ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63d10 |
|---|---|
| Clone Library Name | barley_pub |
>COLL2_MIMIV (Q5UQ13) Collagen-like protein 2| Length = 1595 Score = 35.4 bits (80), Expect = 0.096 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Frame = +3 Query: 147 GGGKPGADEEAKKNPFFADFSGKFTDAKSLIPAFPSPGTGSLFAGGRGKKDQQTVF-VAG 323 GGG PG + A F G T L+ P+PGTGS G G Q + + +G Sbjct: 1439 GGGNPGINSAADTASFIKGGDGG-TVTNPLLTTQPTPGTGSTSTGSAGGNGQMSFYCFSG 1497 Query: 324 ATGQTG 341 A G G Sbjct: 1498 AGGGAG 1503
>MK07_HUMAN (Q13164) Mitogen-activated protein kinase 7 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 5) (ERK-5) (ERK4) (BMK1 kinase) Length = 815 Score = 33.1 bits (74), Expect = 0.48 Identities = 41/163 (25%), Positives = 56/163 (34%), Gaps = 21/163 (12%) Frame = -3 Query: 448 SLYAAASRANSCADSRSGTPARTAKPCRSSVCAMRTPVCPVAPATNTVCWSFFPLPPANS 269 SL AS C D +P + C P CP PA +T+ + P PP S Sbjct: 403 SLQPVASEPG-CPDVEMPSPWAPSGDCAMESPPPAPPPCP-GPAPDTIDLTLQPPPPV-S 459 Query: 268 EPVPGEGKAGISD----------LASVNLPLKSAKKGFFXXXXXXXXXXXPTRQRKDGAR 119 EP P + ISD L S+ L+ RQR+ + Sbjct: 460 EPAPPKKDGAISDNTKAALKAALLKSLRSRLRDGPSAPLEAPEPRKPVTAQERQREREEK 519 Query: 118 RRSGEDKG-----------RKEGGLEVSAGGMAGCQAGVTRSN 23 RR +++ RKE G S G AG+ S+ Sbjct: 520 RRRRQERAKEREKRRQERERKERGAGASGGPSTDPLAGLVLSD 562
>CSP_PLACL (P08675) Circumsporozoite protein precursor (CS)| Length = 378 Score = 32.0 bits (71), Expect = 1.1 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = -3 Query: 130 DGARRRSGEDKGRKEGGLEVSAGGMAGCQAG 38 DGAR G G +EGG + G AG QAG Sbjct: 201 DGARAEDGAPAGNREGGQAGAGGNQAGGQAG 231
>YAGR_ECOLI (P77489) Putative xanthine dehydrogenase yagR molybdenum-binding| subunit (EC 1.17.1.4) Length = 732 Score = 31.6 bits (70), Expect = 1.4 Identities = 38/106 (35%), Positives = 48/106 (45%), Gaps = 7/106 (6%) Frame = +3 Query: 198 ADFSGKFTDAKSLIPAFPSPGTGSLFAGGRGKKDQQT-VFVAGATGQTGVRIAQTLLRQG 374 AD SGK T +G+L G QQ+ + AGA TG+R+A L +G Sbjct: 293 ADQSGKITAISH------ESWSGNLPGGTPETAVQQSELLYAGANRHTGLRLATLDLPEG 346 Query: 375 FAVRA-----GVPDLESA-QELARLAAAYRLISPAEARRLNAVKSD 494 A+RA G+ LE A ELA A I P E R LN + D Sbjct: 347 NAMRAPGEAPGLMALEIAIDELAEKAG----IDPVEFRILNDTQVD 388
>YAGR_ECO57 (Q8X6J4) Putative xanthine dehydrogenase yagR molybdenum-binding| subunit (EC 1.17.1.4) Length = 732 Score = 31.6 bits (70), Expect = 1.4 Identities = 38/106 (35%), Positives = 48/106 (45%), Gaps = 7/106 (6%) Frame = +3 Query: 198 ADFSGKFTDAKSLIPAFPSPGTGSLFAGGRGKKDQQT-VFVAGATGQTGVRIAQTLLRQG 374 AD SGK T +G+L G QQ+ + AGA TG+R+A L +G Sbjct: 293 ADQSGKITAISH------ESWSGNLPGGTPETAVQQSELLYAGANRHTGLRLATLDLPEG 346 Query: 375 FAVRA-----GVPDLESA-QELARLAAAYRLISPAEARRLNAVKSD 494 A+RA G+ LE A ELA A I P E R LN + D Sbjct: 347 NAMRAPGEAPGLMALEIAIDELAEKAG----IDPVEFRILNDTQID 388
