ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bah62o03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479732.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1909 Score = 297 bits (150), Expect = 2e-77 Identities = 222/246 (90%) Strand = Plus / Plus Query: 361 ttcaaggccttcgtccacccgccccaactcgcgcactccatgaccgacgaggagctcttc 420 |||||| | |||||||||||||| || ||||||||||||||| ||||| |||||||||| Sbjct: 594 ttcaagtcgttcgtccacccgccgcacctcgcgcactccatgtccgacccggagctcttc 653 Query: 421 tggcgcgccaccctcgtgccaaccgccgacgagttccccttccagcgcgtccccaaggtc 480 ||||||||| ||||||| || ||||||||| ||||||||||||||||||||||||||| Sbjct: 654 tggcgcgcctccctcgtccccgtcgccgacgacttccccttccagcgcgtccccaaggtc 713 Query: 481 gccttcctcttcatgacccgcggcccgctccccttcgcgcccctctgggagcgcttcttc 540 ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| Sbjct: 714 gccttcctcttcatgacgcgcggcccgctccccttcgcgccgctctgggaccgcttcttc 773 Query: 541 cggggacaccagggcctcttctccgtctacctccacaccataccggactacaagctcaac 600 || || ||||| ||||||| |||||||||| |||||||| | || ||||||||||||||| Sbjct: 774 cgcggccaccacggcctctactccgtctacgtccacaccctccccgactacaagctcaac 833 Query: 601 gtctcc 606 |||||| Sbjct: 834 gtctcc 839 Score = 127 bits (64), Expect = 5e-26 Identities = 85/92 (92%) Strand = Plus / Plus Query: 211 gtcatcttcatggccggcgtcgtcatcggcctctccgtcagcgccaacgtctcccgctac 270 |||||||||||||| ||||| |||||||| ||||||| ||||||||||| ||||||||| Sbjct: 456 gtcatcttcatggcgggcgtggtcatcgggctctccgcgagcgccaacgtgtcccgctac 515 Query: 271 tactacaactcccacaccgagctcttcttccc 302 ||||||||||| |||||||||||||||||||| Sbjct: 516 tactacaactcgcacaccgagctcttcttccc 547
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 297 bits (150), Expect = 2e-77 Identities = 222/246 (90%) Strand = Plus / Minus Query: 361 ttcaaggccttcgtccacccgccccaactcgcgcactccatgaccgacgaggagctcttc 420 |||||| | |||||||||||||| || ||||||||||||||| ||||| |||||||||| Sbjct: 542457 ttcaagtcgttcgtccacccgccgcacctcgcgcactccatgtccgacccggagctcttc 542398 Query: 421 tggcgcgccaccctcgtgccaaccgccgacgagttccccttccagcgcgtccccaaggtc 480 ||||||||| ||||||| || ||||||||| ||||||||||||||||||||||||||| Sbjct: 542397 tggcgcgcctccctcgtccccgtcgccgacgacttccccttccagcgcgtccccaaggtc 542338 Query: 481 gccttcctcttcatgacccgcggcccgctccccttcgcgcccctctgggagcgcttcttc 540 ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| Sbjct: 542337 gccttcctcttcatgacgcgcggcccgctccccttcgcgccgctctgggaccgcttcttc 542278 Query: 541 cggggacaccagggcctcttctccgtctacctccacaccataccggactacaagctcaac 600 || || ||||| ||||||| |||||||||| |||||||| | || ||||||||||||||| Sbjct: 542277 cgcggccaccacggcctctactccgtctacgtccacaccctccccgactacaagctcaac 542218 Query: 601 gtctcc 606 |||||| Sbjct: 542217 gtctcc 542212 Score = 127 bits (64), Expect = 5e-26 Identities = 85/92 (92%) Strand = Plus / Minus Query: 211 gtcatcttcatggccggcgtcgtcatcggcctctccgtcagcgccaacgtctcccgctac 270 |||||||||||||| ||||| |||||||| ||||||| ||||||||||| ||||||||| Sbjct: 542595 gtcatcttcatggcgggcgtggtcatcgggctctccgcgagcgccaacgtgtcccgctac 542536 Query: 271 tactacaactcccacaccgagctcttcttccc 302 ||||||||||| |||||||||||||||||||| Sbjct: 542535 tactacaactcgcacaccgagctcttcttccc 542504
