Clone Information

BLAST Search Result

Clone Name	bah62o09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC136521.2\| Oryza sativa (japonica cultivar-group) chromosome...	228	1e-56
2	gb\|AC134345.2\| Oryza sativa (jpaonica cultivar-group) chromosome...	228	1e-56
3	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	228	1e-56
4	dbj\|AK108453.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	228	1e-56
5	dbj\|AK099865.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	228	1e-56
6	dbj\|AK073234.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	228	1e-56
7	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.45
8	dbj\|AP004365.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.45
9	dbj\|AP003263.2\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.45
10	gb\|CP000148.1\| Geobacter metallireducens GS-15, complete genome	42	1.8
11	gb\|CP000356.1\| Sphingopyxis alaskensis RB2256, complete genome	42	1.8
12	gb\|BC014091.2\| Homo sapiens family with sequence similarity 109,...	42	1.8
13	gb\|BC034809.1\| Homo sapiens family with sequence similarity 109,...	42	1.8
14	dbj\|AK056918.1\| Homo sapiens cDNA FLJ32356 fis, clone PROST20079...	42	1.8
15	dbj\|AB168244.1\| Macaca fascicularis testis cDNA clone: QtsA-1070...	42	1.8
16	gb\|BC018996.2\| Homo sapiens family with sequence similarity 109,...	42	1.8
17	ref\|NM_144671.2\| Homo sapiens family with sequence similarity 10...	42	1.8
18	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.8
19	gb\|AC005805.12\| Homo sapiens 12 PAC RP3-473L9 (Roswell Park Canc...	42	1.8
20	dbj\|AP005103.5\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.8
21	gb\|CP000031.1\| Silicibacter pomeroyi DSS-3, complete genome	40	7.1
22	gb\|AC164648.3\| Mus musculus BAC clone RP23-434H4 from chromosome...	40	7.1
23	gb\|CP000112.1\| Desulfovibrio desulfuricans G20, complete genome	40	7.1
24	ref\|NM_181682.1\| Mus musculus desmoglein 1 beta (Dsg1b), mRNA	40	7.1
25	gb\|AC102410.5\| Mus musculus chromosome 18, clone RP24-369O1, com...	40	7.1
26	gb\|AC145970.2\| Pan troglodytes BAC clone RP43-17L12 from 7, comp...	40	7.1
27	gb\|AC125205.4\| Mus musculus BAC clone RP23-238I2 from 14, comple...	40	7.1
28	emb\|Z98752.16\|HS138B7 Human DNA sequence from clone RP1-138B7 on...	40	7.1
29	emb\|AL390754.18\| Human DNA sequence from clone RP11-17E4 on chro...	40	7.1
30	emb\|AL353704.10\| Human DNA sequence from clone RP11-551M15 on ch...	40	7.1
31	gb\|AY315940.1\| Mus musculus desmoglein 1beta (Dsg1b) mRNA, compl...	40	7.1
32	gb\|AC157798.5\| Mus musculus chromosome 1, clone RP24-153N24, com...	40	7.1
33	gb\|AY192158.1\| Mus musculus desmoglein 5 (Dsg5) mRNA, complete cds	40	7.1
34	emb\|CR555306.1\| Azoarcus sp. EbN1 complete genome	40	7.1
35	gb\|AC012516.15\| Homo sapiens 3 BAC RP11-99A5 (Roswell Park Cance...	40	7.1
36	gb\|AE017285.1\| Desulfovibrio vulgaris subsp. vulgaris str. Hilde...	40	7.1
37	dbj\|AK081473.1\| Mus musculus 16 days embryo head cDNA, RIKEN ful...	40	7.1
38	dbj\|AK016043.1\| Mus musculus adult male testis cDNA, RIKEN full-...	40	7.1
39	dbj\|AK036986.1\| Mus musculus adult female vagina cDNA, RIKEN ful...	40	7.1
40	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.1
41	gb\|AC091633.22\| Homo sapiens 3 BAC RP11-506F8 (Roswell Park Canc...	40	7.1
42	gb\|AC007685.2\|AC007685 Homo sapiens BAC clone RP11-558O12 from Y...	40	7.1
43	gb\|AF157641.2\|AF157641 Desulfitobacterium dehalogenans Hrd6-1 (h...	40	7.1
44	emb\|AJ538734.1\|NTA538734 Nicotiana tabacum cDNA-AFLP-fragment BC...	40	7.1
45	dbj\|AP005546.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.1
46	dbj\|AK108627.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	7.1
47	dbj\|AK071860.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	7.1
48	gb\|AF027770.1\|AF027770 Mycobacterium smegmatis FxbA (fxbA) gene,...	40	7.1
49	gb\|AF034152.1\|AF034152 Mycobacterium smegmatis exochelin gene cl...	40	7.1
50	emb\|AL626784.11\| Mouse DNA sequence from clone RP23-392J14 on ch...	40	7.1

