (P61217) DNA-directed RNA polymerases I, II, and III 14.4 kDa|
           polypeptide (EC 2.7.7.6) (RPB6) (RPABC14.4) (RPB14.4)
          Length = 127

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 251 SGERTQANT*-LTSPLPTPFKFTSVQGYKNKEAAACAPRLV 370
           SGER QAN   +T+P  T ++   V G +  + A CAP +V
Sbjct: 41  SGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMV 81


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,631,442
Number of Sequences: 219361
Number of extensions: 1426977
Number of successful extensions: 3836
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3794
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)