>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0007D08 Length = 183142 Score = 297 bits (150), Expect = 2e-77 Identities = 222/246 (90%) Strand = Plus / Minus Query: 361 ttcaaggccttcgtccacccgccccaactcgcgcactccatgaccgacgaggagctcttc 420 |||||| | |||||||||||||| || ||||||||||||||| ||||| |||||||||| Sbjct: 132417 ttcaagtcgttcgtccacccgccgcacctcgcgcactccatgtccgacccggagctcttc 132358 Query: 421 tggcgcgccaccctcgtgccaaccgccgacgagttccccttccagcgcgtccccaaggtc 480 ||||||||| ||||||| || ||||||||| ||||||||||||||||||||||||||| Sbjct: 132357 tggcgcgcctccctcgtccccgtcgccgacgacttccccttccagcgcgtccccaaggtc 132298 Query: 481 gccttcctcttcatgacccgcggcccgctccccttcgcgcccctctgggagcgcttcttc 540 ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| Sbjct: 132297 gccttcctcttcatgacgcgcggcccgctccccttcgcgccgctctgggaccgcttcttc 132238 Query: 541 cggggacaccagggcctcttctccgtctacctccacaccataccggactacaagctcaac 600 || || ||||| ||||||| |||||||||| |||||||| | || ||||||||||||||| Sbjct: 132237 cgcggccaccacggcctctactccgtctacgtccacaccctccccgactacaagctcaac 132178 Query: 601 gtctcc 606 |||||| Sbjct: 132177 gtctcc 132172 Score = 127 bits (64), Expect = 5e-26 Identities = 85/92 (92%) Strand = Plus / Minus Query: 211 gtcatcttcatggccggcgtcgtcatcggcctctccgtcagcgccaacgtctcccgctac 270 |||||||||||||| ||||| |||||||| ||||||| ||||||||||| ||||||||| Sbjct: 132555 gtcatcttcatggcgggcgtggtcatcgggctctccgcgagcgccaacgtgtcccgctac 132496 Query: 271 tactacaactcccacaccgagctcttcttccc 302 ||||||||||| |||||||||||||||||||| Sbjct: 132495 tactacaactcgcacaccgagctcttcttccc 132464
>dbj|AK100025.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146H09, full insert sequence Length = 1909 Score = 297 bits (150), Expect = 2e-77 Identities = 222/246 (90%) Strand = Plus / Plus Query: 361 ttcaaggccttcgtccacccgccccaactcgcgcactccatgaccgacgaggagctcttc 420 |||||| | |||||||||||||| || ||||||||||||||| ||||| |||||||||| Sbjct: 594 ttcaagtcgttcgtccacccgccgcacctcgcgcactccatgtccgacccggagctcttc 653 Query: 421 tggcgcgccaccctcgtgccaaccgccgacgagttccccttccagcgcgtccccaaggtc 480 ||||||||| ||||||| || ||||||||| ||||||||||||||||||||||||||| Sbjct: 654 tggcgcgcctccctcgtccccgtcgccgacgacttccccttccagcgcgtccccaaggtc 713 Query: 481 gccttcctcttcatgacccgcggcccgctccccttcgcgcccctctgggagcgcttcttc 540 ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| Sbjct: 714 gccttcctcttcatgacgcgcggcccgctccccttcgcgccgctctgggaccgcttcttc 773 Query: 541 cggggacaccagggcctcttctccgtctacctccacaccataccggactacaagctcaac 600 || || ||||| ||||||| |||||||||| |||||||| | || ||||||||||||||| Sbjct: 774 cgcggccaccacggcctctactccgtctacgtccacaccctccccgactacaagctcaac 833 Query: 601 gtctcc 606 |||||| Sbjct: 834 gtctcc 839 Score = 127 bits (64), Expect = 5e-26 Identities = 85/92 (92%) Strand = Plus / Plus Query: 211 gtcatcttcatggccggcgtcgtcatcggcctctccgtcagcgccaacgtctcccgctac 270 |||||||||||||| ||||| |||||||| ||||||| ||||||||||| ||||||||| Sbjct: 456 gtcatcttcatggcgggcgtggtcatcgggctctccgcgagcgccaacgtgtcccgctac 515 Query: 271 tactacaactcccacaccgagctcttcttccc 302 ||||||||||| |||||||||||||||||||| Sbjct: 516 tactacaactcgcacaccgagctcttcttccc 547