>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
            OSJNBa0034M22, complete sequence
          Length = 149435

 Score =  228 bits (115), Expect = 1e-56
 Identities = 217/251 (86%)
 Strand = Plus / Minus

                                                                        
Query: 275  gggaggggaaagaaggaccaacagacggtgttcgtcgcgggcgccacggggcagacgggt 334
            |||||||| | ||||||||  ||||| ||||||||||||||||||||||||||| |||| 
Sbjct: 3131 gggagggggaggaaggacccgcagacagtgttcgtcgcgggcgccacggggcaggcggga 3072

                                                                        
Query: 335  gtccgcattgcacagacgctgctgcggcaaggtttcgccgtgcgcgccggggttccagac 394
            || ||||| || ||||||||||||||||| || |||||||||||||||||||| || |||
Sbjct: 3071 gttcgcatcgcgcagacgctgctgcggcaggggttcgccgtgcgcgccggggtgccggac 3012

                                                                        
Query: 395  ctcgagtcggcgcaggagttggcccggcttgccgccgcgtacagactcatttcacccgcg 454
            |||| ||| || |||||| |||| ||||| ||| |||||||| | |||||||| ||| | 
Sbjct: 3011 ctcgcgtccgcccaggagctggcgcggctcgcctccgcgtaccggctcatttcccccacc 2952

                                                                        
Query: 455  gaggcacgccggctcaacgcggtgaagtcggatttcgatgacactgaggcgattgccaag 514
            ||||| ||||| |||||||||||| |||| |||||||| ||| | |||||||| ||||||
Sbjct: 2951 gaggcgcgccgactcaacgcggtggagtccgatttcgaggaccccgaggcgatcgccaag 2892

                       
Query: 515  tccatcggccc 525
            |||||||||||
Sbjct: 2891 tccatcggccc 2881



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                         
Query: 47   gccatgccgcccgcgctcacctccaaccccccttccttccgcccc 91
            |||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct: 3374 gccatgcctcccgccctcacctccaaccccccctccttccgcccc 3330



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 2    catgcccaccacctgttcgacc 23
            ||||||||||||||||||||||
Sbjct: 3409 catgcccaccacctgttcgacc 3388

to top

>gb|AC134345.2| Oryza sativa (jpaonica cultivar-group) chromosome 5 PAC clone P0012A07,
             complete sequence
          Length = 136858

 Score =  228 bits (115), Expect = 1e-56
 Identities = 217/251 (86%)
 Strand = Plus / Minus

                                                                         
Query: 275   gggaggggaaagaaggaccaacagacggtgttcgtcgcgggcgccacggggcagacgggt 334
             |||||||| | ||||||||  ||||| ||||||||||||||||||||||||||| |||| 
Sbjct: 75897 gggagggggaggaaggacccgcagacagtgttcgtcgcgggcgccacggggcaggcggga 75838

