Clone Information

BLAST Search Result

Clone Name	bah63d10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC136521.2\| Oryza sativa (japonica cultivar-group) chromosome...	208	1e-50
2	gb\|AC134345.2\| Oryza sativa (jpaonica cultivar-group) chromosome...	208	1e-50
3	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	208	1e-50
4	dbj\|AK108453.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	208	1e-50
5	dbj\|AK099865.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	208	1e-50
6	dbj\|AK073234.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	208	1e-50
7	dbj\|AP007255.1\| Magnetospirillum magneticum AMB-1 DNA, complete ...	44	0.45
8	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.45
9	dbj\|AP004365.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.45
10	dbj\|AP003263.2\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.45
11	gb\|CP000148.1\| Geobacter metallireducens GS-15, complete genome	42	1.8
12	gb\|CP000356.1\| Sphingopyxis alaskensis RB2256, complete genome	42	1.8
13	gb\|BC014091.2\| Homo sapiens family with sequence similarity 109,...	42	1.8
14	gb\|BC034809.1\| Homo sapiens family with sequence similarity 109,...	42	1.8
15	dbj\|AK056918.1\| Homo sapiens cDNA FLJ32356 fis, clone PROST20079...	42	1.8
16	dbj\|AB168244.1\| Macaca fascicularis testis cDNA clone: QtsA-1070...	42	1.8
17	gb\|BC018996.2\| Homo sapiens family with sequence similarity 109,...	42	1.8
18	ref\|NM_144671.2\| Homo sapiens family with sequence similarity 10...	42	1.8
19	gb\|AC005805.12\| Homo sapiens 12 PAC RP3-473L9 (Roswell Park Canc...	42	1.8
20	gb\|AC164648.3\| Mus musculus BAC clone RP23-434H4 from chromosome...	40	7.1
21	gb\|CP000112.1\| Desulfovibrio desulfuricans G20, complete genome	40	7.1
22	ref\|NM_181682.1\| Mus musculus desmoglein 1 beta (Dsg1b), mRNA	40	7.1
23	gb\|AC102410.5\| Mus musculus chromosome 18, clone RP24-369O1, com...	40	7.1
24	gb\|AC145970.2\| Pan troglodytes BAC clone RP43-17L12 from 7, comp...	40	7.1
25	gb\|AC125205.4\| Mus musculus BAC clone RP23-238I2 from 14, comple...	40	7.1
26	emb\|Z98752.16\|HS138B7 Human DNA sequence from clone RP1-138B7 on...	40	7.1
27	emb\|AL390754.18\| Human DNA sequence from clone RP11-17E4 on chro...	40	7.1
28	emb\|AL353704.10\| Human DNA sequence from clone RP11-551M15 on ch...	40	7.1
29	gb\|AY315940.1\| Mus musculus desmoglein 1beta (Dsg1b) mRNA, compl...	40	7.1
30	gb\|AC157798.5\| Mus musculus chromosome 1, clone RP24-153N24, com...	40	7.1
31	gb\|AY192158.1\| Mus musculus desmoglein 5 (Dsg5) mRNA, complete cds	40	7.1
32	emb\|CR555306.1\| Azoarcus sp. EbN1 complete genome	40	7.1
33	gb\|AC012516.15\| Homo sapiens 3 BAC RP11-99A5 (Roswell Park Cance...	40	7.1
34	gb\|AE017285.1\| Desulfovibrio vulgaris subsp. vulgaris str. Hilde...	40	7.1
35	dbj\|AK081473.1\| Mus musculus 16 days embryo head cDNA, RIKEN ful...	40	7.1
36	dbj\|AK016043.1\| Mus musculus adult male testis cDNA, RIKEN full-...	40	7.1
37	dbj\|AK036986.1\| Mus musculus adult female vagina cDNA, RIKEN ful...	40	7.1
38	gb\|AC091633.22\| Homo sapiens 3 BAC RP11-506F8 (Roswell Park Canc...	40	7.1
39	gb\|AC007685.2\|AC007685 Homo sapiens BAC clone RP11-558O12 from Y...	40	7.1
40	gb\|AF157641.2\|AF157641 Desulfitobacterium dehalogenans Hrd6-1 (h...	40	7.1
41	emb\|AJ538734.1\|NTA538734 Nicotiana tabacum cDNA-AFLP-fragment BC...	40	7.1
42	emb\|AL626784.11\| Mouse DNA sequence from clone RP23-392J14 on ch...	40	7.1

