>VE6_HPV43 (P19709) Protein E6|
          Length = 155

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 15/75 (20%)
 Frame = +1

Query: 343 KFIGMFLRWRHLGHALSSVTISRS----------ECCRCHGPLGSIRLLGGVVKPSRIAA 492
           +F G   ++RH  +A  + T+              CC+CH PL  +  +  +V+ ++   
Sbjct: 69  QFHGKISQYRHFDYAAYADTVEEETKQTVFDLCIRCCKCHKPLSPVEKVQHIVQKAQFFK 128

Query: 493 AH*LWL-----AWKS 522
            H +W       WKS
Sbjct: 129 IHSVWKGYCLHCWKS 143

>IF2_PROMM (Q7V5M4) Translation initiation factor IF-2|
          Length = 1125

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 23/62 (37%), Positives = 27/62 (43%)
 Frame = +3

Query: 33  PTQTPTSSAPKSHLQTWSCRRPVALLGRRRLNPSPPTAPEPSRVAAIAVPFLPRTFVSKP 212
           PT TPTSS PK      +  RP+     R   PS PTAP P      + P  P      P
Sbjct: 136 PTPTPTSSPPK------TAARPINAPISRPAIPSRPTAPTPRSANKPSSPVPPSAGGKDP 189

Query: 213 QA 218
           +A
Sbjct: 190 RA 191

>Y346_SYNY3 (Q55637) Hypothetical protein slr0346|
          Length = 244

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 423 SLPRASGFHQTAWRGSQTVEDSGSTLTLASLE----VQSKADYVKKERVPQSK 569
           +LP+ SGF  T W G Q +  SGS  +  S E     Q+  D++ KE +P  K
Sbjct: 191 NLPQQSGFQATVWLGDQPL-GSGSGSSKKSAEQAAAQQAYQDFIAKEILPMPK 242

>F100A_RAT (Q6AXN0) Protein FAM100A|
          Length = 176

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 111 GRRRLNPSPPT-APEPSRVAAIAVPFLPRTFVSKPQAHPALNLLR 242
           G + L P PP   P P    +   P  P+   S+P+AHPA+   R
Sbjct: 132 GPQHLQPQPPLWTPAPPSPTSDWPPLAPQQATSEPRAHPAMEAER 176

>F100A_HUMAN (Q8TB05) Protein FAM100A|
          Length = 177

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = +3

Query: 33  PTQTPTSSAPKSHLQTWSCRRPVALL---GRRRLNPSPPT-APEPSRVAAIAVPFLPRTF 200
           P   P ++   S   +W    P A     G +   P PP   P P   A+   P  P+  
Sbjct: 108 PPHFPHAATSSSAASSW----PTAASPPGGPQHHQPQPPLWTPTPPSPASDWPPLAPQQA 163

Query: 201 VSKPQAHPALNLLR 242
            S+P+AHPA+   R
Sbjct: 164 TSEPRAHPAMEAER 177

>BNI1_YEAST (P41832) Protein BNI1 (Synthetic lethal 39)|
          Length = 1953

 Score = 27.7 bits (60), Expect(2) = 4.2
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +3

Query: 129  PSPPTAPEPSRVAAIAVPFLPRT---FVSKPQAHPALNLLRYKVLE 257
            P+PP  P     +A+  P LP++   F   P+ H  L  L ++ L+
Sbjct: 1322 PAPPMMPASQIKSAVTSPLLPQSPSLFEKYPRPHKKLKQLHWEKLD 1367



 Score = 21.2 bits (43), Expect(2) = 4.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 7    SPAQPPCSDLPKPQPVRL 60
            SPA PP    P P P+ L
Sbjct: 1277 SPAPPPPPPPPPPPPMAL 1294

>CCD13_HUMAN (Q8IYE1) Coiled-coil domain-containing protein 13|
          Length = 715

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 23/89 (25%), Positives = 44/89 (49%)
 Frame = +3

Query: 366 LASSRSCFVIGDHLPFRMLSLPRASGFHQTAWRGSQTVEDSGSTLTLASLEVQSKADYVK 545
           L SSRS   +G  L    L+ P     H+T+ R S + E  G    ++ ++   +A  V+
Sbjct: 500 LGSSRSVTSLGHTLVESALTRPSLPSPHRTSPRFSDSPEQKGWQAQVSEIKALWQAAEVE 559

Query: 546 KERVPQSKADYVKKERAPQSKADYVKKER 632
           ++R+ +     V ++R  +S +  ++ ER
Sbjct: 560 RDRLTEFVT--VLQKRVEESNSKLLESER 586

>KLF15_MOUSE (Q9EPW2) Krueppel-like factor 15 (Cardiovascular Kruppel-like|
           factor)
          Length = 415