>gb|AY105382.1| Zea mays PCO121811 mRNA sequence Length = 1210 Score = 252 bits (127), Expect = 1e-63 Identities = 211/239 (88%) Strand = Plus / Plus Query: 361 ttcaaggccttcgtccacccgccccaactcgcgcactccatgaccgacgaggagctcttc 420 |||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct: 136 ttcagggccttcgtccacccgccccgcctcgcgcactccatgaccgacgacgagctcttc 195 Query: 421 tggcgcgccaccctcgtgccaaccgccgacgagttccccttccagcgcgtccccaaggtc 480 ||||| ||| |||||||||| | ||||| |||||||| |||||||| || ||||||||| Sbjct: 196 tggcgggcctccctcgtgcctagggccgaggagttcccgttccagcgggtgcccaaggtc 255 Query: 481 gccttcctcttcatgacccgcggcccgctccccttcgcgcccctctgggagcgcttcttc 540 ||||||||||||||| | |||||||| ||||||||||||| |||||||| |||||| Sbjct: 256 gccttcctcttcatggcgcgcggccccatccccttcgcgccgctctgggacaagttcttc 315 Query: 541 cggggacaccagggcctcttctccgtctacctccacaccataccggactacaagctcaa 599 || ||||||||||| |||| |||||||||| |||||||| | ||||||||||||||||| Sbjct: 316 cgcggacaccaggggctctactccgtctacgtccacaccgtgccggactacaagctcaa 374 Score = 48.1 bits (24), Expect = 0.034 Identities = 47/54 (87%), Gaps = 3/54 (5%) Strand = Plus / Plus Query: 265 cgctactactacaac---tcccacaccgagctcttcttccccaccgccacctac 315 ||||||||||||||| |||||| |||||||||||||||| || |||||||| Sbjct: 40 cgctactactacaacgcctcccacgccgagctcttcttcccggccaccacctac 93
>gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 genomic sequence, complete sequence Length = 163712 Score = 87.7 bits (44), Expect = 4e-14 Identities = 95/112 (84%) Strand = Plus / Minus Query: 465 gcgcgtccccaaggtcgccttcctcttcatgacccgcggcccgctccccttcgcgcccct 524 |||||| |||||||| |||||| | ||| | ||||||||||||||||| | ||||| || Sbjct: 135476 gcgcgtgcccaaggtggccttcatgttcctcacccgcggcccgctcccgctggcgccgct 135417 Query: 525 ctgggagcgcttcttccggggacaccagggcctcttctccgtctacctccac 576 |||||||||||||||||| || ||| | || |||| |||||||||| ||||| Sbjct: 135416 ctgggagcgcttcttccgcggccacgacgggctctactccgtctacgtccac 135365
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 87.7 bits (44), Expect = 4e-14 Identities = 95/112 (84%) Strand = Plus / Plus Query: 465 gcgcgtccccaaggtcgccttcctcttcatgacccgcggcccgctccccttcgcgcccct 524 |||||| |||||||| |||||| | ||| | ||||||||||||||||| | ||||| || Sbjct: 29635901 gcgcgtgcccaaggtggccttcatgttcctcacccgcggcccgctcccgctggcgccgct 29635960 Query: 525 ctgggagcgcttcttccggggacaccagggcctcttctccgtctacctccac 576 |||||||||||||||||| || ||| | || |||| |||||||||| ||||| Sbjct: 29635961 ctgggagcgcttcttccgcggccacgacgggctctactccgtctacgtccac 29636012 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 471 ccccaaggtcgccttcctcttc 492 |||||||||||||||||||||| Sbjct: 24817176 ccccaaggtcgccttcctcttc 24817155
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 87.7 bits (44), Expect = 4e-14 Identities = 95/112 (84%) Strand = Plus / Plus Query: 465 gcgcgtccccaaggtcgccttcctcttcatgacccgcggcccgctccccttcgcgcccct 524 |||||| |||||||| |||||| | ||| | ||||||||||||||||| | ||||| || Sbjct: 29727323 gcgcgtgcccaaggtggccttcatgttcctcacccgcggcccgctcccgctggcgccgct 29727382 Query: 525 ctgggagcgcttcttccggggacaccagggcctcttctccgtctacctccac 576 |||||||||||||||||| || ||| | || |||| |||||||||| ||||| Sbjct: 29727383 ctgggagcgcttcttccgcggccacgacgggctctactccgtctacgtccac 29727434 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 471 ccccaaggtcgccttcctcttc 492 |||||||||||||||||||||| Sbjct: 24908499 ccccaaggtcgccttcctcttc 24908478