>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
            OSJNBa0034M22, complete sequence
          Length = 149435

 Score =  208 bits (105), Expect = 1e-50
 Identities = 207/241 (85%)
 Strand = Plus / Minus

                                                                        
Query: 282  gggaggggaaagaaggaccaacagacggtgttcgtcgcgggcgccacggggcagacgggt 341
            |||||||| | ||||||||  ||||| ||||||||||||||||||||||||||| |||| 
Sbjct: 3131 gggagggggaggaaggacccgcagacagtgttcgtcgcgggcgccacggggcaggcggga 3072

                                                                        
Query: 342  gtccgcattgcacagacgctgctgcggcaaggtttcgccgtgcgcgccggggttccagac 401
            || ||||| || ||||||||||||||||| || |||||||||||||||||||| || |||
Sbjct: 3071 gttcgcatcgcgcagacgctgctgcggcaggggttcgccgtgcgcgccggggtgccggac 3012

                                                                        
Query: 402  ctcgagtcggcgcaggagttggcccggcttgccgccgcgtacagactcatttcacccgcg 461
            |||| ||| || |||||| |||| ||||| ||| |||||||| | |||||||| ||| | 
Sbjct: 3011 ctcgcgtccgcccaggagctggcgcggctcgcctccgcgtaccggctcatttcccccacc 2952

                                                                        
Query: 462  gaggcacgccggctcaacgcggtgaagtcggatttcgatgacactgaggcgattgccaag 521
            ||||| ||||| |||||||||||| |||| |||||||| ||| | |||||||| ||||||
Sbjct: 2951 gaggcgcgccgactcaacgcggtggagtccgatttcgaggaccccgaggcgatcgccaag 2892

             
Query: 522  t 522
            |
Sbjct: 2891 t 2891



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                         
Query: 54   gccatgccgcccgcgctcacctccaaccccccttccttccgcccc 98
            |||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct: 3374 gccatgcctcccgccctcacctccaaccccccctccttccgcccc 3330

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>gb|AC134345.2| Oryza sativa (jpaonica cultivar-group) chromosome 5 PAC clone P0012A07,
             complete sequence
          Length = 136858

 Score =  208 bits (105), Expect = 1e-50
 Identities = 207/241 (85%)
 Strand = Plus / Minus

                                                                         
Query: 282   gggaggggaaagaaggaccaacagacggtgttcgtcgcgggcgccacggggcagacgggt 341
             |||||||| | ||||||||  ||||| ||||||||||||||||||||||||||| |||| 
Sbjct: 75897 gggagggggaggaaggacccgcagacagtgttcgtcgcgggcgccacggggcaggcggga 75838

                                                                         
Query: 342   gtccgcattgcacagacgctgctgcggcaaggtttcgccgtgcgcgccggggttccagac 401
             || ||||| || ||||||||||||||||| || |||||||||||||||||||| || |||
Sbjct: 75837 gttcgcatcgcgcagacgctgctgcggcaggggttcgccgtgcgcgccggggtgccggac 75778

                                                                         
Query: 402   ctcgagtcggcgcaggagttggcccggcttgccgccgcgtacagactcatttcacccgcg 461
             |||| ||| || |||||| |||| ||||| ||| |||||||| | |||||||| ||| | 
Sbjct: 75777 ctcgcgtccgcccaggagctggcgcggctcgcctccgcgtaccggctcatttcccccacc 75718