                                                                         
Query: 335   gtccgcattgcacagacgctgctgcggcaaggtttcgccgtgcgcgccggggttccagac 394
             || ||||| || ||||||||||||||||| || |||||||||||||||||||| || |||
Sbjct: 75837 gttcgcatcgcgcagacgctgctgcggcaggggttcgccgtgcgcgccggggtgccggac 75778

                                                                         
Query: 395   ctcgagtcggcgcaggagttggcccggcttgccgccgcgtacagactcatttcacccgcg 454
             |||| ||| || |||||| |||| ||||| ||| |||||||| | |||||||| ||| | 
Sbjct: 75777 ctcgcgtccgcccaggagctggcgcggctcgcctccgcgtaccggctcatttcccccacc 75718

                                                                         
Query: 455   gaggcacgccggctcaacgcggtgaagtcggatttcgatgacactgaggcgattgccaag 514
             ||||| ||||| |||||||||||| |||| |||||||| ||| | |||||||| ||||||
Sbjct: 75717 gaggcgcgccgactcaacgcggtggagtccgatttcgaggaccccgaggcgatcgccaag 75658

                        
Query: 515   tccatcggccc 525
             |||||||||||
Sbjct: 75657 tccatcggccc 75647



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                          
Query: 47    gccatgccgcccgcgctcacctccaaccccccttccttccgcccc 91
             |||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct: 76140 gccatgcctcccgccctcacctccaaccccccctccttccgcccc 76096



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 2     catgcccaccacctgttcgacc 23
             ||||||||||||||||||||||
Sbjct: 76175 catgcccaccacctgttcgacc 76154

to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  228 bits (115), Expect = 1e-56
 Identities = 217/251 (86%)
 Strand = Plus / Minus

                                                                            
Query: 275      gggaggggaaagaaggaccaacagacggtgttcgtcgcgggcgccacggggcagacgggt 334
                |||||||| | ||||||||  ||||| ||||||||||||||||||||||||||| |||| 
Sbjct: 12705610 gggagggggaggaaggacccgcagacagtgttcgtcgcgggcgccacggggcaggcggga 12705551

                                                                            
Query: 335      gtccgcattgcacagacgctgctgcggcaaggtttcgccgtgcgcgccggggttccagac 394
                || ||||| || ||||||||||||||||| || |||||||||||||||||||| || |||
Sbjct: 12705550 gttcgcatcgcgcagacgctgctgcggcaggggttcgccgtgcgcgccggggtgccggac 12705491

                                                                            
Query: 395      ctcgagtcggcgcaggagttggcccggcttgccgccgcgtacagactcatttcacccgcg 454
                |||| ||| || |||||| |||| ||||| ||| |||||||| | |||||||| ||| | 
Sbjct: 12705490 ctcgcgtccgcccaggagctggcgcggctcgcctccgcgtaccggctcatttcccccacc 12705431

                                                                            
Query: 455      gaggcacgccggctcaacgcggtgaagtcggatttcgatgacactgaggcgattgccaag 514
                ||||| ||||| |||||||||||| |||| |||||||| ||| | |||||||| ||||||
Sbjct: 12705430 gaggcgcgccgactcaacgcggtggagtccgatttcgaggaccccgaggcgatcgccaag 12705371

                           
Query: 515      tccatcggccc 525
                |||||||||||
Sbjct: 12705370 tccatcggccc 12705360



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                             
Query: 47       gccatgccgcccgcgctcacctccaaccccccttccttccgcccc 91
                |||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct: 12705853 gccatgcctcccgccctcacctccaaccccccctccttccgcccc 12705809



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 2        catgcccaccacctgttcgacc 23
                ||||||||||||||||||||||
Sbjct: 12705888 catgcccaccacctgttcgacc 12705867

to top

>dbj|AK108453.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-C11, full
           insert sequence
          Length = 1318

 Score =  228 bits (115), Expect = 1e-56
 Identities = 217/251 (86%)
 Strand = Plus / Plus

