ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bah63d06 |
|---|---|
| Clone Library Name | barley_pub |
>Y2594_STRCO (Q9L1I2) Exopolysaccharide phosphotransferase SCO2594 (EC 2.7.-.-)| (Stealth protein SCO2594) Length = 602 Score = 36.2 bits (82), Expect = 0.074 Identities = 21/49 (42%), Positives = 26/49 (53%) Frame = -2 Query: 196 DLDFGSGAPAGGARTSSWMTRPTAAVGTCSRRWCPASFLFLEVLGPEPS 50 DLD G GA AGG R TRP A G+ RR P ++ V G +P+ Sbjct: 256 DLDAGDGA-AGGPRPGLVRTRPAFAAGSVGRRTFPIDVVYTWVDGSDPA 303
>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)| Length = 3925 Score = 35.8 bits (81), Expect = 0.097 Identities = 25/78 (32%), Positives = 32/78 (41%) Frame = +3 Query: 6 ARGASRLRRPRXTKADGSGPNTSKKRKLAGHQRREQVPTAAVGLVIHEEVLAPPAGAPDP 185 A G L +P KA G+G S+ G R E +PT + AGAP P Sbjct: 2275 AEGPVYLGKPAAAKAPGAG-GPSRPEMPVGAAREEPLPTTTPAAI------KEAAGAPAP 2327 Query: 186 KSRSTDKPPAGGEVDGGA 239 + KPPA GG+ Sbjct: 2328 APLAGQKPPADAAPGGGS 2345
>RFIP3_HUMAN (O75154) Rab11 family-interacting protein 3 (Rab11-FIP3) (EF| hands-containing Rab-interacting protein) (Eferin) Length = 756 Score = 34.3 bits (77), Expect = 0.28 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = +3 Query: 156 LAPPAGAPDPKSRSTDKPPAGGEVDGGA 239 L P G PDP+S D+P G DGGA Sbjct: 41 LGAPVGGPDPQSPGLDEPAPGAAADGGA 68
>AROC_BORPE (Q7VY92) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 353 Score = 34.3 bits (77), Expect = 0.28 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -2 Query: 187 FGSGAPAGGARTSSWMTRPTAAVGTCSRRWCPASF 83 +G P GG R+S+ +T PT A G +++W + F Sbjct: 115 YGVRDPRGGGRSSARLTAPTVAAGAIAKKWLASQF 149
>AROC_BORPA (Q7W950) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 353 Score = 33.9 bits (76), Expect = 0.37 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -2 Query: 187 FGSGAPAGGARTSSWMTRPTAAVGTCSRRWCPASF 83 +G P GG R+S+ +T PT A G +++W F Sbjct: 115 YGVRDPRGGGRSSARLTAPTVAAGAIAKKWLAGQF 149
>AROC_BORBR (Q7WKJ5) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 353 Score = 33.9 bits (76), Expect = 0.37 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -2 Query: 187 FGSGAPAGGARTSSWMTRPTAAVGTCSRRWCPASF 83 +G P GG R+S+ +T PT A G +++W F Sbjct: 115 YGVRDPRGGGRSSARLTAPTVAAGAIAKKWLAGQF 149
>YEHM_ECOLI (P33349) Hypothetical protein yehM| Length = 759 Score = 33.1 bits (74), Expect = 0.63 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 8/78 (10%) Frame = +3 Query: 348 VWRSAPLNLDYREFPS------GC-LPPYNDTRIAVISHILSSHPGP-GRRFCIEPRFLR 503 +WR P ++ E PS GC L PY++ R+ V++ LS P P + +C + + Sbjct: 209 MWRECPQKINKPELPSLADAVTGCYLTPYSEKRLDVLAGYLSGMPAPVWQNWCWQWGLQK 268 Query: 504 AAEATLDAWLRSAALDKL 557 A E L L KL Sbjct: 269 AGEQLLKTILTRLRQHKL 286
>CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displacement protein)| (CDP) Length = 1505 Score = 32.7 bits (73), Expect = 0.82 Identities = 20/61 (32%), Positives = 29/61 (47%) Frame = +3 Query: 51 DGSGPNTSKKRKLAGHQRREQVPTAAVGLVIHEEVLAPPAGAPDPKSRSTDKPPAGGEVD 230 +G G +++ K G RE+VP A E+ PP+G P P + D GG V+ Sbjct: 1345 EGPGSADTEEPKSQGEAEREEVPRPA------EQTEPPPSGTPGPDD-ARDDDHEGGPVE 1397 Query: 231 G 233 G Sbjct: 1398 G 1398
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 32.3 bits (72), Expect = 1.1 Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Frame = +3 Query: 6 ARGASRLRRPRXTKADGSGPNTSKKRKLAGHQRREQVPTAAVGLVIHEEVLAP---PAGA 176 A G L +P TKA G+G + AG R E T A VI E +AP PA A Sbjct: 2279 AEGPVYLGKPAATKASGAG-GPPRPELPAGVAREEPFSTTAPA-VIKEAPVAPAPGPAPA 2336 Query: 177 PDPKSRSTDKPPAG 218 P P + + AG Sbjct: 2337 PPPGQKPAGEAAAG 2350
>ZFHX2_HUMAN (Q9C0A1) Zinc finger homeobox protein 2| Length = 1427 Score = 31.6 bits (70), Expect = 1.8 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Frame = +3 Query: 114 VPTAAVGLVIHEEVLAPPAGAPDPKSRSTDKP---PAGGEVDGGAVDRI 251 +P +GL + +L PP P+P + + KP PA GE + G VD + Sbjct: 1243 IPQTLIGL-LPNALLQPPPQPPEPTATAPPKPPELPAPGEGEAGEVDEL 1290
>FIP1_RAT (Q5U317) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)| Length = 536 Score = 31.6 bits (70), Expect = 1.8 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 4/43 (9%) Frame = +2 Query: 446 PFLPP----GARPPLLHRTALPPRRGSYPRRLAPVRRSGQIAG 562 PFLPP PPL+ PP G+ P L P SG +G Sbjct: 313 PFLPPPPTVSTAPPLIPPPGFPPPPGAPPPSLIPTIESGHSSG 355
>FIP1_HUMAN (Q6UN15) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)| (Factor interacting with PAP) (hFip1) (Rearranged in hypereosinophilia) Length = 594 Score = 31.6 bits (70), Expect = 1.8 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 4/43 (9%) Frame = +2 Query: 446 PFLPP----GARPPLLHRTALPPRRGSYPRRLAPVRRSGQIAG 562 PFLPP PPL+ PP G+ P L P SG +G Sbjct: 373 PFLPPPPTVSTAPPLIPPPGFPPPPGAPPPSLIPTIESGHSSG 415
>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor| Length = 1783 Score = 31.2 bits (69), Expect = 2.4 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Frame = +3 Query: 36 RXTKADGSGPNTSKKRKLAGHQRREQVPTAAVGLVIHEEVLAPPAGAPDP--KSRSTDKP 209 R + G GP + R A H RR+ +AA + AP GA P +++T + Sbjct: 102 RAGDSGGQGPAAAGGRGQARHGRRQAAASAATTV-----SAAPQTGATKPAATAKTTPQR 156 Query: 210 PAGGEVDGGA 239 P G + D G+ Sbjct: 157 PRGSDADAGS 166
>AROC_RALSO (Q8XZ40) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 366 Score = 31.2 bits (69), Expect = 2.4 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -2 Query: 187 FGSGAPAGGARTSSWMTRPTAAVGTCSRRWCPASF 83 +G P GG R+S+ +T P A G +++W F Sbjct: 115 YGIRDPRGGGRSSARLTAPVVAAGAVAKKWLREKF 149