                                                                         
Query: 462   gaggcacgccggctcaacgcggtgaagtcggatttcgatgacactgaggcgattgccaag 521
             ||||| ||||| |||||||||||| |||| |||||||| ||| | |||||||| ||||||
Sbjct: 75717 gaggcgcgccgactcaacgcggtggagtccgatttcgaggaccccgaggcgatcgccaag 75658

              
Query: 522   t 522
             |
Sbjct: 75657 t 75657



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                          
Query: 54    gccatgccgcccgcgctcacctccaaccccccttccttccgcccc 98
             |||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct: 76140 gccatgcctcccgccctcacctccaaccccccctccttccgcccc 76096

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  208 bits (105), Expect = 1e-50
 Identities = 207/241 (85%)
 Strand = Plus / Minus

                                                                            
Query: 282      gggaggggaaagaaggaccaacagacggtgttcgtcgcgggcgccacggggcagacgggt 341
                |||||||| | ||||||||  ||||| ||||||||||||||||||||||||||| |||| 
Sbjct: 12705610 gggagggggaggaaggacccgcagacagtgttcgtcgcgggcgccacggggcaggcggga 12705551

                                                                            
Query: 342      gtccgcattgcacagacgctgctgcggcaaggtttcgccgtgcgcgccggggttccagac 401
                || ||||| || ||||||||||||||||| || |||||||||||||||||||| || |||
Sbjct: 12705550 gttcgcatcgcgcagacgctgctgcggcaggggttcgccgtgcgcgccggggtgccggac 12705491

                                                                            
Query: 402      ctcgagtcggcgcaggagttggcccggcttgccgccgcgtacagactcatttcacccgcg 461
                |||| ||| || |||||| |||| ||||| ||| |||||||| | |||||||| ||| | 
Sbjct: 12705490 ctcgcgtccgcccaggagctggcgcggctcgcctccgcgtaccggctcatttcccccacc 12705431

                                                                            
Query: 462      gaggcacgccggctcaacgcggtgaagtcggatttcgatgacactgaggcgattgccaag 521
                ||||| ||||| |||||||||||| |||| |||||||| ||| | |||||||| ||||||
Sbjct: 12705430 gaggcgcgccgactcaacgcggtggagtccgatttcgaggaccccgaggcgatcgccaag 12705371

                 
Query: 522      t 522
                |
Sbjct: 12705370 t 12705370



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                             
Query: 54       gccatgccgcccgcgctcacctccaaccccccttccttccgcccc 98
                |||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct: 12705853 gccatgcctcccgccctcacctccaaccccccctccttccgcccc 12705809

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>dbj|AK108453.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-C11, full
           insert sequence
          Length = 1318

 Score =  208 bits (105), Expect = 1e-50
 Identities = 207/241 (85%)
 Strand = Plus / Plus

                                                                       
Query: 282 gggaggggaaagaaggaccaacagacggtgttcgtcgcgggcgccacggggcagacgggt 341
           |||||||| | ||||||||  ||||| ||||||||||||||||||||||||||| |||| 
Sbjct: 354 gggagggggaggaaggacccgcagacagtgttcgtcgcgggcgccacggggcaggcggga 413

                                                                       
Query: 342 gtccgcattgcacagacgctgctgcggcaaggtttcgccgtgcgcgccggggttccagac 401
           || ||||| || ||||||||||||||||| || |||||||||||||||||||| || |||
Sbjct: 414 gttcgcatcgcgcagacgctgctgcggcaggggttcgccgtgcgcgccggggtgccggac 473

                                                                       
Query: 402 ctcgagtcggcgcaggagttggcccggcttgccgccgcgtacagactcatttcacccgcg 461
           |||| ||| || |||||| |||| ||||| ||| |||||||| | |||||||| ||| | 
Sbjct: 474 ctcgcgtccgcccaggagctggcgcggctcgcctccgcgtaccggctcatttcccccacc 533