                                                                       
Query: 275 gggaggggaaagaaggaccaacagacggtgttcgtcgcgggcgccacggggcagacgggt 334
           |||||||| | ||||||||  ||||| ||||||||||||||||||||||||||| |||| 
Sbjct: 354 gggagggggaggaaggacccgcagacagtgttcgtcgcgggcgccacggggcaggcggga 413

                                                                       
Query: 335 gtccgcattgcacagacgctgctgcggcaaggtttcgccgtgcgcgccggggttccagac 394
           || ||||| || ||||||||||||||||| || |||||||||||||||||||| || |||
Sbjct: 414 gttcgcatcgcgcagacgctgctgcggcaggggttcgccgtgcgcgccggggtgccggac 473

                                                                       
Query: 395 ctcgagtcggcgcaggagttggcccggcttgccgccgcgtacagactcatttcacccgcg 454
           |||| ||| || |||||| |||| ||||| ||| |||||||| | |||||||| ||| | 
Sbjct: 474 ctcgcgtccgcccaggagctggcgcggctcgcctccgcgtaccggctcatttcccccacc 533

                                                                       
Query: 455 gaggcacgccggctcaacgcggtgaagtcggatttcgatgacactgaggcgattgccaag 514
           ||||| ||||| |||||||||||| |||| |||||||| ||| | |||||||| ||||||
Sbjct: 534 gaggcgcgccgactcaacgcggtggagtccgatttcgaggaccccgaggcgatcgccaag 593

                      
Query: 515 tccatcggccc 525
           |||||||||||
Sbjct: 594 tccatcggccc 604



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                        
Query: 47  gccatgccgcccgcgctcacctccaaccccccttccttccgcccc 91
           |||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct: 111 gccatgcctcccgccctcacctccaaccccccctccttccgcccc 155



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  catgcccaccacctgttcgacc 23
          ||||||||||||||||||||||
Sbjct: 76 catgcccaccacctgttcgacc 97

to top

>dbj|AK099865.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111D24, full
           insert sequence
          Length = 1619

 Score =  228 bits (115), Expect = 1e-56
 Identities = 217/251 (86%)
 Strand = Plus / Plus

                                                                       
Query: 275 gggaggggaaagaaggaccaacagacggtgttcgtcgcgggcgccacggggcagacgggt 334
           |||||||| | ||||||||  ||||| ||||||||||||||||||||||||||| |||| 
Sbjct: 258 gggagggggaggaaggacccgcagacagtgttcgtcgcgggcgccacggggcaggcggga 317

                                                                       
Query: 335 gtccgcattgcacagacgctgctgcggcaaggtttcgccgtgcgcgccggggttccagac 394
           || ||||| || ||||||||||||||||| || |||||||||||||||||||| || |||
Sbjct: 318 gttcgcatcgcgcagacgctgctgcggcaggggttcgccgtgcgcgccggggtgccggac 377

                                                                       
Query: 395 ctcgagtcggcgcaggagttggcccggcttgccgccgcgtacagactcatttcacccgcg 454
           |||| ||| || |||||| |||| ||||| ||| |||||||| | |||||||| ||| | 
Sbjct: 378 ctcgcgtccgcccaggagctggcgcggctcgcctccgcgtaccggctcatttcccccacc 437

                                                                       
Query: 455 gaggcacgccggctcaacgcggtgaagtcggatttcgatgacactgaggcgattgccaag 514
           ||||| ||||| |||||||||||| |||| |||||||| ||| | |||||||| ||||||
Sbjct: 438 gaggcgcgccgactcaacgcggtggagtccgatttcgaggaccccgaggcgatcgccaag 497

                      
Query: 515 tccatcggccc 525
           |||||||||||
Sbjct: 498 tccatcggccc 508



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                       
Query: 47 gccatgccgcccgcgctcacctccaaccccccttccttccgcccc 91
          |||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct: 15 gccatgcctcccgccctcacctccaaccccccctccttccgcccc 59

to top

>dbj|AK073234.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024F08, full
           insert sequence
          Length = 1715