>DHB2_RAT (Q62730) Estradiol 17-beta-dehydrogenase 2 (EC 1.1.1.62)| (17-beta-HSD 2) (17-beta-hydroxysteroid dehydrogenase 2) Length = 381 Score = 30.8 bits (68), Expect = 2.4 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = +3 Query: 297 DQQTVFVAGATGQTGVRIAQTLLRQGFAVRAGVPDLE--SAQELAR 428 DQ+ V V GA G +A+ L + GF V AGV D E A+EL + Sbjct: 82 DQKAVLVTGADSGFGHALAKHLDKLGFTVFAGVLDKEGPGAEELRK 127
>TTBK2_MOUSE (Q3UVR3) Tau-tubulin kinase 2| Length = 1243 Score = 30.4 bits (67), Expect = 3.1 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = -1 Query: 339 PSAPWRPRRTPSVGPSFPSHQQTASLFPAR-GRP 241 P +P PRR+PS P S +T+S P+R GRP Sbjct: 1140 PKSPVVPRRSPSASPRSSSLPRTSSSSPSRAGRP 1173
>NDUA9_NEUCR (P25284) NADH-ubiquinone oxidoreductase 40 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-40KD) (CI-40KD) Length = 375 Score = 30.4 bits (67), Expect = 3.1 Identities = 17/35 (48%), Positives = 17/35 (48%) Frame = +3 Query: 279 GGRGKKDQQTVFVAGATGQTGVRIAQTLLRQGFAV 383 GGR T V GATGQ G I L RQG V Sbjct: 44 GGRSSLGGHTATVFGATGQLGRYIVNRLARQGCTV 78
>TTBK2_HUMAN (Q6IQ55) Tau-tubulin kinase 2 (EC 2.7.11.1)| Length = 1244 Score = 30.4 bits (67), Expect = 3.1 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = -1 Query: 339 PSAPWRPRRTPSVGPSFPSHQQTASLFPAR-GRP 241 P +P PRR+PS P S +T+S P+R GRP Sbjct: 1141 PKSPVVPRRSPSASPRSSSLPRTSSSSPSRAGRP 1174
>RAD23_ORYSA (Q40742) Putative DNA repair protein RAD23 (OsRAD23)| Length = 392 Score = 30.4 bits (67), Expect = 3.1 Identities = 20/65 (30%), Positives = 29/65 (44%) Frame = -3 Query: 424 ANSCADSRSGTPARTAKPCRSSVCAMRTPVCPVAPATNTVCWSFFPLPPANSEPVPGEGK 245 ++S A + S P+ A P ++ V A PVAPAT P P A + P P Sbjct: 80 SSSSAPATSKAPSNQAPPTQT-VPAAPASQAPVAPATTVPVTVSAPTPTATASPAPAVAV 138 Query: 244 AGISD 230 + +D Sbjct: 139 SSEAD 143
>DHB2_MOUSE (P51658) Estradiol 17-beta-dehydrogenase 2 (EC 1.1.1.62)| (17-beta-HSD 2) (17-beta-hydroxysteroid dehydrogenase 2) Length = 381 Score = 30.4 bits (67), Expect = 3.1 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = +3 Query: 297 DQQTVFVAGATGQTGVRIAQTLLRQGFAVRAGVPDLE--SAQELAR 428 DQ+ V V GA G +A+ L + GF V AGV D E A+EL + Sbjct: 82 DQKAVLVTGADSGFGHGLAKHLDKLGFTVFAGVLDKEGPGAEELRK 127