                                                                       
Query: 462 gaggcacgccggctcaacgcggtgaagtcggatttcgatgacactgaggcgattgccaag 521
           ||||| ||||| |||||||||||| |||| |||||||| ||| | |||||||| ||||||
Sbjct: 534 gaggcgcgccgactcaacgcggtggagtccgatttcgaggaccccgaggcgatcgccaag 593

            
Query: 522 t 522
           |
Sbjct: 594 t 594



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                        
Query: 54  gccatgccgcccgcgctcacctccaaccccccttccttccgcccc 98
           |||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct: 111 gccatgcctcccgccctcacctccaaccccccctccttccgcccc 155

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>dbj|AK099865.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111D24, full
           insert sequence
          Length = 1619

 Score =  208 bits (105), Expect = 1e-50
 Identities = 207/241 (85%)
 Strand = Plus / Plus

                                                                       
Query: 282 gggaggggaaagaaggaccaacagacggtgttcgtcgcgggcgccacggggcagacgggt 341
           |||||||| | ||||||||  ||||| ||||||||||||||||||||||||||| |||| 
Sbjct: 258 gggagggggaggaaggacccgcagacagtgttcgtcgcgggcgccacggggcaggcggga 317

                                                                       
Query: 342 gtccgcattgcacagacgctgctgcggcaaggtttcgccgtgcgcgccggggttccagac 401
           || ||||| || ||||||||||||||||| || |||||||||||||||||||| || |||
Sbjct: 318 gttcgcatcgcgcagacgctgctgcggcaggggttcgccgtgcgcgccggggtgccggac 377

                                                                       
Query: 402 ctcgagtcggcgcaggagttggcccggcttgccgccgcgtacagactcatttcacccgcg 461
           |||| ||| || |||||| |||| ||||| ||| |||||||| | |||||||| ||| | 
Sbjct: 378 ctcgcgtccgcccaggagctggcgcggctcgcctccgcgtaccggctcatttcccccacc 437

                                                                       
Query: 462 gaggcacgccggctcaacgcggtgaagtcggatttcgatgacactgaggcgattgccaag 521
           ||||| ||||| |||||||||||| |||| |||||||| ||| | |||||||| ||||||
Sbjct: 438 gaggcgcgccgactcaacgcggtggagtccgatttcgaggaccccgaggcgatcgccaag 497

            
Query: 522 t 522
           |
Sbjct: 498 t 498



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                       
Query: 54 gccatgccgcccgcgctcacctccaaccccccttccttccgcccc 98
          |||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct: 15 gccatgcctcccgccctcacctccaaccccccctccttccgcccc 59

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>dbj|AK073234.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024F08, full
           insert sequence
          Length = 1715

 Score =  208 bits (105), Expect = 1e-50
 Identities = 207/241 (85%)
 Strand = Plus / Plus

                                                                       
Query: 282 gggaggggaaagaaggaccaacagacggtgttcgtcgcgggcgccacggggcagacgggt 341
           |||||||| | ||||||||  ||||| ||||||||||||||||||||||||||| |||| 
Sbjct: 270 gggagggggaggaaggacccgcagacagtgttcgtcgcgggcgccacggggcaggcggga 329

                                                                       
Query: 342 gtccgcattgcacagacgctgctgcggcaaggtttcgccgtgcgcgccggggttccagac 401
           || ||||| || ||||||||||||||||| || |||||||||||||||||||| || |||
Sbjct: 330 gttcgcatcgcgcagacgctgctgcggcaggggttcgccgtgcgcgccggggtgccggac 389

                                                                       
Query: 402 ctcgagtcggcgcaggagttggcccggcttgccgccgcgtacagactcatttcacccgcg 461
           |||| ||| || |||||| |||| ||||| ||| |||||||| | |||||||| ||| | 
Sbjct: 390 ctcgcgtccgcccaggagctggcgcggctcgcctccgcgtaccggctcatttcccccacc 449

                                                                       
Query: 462 gaggcacgccggctcaacgcggtgaagtcggatttcgatgacactgaggcgattgccaag 521
           ||||| ||||| |||||||||||| |||| |||||||| ||| | |||||||| ||||||
Sbjct: 450 gaggcgcgccgactcaacgcggtggagtccgatttcgaggaccccgaggcgatcgccaag 509