>BCSC2_ACEXY (O82861) Cellulose synthase operon protein C precursor| Length = 1326 Score = 31.2 bits (69), Expect = 2.4 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Frame = +3 Query: 45 KADGSGPNTSKKRKLAGHQRREQVP--TAAVGLV-IHEEVLAPPAGAPDPKSRSTDKPPA 215 +ADG G T + + A R +QV AA G V HEE LAPP+ P + Sbjct: 814 QADGHGQRTIEDLRRAYDLRLQQVEGTRAASGPVGAHEEALAPPSTNPFQSRGYGHQVEL 873 Query: 216 GGEVDGGA 239 G V GG+ Sbjct: 874 GAPVTGGS 881
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 30.4 bits (67), Expect = 4.1 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Frame = +3 Query: 45 KADGSGPNTSKKRKLAGHQRREQVPTAAVGLVIHEEVLAP---PAGAPDPKSRSTD-KPP 212 KAD + R HQ E AA+G +I++ P PA P P TD +PP Sbjct: 2191 KADAPEGLAPEDRDKPAHQASETELAAAIGSIINDISGEPENFPAPPPYPGESQTDLQPP 2250 Query: 213 AGGE 224 AG + Sbjct: 2251 AGAQ 2254
>UL16_HHV11 (P10200) Protein UL16| Length = 373 Score = 30.0 bits (66), Expect = 5.3 Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Frame = +3 Query: 162 PPAGAPDPKSRSTDKPPAGGEVDGGAVDRISNLHDDNLRHIVSLLPVKDGARTQILASRW 341 PP PDP + + P GE+DG + + + P + GA + W Sbjct: 154 PPEETPDPTTEQLAEEPVVGELDGAYL-------------VPAKTPPEPGACCALGPGAW 200 Query: 342 RHVWRSAPLNLDY-----REFPSGCLPPYNDTRIAVISHILSSHPGPGRRFCIEPRFLRA 506 H+ P Y + S C P + + +++HPG G C P + + Sbjct: 201 WHL----PSGQIYCWAMDSDLGSLCPPGSRARHLGWLLARITNHPG-GCESCAPPPHIDS 255 Query: 507 AEATLDAWLRSAALD 551 A A WL S + Sbjct: 256 ANA---LWLSSVVTE 267
>DCP1B_HUMAN (Q8IZD4) mRNA decapping enzyme 1B (EC 3.-.-.-)| Length = 618 Score = 30.0 bits (66), Expect = 5.3 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 11/85 (12%) Frame = +3 Query: 3 SARGASRLRRPRXTKADGSG----------PNTSKKRKLAGHQRREQVP-TAAVGLVIHE 149 S R A + P ++ G+G PNT ++ L +++P TAA L++ Sbjct: 469 SNRPALAAKFPVLAQSSGTGKPLESWINKTPNTEQQTPLFQVISPQRIPATAAPSLLMSP 528 Query: 150 EVLAPPAGAPDPKSRSTDKPPAGGE 224 V A P P PK R + P GG+ Sbjct: 529 MVFAQPTSVP-PKERESGLLPVGGQ 552
>APLP_MANSE (Q25490) Apolipophorins precursor [Contains: Apolipophorin-2| (Apolipophorin II) (apoLp-2); Apolipophorin-1 (Apolipophorin I) (apoLp-1)] Length = 3305 Score = 30.0 bits (66), Expect = 5.3 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 6/93 (6%) Frame = +3 Query: 66 NTSKKRKLAGHQRREQVPTAAVGLVIHEEVLAPPAGAPDPKSRSTDKPPAGGEVDGGAVD 245 N K+ G + + L +H VL+ P G P + +KP DG Sbjct: 62 NQETSLKMLGQASVSAISNCELELSVHNMVLSGPDGKKYPCPQGIEKPVRFSYQDGRVGP 121 Query: 246 RISNLHDDNLRH------IVSLLPVKDGARTQI 326 I DD+ R I+SLL + Q+ Sbjct: 122 EICAAEDDSRRSLNIKRAIISLLQAEQKPSVQV 154
>MUTS_BURPS (Q63SR9) DNA mismatch repair protein mutS| Length = 890 Score = 30.0 bits (66), Expect = 5.3 Identities = 20/62 (32%), Positives = 28/62 (45%) Frame = +3 Query: 99 QRREQVPTAAVGLVIHEEVLAPPAGAPDPKSRSTDKPPAGGEVDGGAVDRISNLHDDNLR 278 +R ++ + A L E L PP G D +R+ PA DGG + R + D LR Sbjct: 399 ERVAEIASNAAALGRLEAALEPPPGCLDLLTRAIAAEPAAMVRDGGVIARGYDAELDELR 458 Query: 279 HI 284 I Sbjct: 459 DI 460