 Score =  228 bits (115), Expect = 1e-56
 Identities = 217/251 (86%)
 Strand = Plus / Plus

                                                                       
Query: 275 gggaggggaaagaaggaccaacagacggtgttcgtcgcgggcgccacggggcagacgggt 334
           |||||||| | ||||||||  ||||| ||||||||||||||||||||||||||| |||| 
Sbjct: 270 gggagggggaggaaggacccgcagacagtgttcgtcgcgggcgccacggggcaggcggga 329

                                                                       
Query: 335 gtccgcattgcacagacgctgctgcggcaaggtttcgccgtgcgcgccggggttccagac 394
           || ||||| || ||||||||||||||||| || |||||||||||||||||||| || |||
Sbjct: 330 gttcgcatcgcgcagacgctgctgcggcaggggttcgccgtgcgcgccggggtgccggac 389

                                                                       
Query: 395 ctcgagtcggcgcaggagttggcccggcttgccgccgcgtacagactcatttcacccgcg 454
           |||| ||| || |||||| |||| ||||| ||| |||||||| | |||||||| ||| | 
Sbjct: 390 ctcgcgtccgcccaggagctggcgcggctcgcctccgcgtaccggctcatttcccccacc 449

                                                                       
Query: 455 gaggcacgccggctcaacgcggtgaagtcggatttcgatgacactgaggcgattgccaag 514
           ||||| ||||| |||||||||||| |||| |||||||| ||| | |||||||| ||||||
Sbjct: 450 gaggcgcgccgactcaacgcggtggagtccgatttcgaggaccccgaggcgatcgccaag 509

                      
Query: 515 tccatcggccc 525
           |||||||||||
Sbjct: 510 tccatcggccc 520



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                       
Query: 47 gccatgccgcccgcgctcacctccaaccccccttccttccgcccc 91
          |||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct: 27 gccatgcctcccgccctcacctccaaccccccctccttccgcccc 71

to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                              
Query: 111      gccgcgccccatcctttctctgccgcgtcg 140
                |||||||||| |||||||||||||||||||
Sbjct: 42496885 gccgcgcccc-tcctttctctgccgcgtcg 42496913

to top

>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0458E05
          Length = 193577

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                           
Query: 111   gccgcgccccatcctttctctgccgcgtcg 140
             |||||||||| |||||||||||||||||||
Sbjct: 17768 gccgcgcccc-tcctttctctgccgcgtcg 17796

to top

>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0483G10
          Length = 190721

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                            
Query: 111    gccgcgccccatcctttctctgccgcgtcg 140
              |||||||||| |||||||||||||||||||
Sbjct: 156223 gccgcgcccc-tcctttctctgccgcgtcg 156251

to top

>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 172     caagaagaatcccttctttgc 192
               |||||||||||||||||||||
Sbjct: 2508257 caagaagaatcccttctttgc 2508277

to top

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 133     ccgcgtcggcggcggcaagcc 153
               |||||||||||||||||||||
Sbjct: 2024988 ccgcgtcggcggcggcaagcc 2025008



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 308    gtcgcgggcgccacggggcagacg 331
              |||||||||||||||| |||||||
Sbjct: 240949 gtcgcgggcgccacggcgcagacg 240972

to top

>gb|BC014091.2| Homo sapiens family with sequence similarity 109, member A, mRNA
            (cDNA clone IMAGE:4328993), complete cds
          Length = 1452

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 263  ctgtttgctggtgggagggga 283
            |||||||||||||||||||||
Sbjct: 1334 ctgtttgctggtgggagggga 1354

to top

>gb|BC034809.1| Homo sapiens family with sequence similarity 109, member A, mRNA
            (cDNA clone MGC:34643 IMAGE:4943538), complete cds
          Length = 3054