            
Query: 522 t 522
           |
Sbjct: 510 t 510



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                       
Query: 54 gccatgccgcccgcgctcacctccaaccccccttccttccgcccc 98
          |||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct: 27 gccatgcctcccgccctcacctccaaccccccctccttccgcccc 71

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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 8       cgaggcccaccacctgttcgac 29
               ||||||||||||||||||||||
Sbjct: 2670574 cgaggcccaccacctgttcgac 2670553

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                              
Query: 118      gccgcgccccatcctttctctgccgcgtcg 147
                |||||||||| |||||||||||||||||||
Sbjct: 42496885 gccgcgcccc-tcctttctctgccgcgtcg 42496913

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>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0458E05
          Length = 193577

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                           
Query: 118   gccgcgccccatcctttctctgccgcgtcg 147
             |||||||||| |||||||||||||||||||
Sbjct: 17768 gccgcgcccc-tcctttctctgccgcgtcg 17796

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>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0483G10
          Length = 190721

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                            
Query: 118    gccgcgccccatcctttctctgccgcgtcg 147
              |||||||||| |||||||||||||||||||
Sbjct: 156223 gccgcgcccc-tcctttctctgccgcgtcg 156251

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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 179     caagaagaatcccttctttgc 199
               |||||||||||||||||||||
Sbjct: 2508257 caagaagaatcccttctttgc 2508277

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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 140     ccgcgtcggcggcggcaagcc 160
               |||||||||||||||||||||
Sbjct: 2024988 ccgcgtcggcggcggcaagcc 2025008



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 315    gtcgcgggcgccacggggcagacg 338
              |||||||||||||||| |||||||
Sbjct: 240949 gtcgcgggcgccacggcgcagacg 240972

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>gb|BC014091.2| Homo sapiens family with sequence similarity 109, member A, mRNA
            (cDNA clone IMAGE:4328993), complete cds
          Length = 1452

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 270  ctgtttgctggtgggagggga 290
            |||||||||||||||||||||
Sbjct: 1334 ctgtttgctggtgggagggga 1354

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>gb|BC034809.1| Homo sapiens family with sequence similarity 109, member A, mRNA
            (cDNA clone MGC:34643 IMAGE:4943538), complete cds
          Length = 3054

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 270  ctgtttgctggtgggagggga 290
            |||||||||||||||||||||
Sbjct: 2516 ctgtttgctggtgggagggga 2536

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>dbj|AK056918.1| Homo sapiens cDNA FLJ32356 fis, clone PROST2007974, weakly similar to
            ANTER-SPECIFIC PROLINE-RICH PROTEIN APG
          Length = 2524

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 270  ctgtttgctggtgggagggga 290
            |||||||||||||||||||||
Sbjct: 2001 ctgtttgctggtgggagggga 2021

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>dbj|AB168244.1| Macaca fascicularis testis cDNA clone: QtsA-10706, similar to human
            hypothetical protein FLJ32356 (FLJ32356), mRNA, RefSeq:
            NM_144671.2
          Length = 5582

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 270  ctgtttgctggtgggagggga 290
            |||||||||||||||||||||
Sbjct: 5021 ctgtttgctggtgggagggga 5041

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>gb|BC018996.2| Homo sapiens family with sequence similarity 109, member A, mRNA
            (cDNA clone IMAGE:4300218)
          Length = 1452

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 270  ctgtttgctggtgggagggga 290
            |||||||||||||||||||||
Sbjct: 1334 ctgtttgctggtgggagggga 1354

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>ref|NM_144671.2| Homo sapiens family with sequence similarity 109, member A (FAM109A),
            mRNA
          Length = 3054

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 270  ctgtttgctggtgggagggga 290
            |||||||||||||||||||||
Sbjct: 2516 ctgtttgctggtgggagggga 2536