>BIOA_MYCLE (P45488) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase| (EC 2.6.1.62) (7,8-diamino-pelargonic acid aminotransferase) (DAPA aminotransferase) Length = 436 Score = 30.0 bits (66), Expect = 4.0 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = -2 Query: 434 GKPGQLLRRLEVWNPGAHGETLPQQRLCNAD 342 G+P + RRL W G HG+TL +C+ D Sbjct: 145 GQPAK--RRLMTWRGGYHGDTLTPMSICDPD 173
>ARAE2_ORYSA (Q8H0B6) Putative UDP-arabinose 4-epimerase 2 (EC 5.1.3.5)| (UDP-D-xylose 4-epimerase 2) (UDP-galactose 4-epimerase-like protein 2) (OsUEL-2) Length = 391 Score = 30.0 bits (66), Expect = 4.0 Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 5/109 (4%) Frame = +3 Query: 210 GKFTDAKSL-----IPAFPSPGTGSLFAGGRGKKDQQTVFVAGATGQTGVRIAQTLLRQG 374 GKFT A +L I SPG S R + V V G G G LLR Sbjct: 14 GKFTVAVALTVMCIIVLKQSPGFTSTSVFSRHEIGVTHVLVTGGAGYIGSHATLRLLRDN 73 Query: 375 FAVRAGVPDLESAQELARLAAAYRLISPAEARRLNAVKSDFDDTEAIAK 521 + R + D S + + RL E RL + +D D +A+ K Sbjct: 74 Y--RVTIVDNLSRGNMGAVRVLQRLF--PEPGRLQFIYADLGDAKAVNK 118
>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related mesenchymal modulator) (CReMM) (Chromatin remodeling factor CHROM1) (Peroxisomal proliferator-activated receptor A-inter Length = 2897 Score = 30.0 bits (66), Expect = 4.0 Identities = 16/47 (34%), Positives = 29/47 (61%) Frame = -3 Query: 499 SKSDFTALSRRASAGEMSLYAAASRANSCADSRSGTPARTAKPCRSS 359 S SD + S R+S S +++S ++SC+ SRSG+ + ++ C S+ Sbjct: 2130 SSSDSDSDSERSSCSSRS--SSSSSSSSCSHSRSGSSSSSSSSCSSA 2174
>BAT3_MOUSE (Q9Z1R2) Large proline-rich protein BAT3 (HLA-B-associated| transcript 3) Length = 1154 Score = 29.6 bits (65), Expect = 5.3 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 2/78 (2%) Frame = +3 Query: 240 PAFPS--PGTGSLFAGGRGKKDQQTVFVAGATGQTGVRIAQTLLRQGFAVRAGVPDLESA 413 P+ P P +G+L G G V+G GQ LL Q V G P + A Sbjct: 515 PSHPGGPPVSGALQGAGLGTNTSLAQMVSGLVGQ--------LLMQPVLVAQGTPGMAQA 566 Query: 414 QELARLAAAYRLISPAEA 467 Q A+ A + +PA A Sbjct: 567 QAQAQAQAQAQAQAPAPA 584
>HRX_MOUSE (P55200) Zinc finger protein HRX (ALL-1) (Fragment)| Length = 3866 Score = 29.6 bits (65), Expect = 5.3 Identities = 22/91 (24%), Positives = 33/91 (36%) Frame = -1 Query: 513 SPQCHRNPTSPR*AGVPPRVK*VCTRRQAGPTPAPTRGLEPXXXXXXXXXXASVQCGHPS 334 +P P + + PP K V + + G PAP EP +S Q P+ Sbjct: 1142 APPPREEPAPKKSSSEPPPRKPVEEKSEEGGAPAPAPAPEPKQVSAPASRKSSKQVSQPA 1201 Query: 333 APWRPRRTPSVGPSFPSHQQTASLFPARGRP 241 A P + PS P + P + +P Sbjct: 1202 AV-VPPQPPSTAPQKKEAPKAVPSEPKKKQP 1231