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 263  ctgtttgctggtgggagggga 283
            |||||||||||||||||||||
Sbjct: 2516 ctgtttgctggtgggagggga 2536

to top

>dbj|AK056918.1| Homo sapiens cDNA FLJ32356 fis, clone PROST2007974, weakly similar to
            ANTER-SPECIFIC PROLINE-RICH PROTEIN APG
          Length = 2524

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 263  ctgtttgctggtgggagggga 283
            |||||||||||||||||||||
Sbjct: 2001 ctgtttgctggtgggagggga 2021

to top

>dbj|AB168244.1| Macaca fascicularis testis cDNA clone: QtsA-10706, similar to human
            hypothetical protein FLJ32356 (FLJ32356), mRNA, RefSeq:
            NM_144671.2
          Length = 5582

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 263  ctgtttgctggtgggagggga 283
            |||||||||||||||||||||
Sbjct: 5021 ctgtttgctggtgggagggga 5041

to top

>gb|BC018996.2| Homo sapiens family with sequence similarity 109, member A, mRNA
            (cDNA clone IMAGE:4300218)
          Length = 1452

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 263  ctgtttgctggtgggagggga 283
            |||||||||||||||||||||
Sbjct: 1334 ctgtttgctggtgggagggga 1354

to top

>ref|NM_144671.2| Homo sapiens family with sequence similarity 109, member A (FAM109A),
            mRNA
          Length = 3054

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 263  ctgtttgctggtgggagggga 283
            |||||||||||||||||||||
Sbjct: 2516 ctgtttgctggtgggagggga 2536

to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 2        catgcccaccacctgttcgac 22
                |||||||||||||||||||||
Sbjct: 19916948 catgcccaccacctgttcgac 19916928

to top

>gb|AC005805.12| Homo sapiens 12 PAC RP3-473L9 (Roswell Park Cancer Institute Human PAC
             Library) complete sequence
          Length = 113064

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 263   ctgtttgctggtgggagggga 283
             |||||||||||||||||||||
Sbjct: 54388 ctgtttgctggtgggagggga 54368

to top

>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0036M16
          Length = 158880

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 2     catgcccaccacctgttcgac 22
             |||||||||||||||||||||
Sbjct: 81598 catgcccaccacctgttcgac 81578

to top

>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 2       catgcccaccacctgttcga 21
               ||||||||||||||||||||
Sbjct: 3756754 catgcccaccacctgttcga 3756773

to top

>gb|AC164648.3| Mus musculus BAC clone RP23-434H4 from chromosome 18, complete sequence
          Length = 198430

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   tgaggaggccaagaagaatc 182
             ||||||||||||||||||||
Sbjct: 30873 tgaggaggccaagaagaatc 30892

to top

>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 318    ccacggggcagacgggtgtc 337
              ||||||||||||||||||||
Sbjct: 232707 ccacggggcagacgggtgtc 232726

to top

>ref|NM_181682.1| Mus musculus desmoglein 1 beta (Dsg1b), mRNA
          Length = 3404

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 163  tgaggaggccaagaagaatc 182
            ||||||||||||||||||||
Sbjct: 2502 tgaggaggccaagaagaatc 2483

to top

>gb|AC102410.5| Mus musculus chromosome 18, clone RP24-369O1, complete sequence
          Length = 164142

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   tgaggaggccaagaagaatc 182
             ||||||||||||||||||||
Sbjct: 37307 tgaggaggccaagaagaatc 37288

to top

>gb|AC145970.2| Pan troglodytes BAC clone RP43-17L12 from 7, complete sequence
          Length = 182677

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 237   ccttcccctcgccgggaacaggct 260
             |||||||||||||||| |||||||
Sbjct: 59721 ccttcccctcgccggggacaggct 59744

to top

>gb|AC125205.4| Mus musculus BAC clone RP23-238I2 from 14, complete sequence
          Length = 205957