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>gb|AC005805.12| Homo sapiens 12 PAC RP3-473L9 (Roswell Park Cancer Institute Human PAC
             Library) complete sequence
          Length = 113064

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 270   ctgtttgctggtgggagggga 290
             |||||||||||||||||||||
Sbjct: 54388 ctgtttgctggtgggagggga 54368

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>gb|AC164648.3| Mus musculus BAC clone RP23-434H4 from chromosome 18, complete sequence
          Length = 198430

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   tgaggaggccaagaagaatc 189
             ||||||||||||||||||||
Sbjct: 30873 tgaggaggccaagaagaatc 30892

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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 325    ccacggggcagacgggtgtc 344
              ||||||||||||||||||||
Sbjct: 232707 ccacggggcagacgggtgtc 232726

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>ref|NM_181682.1| Mus musculus desmoglein 1 beta (Dsg1b), mRNA
          Length = 3404

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 170  tgaggaggccaagaagaatc 189
            ||||||||||||||||||||
Sbjct: 2502 tgaggaggccaagaagaatc 2483

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>gb|AC102410.5| Mus musculus chromosome 18, clone RP24-369O1, complete sequence
          Length = 164142

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   tgaggaggccaagaagaatc 189
             ||||||||||||||||||||
Sbjct: 37307 tgaggaggccaagaagaatc 37288

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>gb|AC145970.2| Pan troglodytes BAC clone RP43-17L12 from 7, complete sequence
          Length = 182677

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 244   ccttcccctcgccgggaacaggct 267
             |||||||||||||||| |||||||
Sbjct: 59721 ccttcccctcgccggggacaggct 59744

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>gb|AC125205.4| Mus musculus BAC clone RP23-238I2 from 14, complete sequence
          Length = 205957

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 282   gggaggggaaagaaggaccaacag 305
             ||||||||||||| ||||||||||
Sbjct: 51113 gggaggggaaagagggaccaacag 51136

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>emb|Z98752.16|HS138B7 Human DNA sequence from clone RP1-138B7 on chromosome 20q13.12 Contains
             the 3' end of the L3MBTL gene for l(3)mbt-like
             (Drosophila), the SGK2 gene for serum/glucocorticoid
             regulated kinase 2, the 5' end of the C20orf9 gene (NGD5,
             CGI-53), an HSPC194 pseudogene and a CpG island, complete
             sequence
          Length = 84323

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   ggtgggaggggaaagaagga 298
             ||||||||||||||||||||
Sbjct: 33972 ggtgggaggggaaagaagga 33991

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>emb|AL390754.18| Human DNA sequence from clone RP11-17E4 on chromosome 13 Contains
            part of the ARHGEF7 gene forRho guanine nucleotide
            exchange factor (GEF) 7 (KIAA0142) and a CpG island,
            complete sequence
          Length = 78835

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   gccgcccgcgctcacctcca 78
            ||||||||||||||||||||
Sbjct: 1442 gccgcccgcgctcacctcca 1423

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>emb|AL353704.10| Human DNA sequence from clone RP11-551M15 on chromosome 13 Contains three
              novel genes, the 5' end of the ARHGEF7 gene for Rho guanine
              nucleotide exchange factor (GEF) 7 (KIAA0142) and three CpG
              islands, complete sequence
          Length = 117417

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     gccgcccgcgctcacctcca 78
              ||||||||||||||||||||
Sbjct: 116859 gccgcccgcgctcacctcca 116840

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>gb|AY315940.1| Mus musculus desmoglein 1beta (Dsg1b) mRNA, complete cds
          Length = 3183

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 170  tgaggaggccaagaagaatc 189
            ||||||||||||||||||||
Sbjct: 2402 tgaggaggccaagaagaatc 2383

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>gb|AC157798.5| Mus musculus chromosome 1, clone RP24-153N24, complete sequence
          Length = 163087

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   ggggccgatgaggaggccaa 181
             ||||||||||||||||||||
Sbjct: 62572 ggggccgatgaggaggccaa 62553