>DFRA_SYNY3 (P73212) Putative dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)| (Dihydrokaempferol 4-reductase) Length = 343 Score = 29.6 bits (65), Expect = 5.3 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +3 Query: 312 FVAGATGQTGVRIAQTLLRQGFAVRA 389 FV G TG G + + LL QG+ VRA Sbjct: 14 FVTGGTGFVGANLVRHLLEQGYQVRA 39
>PARP_SARPE (Q11208) Poly [ADP-ribose] polymerase (EC 2.4.2.30) (PARP) (ADPRT)| (NAD(+) ADP-ribosyltransferase) (Poly[ADP-ribose] synthetase) Length = 996 Score = 29.3 bits (64), Expect = 6.9 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -3 Query: 133 KDGARRRSGEDKGRKEGGLEVSAGGMAGCQ 44 K GA+R GE+ K+ G+E + G A C+ Sbjct: 98 KKGAKRSKGENNAIKDFGIEYAKSGRASCR 127
>CHD9_MOUSE (Q8BYH8) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein) (PPAR-alpha-interacting complex protein 320 kDa) Length = 2885 Score = 29.3 bits (64), Expect = 6.9 Identities = 16/47 (34%), Positives = 29/47 (61%) Frame = -3 Query: 499 SKSDFTALSRRASAGEMSLYAAASRANSCADSRSGTPARTAKPCRSS 359 S SD + S R+S S +++S ++SC+ SRSG+ + ++ C S+ Sbjct: 2129 SSSDSDSDSARSSCSSRSS-SSSSSSSSCSHSRSGSSSSSSSSCSSA 2174
>GATB_BORPE (Q7VSN3) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B| (EC 6.3.5.-) (Asp/Glu-ADT subunit B) Length = 484 Score = 29.3 bits (64), Expect = 6.9 Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Frame = +3 Query: 378 AVRAGVPDLESAQELARLAAAYRLISPA-EARRLNAVKSDFDDTEAIAK 521 AVRAG+P+L +AQ AR A Y L PA +A +L ++ D EA+A+ Sbjct: 294 AVRAGMPELPAAQR-ARFEADYGL--PAYDAAQLTVSRAMADYFEAVAR 339
>GATB_BORPA (Q7W3H6) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B| (EC 6.3.5.-) (Asp/Glu-ADT subunit B) Length = 484 Score = 29.3 bits (64), Expect = 6.9 Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Frame = +3 Query: 378 AVRAGVPDLESAQELARLAAAYRLISPA-EARRLNAVKSDFDDTEAIAK 521 AVRAG+P+L +AQ AR A Y L PA +A +L ++ D EA+A+ Sbjct: 294 AVRAGMPELPTAQR-ARFEADYGL--PAYDAAQLTVSRAMADYFEAVAR 339
>GATB_BORBR (Q7WEV0) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B| (EC 6.3.5.-) (Asp/Glu-ADT subunit B) Length = 484 Score = 29.3 bits (64), Expect = 6.9 Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Frame = +3 Query: 378 AVRAGVPDLESAQELARLAAAYRLISPA-EARRLNAVKSDFDDTEAIAK 521 AVRAG+P+L +AQ AR A Y L PA +A +L ++ D EA+A+ Sbjct: 294 AVRAGMPELPAAQR-ARFEADYGL--PAYDAAQLTVSRAMADYFEAVAR 339