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 275   gggaggggaaagaaggaccaacag 298
             ||||||||||||| ||||||||||
Sbjct: 51113 gggaggggaaagagggaccaacag 51136

to top

>emb|Z98752.16|HS138B7 Human DNA sequence from clone RP1-138B7 on chromosome 20q13.12 Contains
             the 3' end of the L3MBTL gene for l(3)mbt-like
             (Drosophila), the SGK2 gene for serum/glucocorticoid
             regulated kinase 2, the 5' end of the C20orf9 gene (NGD5,
             CGI-53), an HSPC194 pseudogene and a CpG island, complete
             sequence
          Length = 84323

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   ggtgggaggggaaagaagga 291
             ||||||||||||||||||||
Sbjct: 33972 ggtgggaggggaaagaagga 33991

to top

>emb|AL390754.18| Human DNA sequence from clone RP11-17E4 on chromosome 13 Contains
            part of the ARHGEF7 gene forRho guanine nucleotide
            exchange factor (GEF) 7 (KIAA0142) and a CpG island,
            complete sequence
          Length = 78835

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 52   gccgcccgcgctcacctcca 71
            ||||||||||||||||||||
Sbjct: 1442 gccgcccgcgctcacctcca 1423

to top

>emb|AL353704.10| Human DNA sequence from clone RP11-551M15 on chromosome 13 Contains three
              novel genes, the 5' end of the ARHGEF7 gene for Rho guanine
              nucleotide exchange factor (GEF) 7 (KIAA0142) and three CpG
              islands, complete sequence
          Length = 117417

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     gccgcccgcgctcacctcca 71
              ||||||||||||||||||||
Sbjct: 116859 gccgcccgcgctcacctcca 116840

to top

>gb|AY315940.1| Mus musculus desmoglein 1beta (Dsg1b) mRNA, complete cds
          Length = 3183

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 163  tgaggaggccaagaagaatc 182
            ||||||||||||||||||||
Sbjct: 2402 tgaggaggccaagaagaatc 2383

to top

>gb|AC157798.5| Mus musculus chromosome 1, clone RP24-153N24, complete sequence
          Length = 163087

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   ggggccgatgaggaggccaa 174
             ||||||||||||||||||||
Sbjct: 62572 ggggccgatgaggaggccaa 62553

to top

>gb|AY192158.1| Mus musculus desmoglein 5 (Dsg5) mRNA, complete cds
          Length = 3404

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 163  tgaggaggccaagaagaatc 182
            ||||||||||||||||||||
Sbjct: 2502 tgaggaggccaagaagaatc 2483

to top

>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 423     ttgccgccgcgtacagactc 442
               ||||||||||||||||||||
Sbjct: 3733986 ttgccgccgcgtacagactc 3733967

to top

>gb|AC012516.15| Homo sapiens 3 BAC RP11-99A5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 79175

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    gccgcccgcgctcacctcca 71
             ||||||||||||||||||||
Sbjct: 78618 gccgcccgcgctcacctcca 78599

to top

>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 379     cgccggggttccagacctcg 398
               ||||||||||||||||||||
Sbjct: 1987601 cgccggggttccagacctcg 1987620

to top

>dbj|AK081473.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130019N03 product:histocompatibility 2, M
            region locus 2, full insert sequence
          Length = 1835

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 155  ggggccgatgaggaggccaa 174
            ||||||||||||||||||||
Sbjct: 1471 ggggccgatgaggaggccaa 1490

to top

>dbj|AK016043.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930545C20 product:hypothetical Cadherin
           cytoplasmic region containing protein, full insert
           sequence
          Length = 1091

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 tgaggaggccaagaagaatc 182
           ||||||||||||||||||||
Sbjct: 713 tgaggaggccaagaagaatc 694

to top

>dbj|AK036986.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
            library, clone:9930033D10 product:DESMOGLEIN 1
            (DESMOSOMAL GLYCOPROTEIN I) (DG1) (DGI) (FRAGMENT)
            homolog [Mus musculus], full insert sequence
          Length = 3966