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>gb|AY192158.1| Mus musculus desmoglein 5 (Dsg5) mRNA, complete cds
          Length = 3404

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 170  tgaggaggccaagaagaatc 189
            ||||||||||||||||||||
Sbjct: 2502 tgaggaggccaagaagaatc 2483

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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 430     ttgccgccgcgtacagactc 449
               ||||||||||||||||||||
Sbjct: 3733986 ttgccgccgcgtacagactc 3733967

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>gb|AC012516.15| Homo sapiens 3 BAC RP11-99A5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 79175

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    gccgcccgcgctcacctcca 78
             ||||||||||||||||||||
Sbjct: 78618 gccgcccgcgctcacctcca 78599

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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 386     cgccggggttccagacctcg 405
               ||||||||||||||||||||
Sbjct: 1987601 cgccggggttccagacctcg 1987620

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>dbj|AK081473.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130019N03 product:histocompatibility 2, M
            region locus 2, full insert sequence
          Length = 1835

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 162  ggggccgatgaggaggccaa 181
            ||||||||||||||||||||
Sbjct: 1471 ggggccgatgaggaggccaa 1490

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>dbj|AK016043.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930545C20 product:hypothetical Cadherin
           cytoplasmic region containing protein, full insert
           sequence
          Length = 1091

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 170 tgaggaggccaagaagaatc 189
           ||||||||||||||||||||
Sbjct: 713 tgaggaggccaagaagaatc 694

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>dbj|AK036986.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
            library, clone:9930033D10 product:DESMOGLEIN 1
            (DESMOSOMAL GLYCOPROTEIN I) (DG1) (DGI) (FRAGMENT)
            homolog [Mus musculus], full insert sequence
          Length = 3966

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 170  tgaggaggccaagaagaatc 189
            ||||||||||||||||||||
Sbjct: 2610 tgaggaggccaagaagaatc 2591

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>gb|AC091633.22| Homo sapiens 3 BAC RP11-506F8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 153896

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    cccccttccttccgcccctt 100
             ||||||||||||||||||||
Sbjct: 29770 cccccttccttccgcccctt 29751

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>gb|AC007685.2|AC007685 Homo sapiens BAC clone RP11-558O12 from Y, complete sequence
          Length = 178377

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 279    ggtgggaggggaaagaagga 298
              ||||||||||||||||||||
Sbjct: 163199 ggtgggaggggaaagaagga 163180

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>gb|AF157641.2|AF157641 Desulfitobacterium dehalogenans Hrd6-1 (hrd6-1) gene, partial cds;
            and putative Ni/Fe hydrogenase small subunit precursor
            (hydA), putative Ni/Fe hydrogenase large subunit
            precursor (hydB), putative Ni/Fe hydrogenase B-type
            cytochrome subunit (hydC), and putative Ni/Fe hydrogenase
            processing protein (hydD) genes, complete cds
          Length = 4883

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 50   gcccgccatgccgcccgcgc 69
            ||||||||||||||||||||
Sbjct: 3196 gcccgccatgccgcccgcgc 3215

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>emb|AJ538734.1|NTA538734 Nicotiana tabacum cDNA-AFLP-fragment BC4-M43-005
          Length = 442

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 ggtgtccgcattgcacagac 358
           ||||||||||||||||||||
Sbjct: 29  ggtgtccgcattgcacagac 48

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>emb|AL626784.11| Mouse DNA sequence from clone RP23-392J14 on chromosome 4, complete
              sequence
          Length = 211585

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 276    gctggtgggaggggaaagaa 295
              ||||||||||||||||||||
Sbjct: 156196 gctggtgggaggggaaagaa 156215


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,494,408
Number of Sequences: 3902068
Number of extensions: 3494408
Number of successful extensions: 75624
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 74922
Number of HSP's gapped (non-prelim): 705
length of query: 522
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 499
effective length of database: 17,143,297,704
effective search space: 8554505554296
effective search space used: 8554505554296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result