>PTN12_MOUSE (P35831) Tyrosine-protein phosphatase non-receptor type 12 (EC| 3.1.3.48) (Protein-tyrosine phosphatase P19) (P19-PTP) (MPTP-PEST) Length = 775 Score = 29.3 bits (64), Expect = 6.9 Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 3/85 (3%) Frame = -3 Query: 502 SSKSDFTALSRRASAGEMSLYAAASRANSCADSRSGTPARTAKPCRSSVCAMRTPV---C 332 SS D T+ + SAG + + + NSCAD + R A+ S TP C Sbjct: 468 SSVVDRTSKPQELSAGALKVDDVSQ--NSCADCSAAHSHRAAESSEESQSNSHTPPRPDC 525 Query: 331 PVAPATNTVCWSFFPLPPANSEPVP 257 V WS P N+ PVP Sbjct: 526 LPLDKKGHVTWSLH--GPENATPVP 548
>CHIP_BETVU (P42820) Acidic endochitinase SP2 precursor (EC 3.2.1.14)| Length = 288 Score = 28.9 bits (63), Expect = 9.0 Identities = 18/60 (30%), Positives = 23/60 (38%) Frame = -3 Query: 400 SGTPARTAKPCRSSVCAMRTPVCPVAPATNTVCWSFFPLPPANSEPVPGEGKAGISDLAS 221 +GTP C+S C TP P P T T P G G + +SD+ S Sbjct: 46 TGTPYCGVGNCQSGPCEGGTPTTPTTPTTPTT-------------PGTGGGGSSVSDIVS 92
>RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology domains-containing| protein 1 (RAPH1) (Lamellipodin) (Proline-rich EVH1 ligand 2) (PREL-2) (Protein RMO1) (Amyotrophic lateral sclerosis 2 chromosomal region candidate 9 gene protein) Length = 1302 Score = 28.9 bits (63), Expect = 9.0 Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 1/88 (1%) Frame = -1 Query: 516 QSPQCHRNPTSPR*AGVPPRVK*VCTRRQAGPTPAPTRGLEPXXXXXXXXXXASVQCGHP 337 Q C + P SP + VP VK + ++ PTP P +P S Sbjct: 895 QQSFCAKPPPSPL-SPVPSVVKQIASQFPPPPTP-PAMESQPLKPVPANVAPQSPPAVKA 952 Query: 336 SAPWRPRRTPSVGPSFPSHQQTASL-FP 256 W+P P P FP +SL FP Sbjct: 953 KPKWQPSSIPVPSPDFPPPPPESSLVFP 980
>TBCD4_HUMAN (O60343) TBC1 domain family member 4 (Akt substrate of 160 kDa)| (AS160) Length = 1298 Score = 28.9 bits (63), Expect = 9.0 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Frame = -2 Query: 440 RGGKPGQLLRRLEVWNPGAHGETLPQQRLCNADTR--LPRGA 321 RG PG+ L LEV PG+ G+ LP++ DT LP GA Sbjct: 244 RGPDPGEDLADLEVVVPGSPGDCLPEE-ADGTDTHLGLPAGA 284
>PANK1_HUMAN (Q8TE04) Pantothenate kinase 1 (EC 2.7.1.33) (Pantothenic acid| kinase 1) (hPanK1) (hPanK) Length = 598 Score = 28.9 bits (63), Expect = 9.0 Identities = 24/75 (32%), Positives = 29/75 (38%) Frame = -3 Query: 430 SRANSCADSRSGTPARTAKPCRSSVCAMRTPVCPVAPATNTVCWSFFPLPPANSEPVPGE 251 SR A G R+ + RS + PV A A N + + F PP V Sbjct: 126 SRGPRTAPPAPGMGDRSGQQERSVPHSPGAPVGTSAAAVNGLLHNGFHPPPVQPPHVCSR 185 Query: 250 GKAGISDLASVNLPL 206 G G SD A LPL Sbjct: 186 GPVGGSDAAPQRLPL 200 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,425,082 Number of Sequences: 219361 Number of extensions: 1426379 Number of successful extensions: 5815 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 5269 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5689 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