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 163  tgaggaggccaagaagaatc 182
            ||||||||||||||||||||
Sbjct: 2610 tgaggaggccaagaagaatc 2591

to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 4        tgcccaccacctgttcgacc 23
                ||||||||||||||||||||
Sbjct: 22406750 tgcccaccacctgttcgacc 22406769

to top

>gb|AC091633.22| Homo sapiens 3 BAC RP11-506F8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 153896

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    cccccttccttccgcccctt 93
             ||||||||||||||||||||
Sbjct: 29770 cccccttccttccgcccctt 29751

to top

>gb|AC007685.2|AC007685 Homo sapiens BAC clone RP11-558O12 from Y, complete sequence
          Length = 178377

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 272    ggtgggaggggaaagaagga 291
              ||||||||||||||||||||
Sbjct: 163199 ggtgggaggggaaagaagga 163180

to top

>gb|AF157641.2|AF157641 Desulfitobacterium dehalogenans Hrd6-1 (hrd6-1) gene, partial cds;
            and putative Ni/Fe hydrogenase small subunit precursor
            (hydA), putative Ni/Fe hydrogenase large subunit
            precursor (hydB), putative Ni/Fe hydrogenase B-type
            cytochrome subunit (hydC), and putative Ni/Fe hydrogenase
            processing protein (hydD) genes, complete cds
          Length = 4883

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 43   gcccgccatgccgcccgcgc 62
            ||||||||||||||||||||
Sbjct: 3196 gcccgccatgccgcccgcgc 3215

to top

>emb|AJ538734.1|NTA538734 Nicotiana tabacum cDNA-AFLP-fragment BC4-M43-005
          Length = 442

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 332 ggtgtccgcattgcacagac 351
           ||||||||||||||||||||
Sbjct: 29  ggtgtccgcattgcacagac 48

to top

>dbj|AP005546.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1003_C09
          Length = 124746

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     tgcccaccacctgttcgacc 23
             ||||||||||||||||||||
Sbjct: 43239 tgcccaccacctgttcgacc 43258

to top

>dbj|AK108627.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-E04, full
            insert sequence
          Length = 1807

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 4    tgcccaccacctgttcgacc 23
            ||||||||||||||||||||
Sbjct: 1250 tgcccaccacctgttcgacc 1231

to top

>dbj|AK071860.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023117I03, full
           insert sequence
          Length = 1644

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 4   tgcccaccacctgttcgacc 23
           ||||||||||||||||||||
Sbjct: 310 tgcccaccacctgttcgacc 329

to top

>gb|AF027770.1|AF027770 Mycobacterium smegmatis FxbA (fxbA) gene, partial cds; FxbB (fxbB),
             FxbC (fxbC), and FxuD (fxtD) genes, complete cds; and
             unknown genes
          Length = 30683

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     atgcccaccacctgttcgac 22
             ||||||||||||||||||||
Sbjct: 12906 atgcccaccacctgttcgac 12925

to top

>gb|AF034152.1|AF034152 Mycobacterium smegmatis exochelin gene cluster, ExiT (exiT) and FxbB
             (fxbB) genes, complete cds; and FxbC (fxbC) gene, partial
             cds
          Length = 15223

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     atgcccaccacctgttcgac 22
             ||||||||||||||||||||
Sbjct: 12468 atgcccaccacctgttcgac 12487

to top

>emb|AL626784.11| Mouse DNA sequence from clone RP23-392J14 on chromosome 4, complete
              sequence
          Length = 211585

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    gctggtgggaggggaaagaa 288
              ||||||||||||||||||||
Sbjct: 156196 gctggtgggaggggaaagaa 156215


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,574,284
Number of Sequences: 3902068
Number of extensions: 3574284
Number of successful extensions: 76432
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 75667
Number of HSP's gapped (non-prelim): 768
length of query: 525
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 502
effective length of database: 17,143,297,704
effective search space: 8605935447408
effective search space used: 8605935447408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result