>MUTS_BURP1 (Q3JQS6) DNA mismatch repair protein mutS| Length = 890 Score = 30.0 bits (66), Expect = 5.3 Identities = 20/62 (32%), Positives = 28/62 (45%) Frame = +3 Query: 99 QRREQVPTAAVGLVIHEEVLAPPAGAPDPKSRSTDKPPAGGEVDGGAVDRISNLHDDNLR 278 +R ++ + A L E L PP G D +R+ PA DGG + R + D LR Sbjct: 399 ERVAEIASNAAALGRLEAALEPPPGCLDLLTRAIAAEPAAMVRDGGVIARGYDAELDELR 458 Query: 279 HI 284 I Sbjct: 459 DI 460
>MUTS_BURMA (Q62J26) DNA mismatch repair protein mutS| Length = 891 Score = 30.0 bits (66), Expect = 5.3 Identities = 20/62 (32%), Positives = 28/62 (45%) Frame = +3 Query: 99 QRREQVPTAAVGLVIHEEVLAPPAGAPDPKSRSTDKPPAGGEVDGGAVDRISNLHDDNLR 278 +R ++ + A L E L PP G D +R+ PA DGG + R + D LR Sbjct: 399 ERVAEIASNAAALGRLEAALEPPPGCLDLLTRAIAAEPAAMVRDGGVIARGYDAELDELR 458 Query: 279 HI 284 I Sbjct: 459 DI 460
>SPY1_HUMAN (O43609) Sprouty homolog 1 (Spry-1)| Length = 319 Score = 29.6 bits (65), Expect = 6.9 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +2 Query: 419 HPHCRHLAHPFLPPGARPPLLHRT 490 H H HL H LP AR P+L R+ Sbjct: 91 HRHTSHLGHAVLPSNARGPILSRS 114
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 29.6 bits (65), Expect = 6.9 Identities = 21/79 (26%), Positives = 31/79 (39%) Frame = +3 Query: 6 ARGASRLRRPRXTKADGSGPNTSKKRKLAGHQRREQVPTAAVGLVIHEEVLAPPAGAPDP 185 +R S+ R R +K+ S + S+ R + + R PP +P Sbjct: 156 SRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP----------------PPVSKREP 199 Query: 186 KSRSTDKPPAGGEVDGGAV 242 KSRS K P + GAV Sbjct: 200 KSRSRSKSPPESPEEEGAV 218
>NIFH_RHIET (P00462) Nitrogenase iron protein (EC 1.18.6.1) (Nitrogenase| component II) (Nitrogenase Fe protein) (Nitrogenase reductase) Length = 297 Score = 29.3 bits (64), Expect = 9.1 Identities = 12/19 (63%), Positives = 16/19 (84%) Frame = -1 Query: 578 RAGLKLLQFVQSGGPEPGV 522 +AG K ++ V+SGGPEPGV Sbjct: 79 KAGYKGIKCVESGGPEPGV 97
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 29.3 bits (64), Expect = 9.1 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = +3 Query: 117 PTAAVGLVIHEEVLAPPAGAPDPKSRSTDKPPAGGEVDGG 236 P A G H P +P P SR+T+ PP+ G G Sbjct: 2767 PAATTGTTQHS---TPALSSPHPSSRTTESPPSPGTTTPG 2803 Score = 29.3 bits (64), Expect = 9.1 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = +3 Query: 117 PTAAVGLVIHEEVLAPPAGAPDPKSRSTDKPPAGGEVDGG 236 P A G H P +P P SR+T+ PP+ G G Sbjct: 2238 PAATTGTTQHS---TPALSSPHPSSRTTESPPSPGTTTPG 2274 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,722,957 Number of Sequences: 219361 Number of extensions: 1549920 Number of successful extensions: 5803 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 5163 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5789 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