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 93  RPVALLGRRRLNP-SPPTAPEPSRVAAIAVPFLPRTFVSKPQAHPALNL 236
           +PVA+       P SP  APE  +VA + V    +TF   PQ  P+ NL
Sbjct: 223 QPVAVKQEAGTGPASPGQAPESVKVAQLLVNIQGQTFALLPQVVPSSNL 271

>CLC14_HUMAN (Q86T13) C-type lectin domain family 14 member A precursor|
           (Epidermal growth factor receptor 5) (EGFR-5)
          Length = 490

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 241 LSKFRAGCACGLETNVRGRKGTAMAATREGSGAVGGEGLRRRRP 110
           L  F   CA G E    G+ G +   + EG   +GG G+  RRP
Sbjct: 266 LGGFACECATGFEL---GKDGRSCVTSGEGQPTLGGTGVPTRRP 306

>H11_VOLCA (Q08864) Histone H1-I|
          Length = 260

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +3

Query: 462 RGSQTVEDSGSTLTLASLEVQSKAD---YVKKERVPQSKADYVKKERAPQSKADYVKKER 632
           +GS  + ++       S   ++KAD     KK      KA+ VKK +AP+ K +  KKE+
Sbjct: 121 KGSFKLSEALKAKAKKSTPKKAKADGEAKPKKSEAKPKKAEAVKKTKAPKEKVERPKKEK 180

>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 129 PSPPTAPEPSRVAAIAVPFLPR-TFVSKPQAHPA 227
           PSPP AP P+  AA   P  P    +++P  HPA
Sbjct: 255 PSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPA 288

>HKR1_YEAST (P41809) Hansenula MRAKII killer toxin-resistant protein 1|
           precursor
          Length = 1802

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 36  TQTPTSSAPKSHLQTWSCRRPVALLGRRRLNPSPPTAPEPSRVAAIAVPF-LPRTFVSKP 212
           T +P++ A  S   T S   PVA+      +PS P A   +  ++ +VP  +  T+ S P
Sbjct: 603 TSSPSAPAAISSTYTSSPSAPVAVSSTYTSSPSAPAAISSTYTSSPSVPVAVSSTYTSSP 662

Query: 213 QAHPALN 233
            A  A++
Sbjct: 663 SAPAAIS 669



 Score = 29.6 bits (65), Expect = 7.9
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 36  TQTPTSSAPKSHLQTWSCRRPVALLGRRRLNPSPPTAPEPSRVAAIAVPF-LPRTFVSKP 212
           T +P++ A  S   T S   PVA+      +PS P A   +  ++ +VP  +  T+ S P
Sbjct: 547 TSSPSAPAAISSTYTSSPSAPVAVSSTYTSSPSAPVAISSTYTSSPSVPVAVSSTYTSSP 606

Query: 213 QAHPALN 233
            A  A++
Sbjct: 607 SAPAAIS 613

>FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger protein multitype|
           1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 1004

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 15  AAPLL*PTQTPTSSAPKSHLQTWSCRRPVALLGRRRLN-PSPPTAPEPSRVAAIAVPFLP 191
           AAP+L P +      P++  +T S R P     +  L+ P+P ++P P  +      FLP
Sbjct: 470 AAPILGPGEP----GPQAPSRTPSPRSPAPARVKAELSSPTPGSSPVPGELGLAGALFLP 525

Query: 192 RTFVSKPQAHPALNLL 239
           +       A PA  +L
Sbjct: 526 QYVFGPDAAPPASEIL 541

>AXUD1_HUMAN (Q96S65) Axin-1 up-regulated gene 1 protein (TGF-beta-induced|
           apoptosis protein 3) (TAIP-3) (URAX1 protein)
          Length = 589

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 28/107 (26%), Positives = 38/107 (35%)
 Frame = -3

Query: 436 ARGSDSILNGRWSPMTKHDRDDASARTFR*TCPMISLIYAITEQCQTQHLSSITVVMFQL 257
           +R  DS   G W  M   DRD    R+F    P+  L  A  E+        ITV  F  
Sbjct: 40  SRAWDSEEEGPWDQMPLPDRDFCGPRSF---TPLSILKRARRERPGRVAFDGITVFYFPR 96

Query: 256 SSTLYLSKFRAGCACGLETNVRGRKGTAMAATREGSGAVGGEGLRRR 116
                    R GC  G+       +  ++A   +       E LR+R
Sbjct: 97  CQGFTSVPSRGGCTLGMALRHSACRRFSLAEFAQEQARARHEKLRQR 143


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,314,219
Number of Sequences: 219361
Number of extensions: 1821877
Number of successful extensions: 6684
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6661
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)