>ref|XM_463522.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1446 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 517 gcgcccctctgggagcgcttcttccggggacaccagggcctcttctccgtctacctccac 576 ||||| ||||||||||| |||||||| |||||| |||||||||||||| ||||| ||||| Sbjct: 373 gcgccgctctgggagcgattcttccgtggacacgagggcctcttctccatctacgtccac 432
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 517 gcgcccctctgggagcgcttcttccggggacaccagggcctcttctccgtctacctccac 576 ||||| ||||||||||| |||||||| |||||| |||||||||||||| ||||| ||||| Sbjct: 38007048 gcgccgctctgggagcgattcttccgtggacacgagggcctcttctccatctacgtccac 38006989 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 393 gcactccatgaccgacgaggagctc 417 |||| |||||||||||||||||||| Sbjct: 1856445 gcacaccatgaccgacgaggagctc 1856469 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gcgccacgggcgactgcggc 354 |||||||||||||||||||| Sbjct: 36023819 gcgccacgggcgactgcggc 36023800
>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A10 Length = 137348 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 517 gcgcccctctgggagcgcttcttccggggacaccagggcctcttctccgtctacctccac 576 ||||| ||||||||||| |||||||| |||||| |||||||||||||| ||||| ||||| Sbjct: 87992 gcgccgctctgggagcgattcttccgtggacacgagggcctcttctccatctacgtccac 87933
>dbj|AK105949.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C09, full insert sequence Length = 1397 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 517 gcgcccctctgggagcgcttcttccggggacaccagggcctcttctccgtctacctccac 576 ||||| ||||||||||| |||||||| |||||| |||||||||||||| ||||| ||||| Sbjct: 511 gcgccgctctgggagcgattcttccgtggacacgagggcctcttctccatctacgtccac 570
>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0648C09 Length = 107522 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 517 gcgcccctctgggagcgcttcttccggggacaccagggcctcttctccgtctacctccac 576 ||||| ||||||||||| |||||||| |||||| |||||||||||||| ||||| ||||| Sbjct: 103324 gcgccgctctgggagcgattcttccgtggacacgagggcctcttctccatctacgtccac 103265
>ref|XM_471505.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1239 Score = 52.0 bits (26), Expect = 0.002 Identities = 137/174 (78%) Strand = Plus / Plus Query: 393 gcactccatgaccgacgaggagctcttctggcgcgccaccctcgtgccaaccgccgacga 452 |||||| |||| ||||||||||| ||||||||||| || | | ||| || || || Sbjct: 345 gcactcgatgaaggacgaggagctgttctggcgcgcgtccatggcgccgcgcgtggagga 404 Query: 453 gttccccttccagcgcgtccccaaggtcgccttcctcttcatgacccgcggcccgctccc 512 || ||| | ||||||||| |||||||| || ||||| ||| |||| ||||| ||||| || Sbjct: 405 gtacccgtaccagcgcgtgcccaaggtggcgttcctgttcctgacgcgcgggccgctgcc 464 Query: 513 cttcgcgcccctctgggagcgcttcttccggggacaccagggcctcttctccgt 566 |||||||| || |||||||| || |||| || ||| |||| |||| |||||| Sbjct: 465 gttcgcgccgctgtgggagcggtttttccacgggcacgaggggctctactccgt 518
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 52.0 bits (26), Expect = 0.002 Identities = 137/174 (78%) Strand = Plus / Minus Query: 393 gcactccatgaccgacgaggagctcttctggcgcgccaccctcgtgccaaccgccgacga 452 |||||| |||| ||||||||||| ||||||||||| || | | ||| || || || Sbjct: 11474954 gcactcgatgaaggacgaggagctgttctggcgcgcgtccatggcgccgcgcgtggagga 11474895 Query: 453 gttccccttccagcgcgtccccaaggtcgccttcctcttcatgacccgcggcccgctccc 512 || ||| | ||||||||| |||||||| || ||||| ||| |||| ||||| ||||| || Sbjct: 11474894 gtacccgtaccagcgcgtgcccaaggtggcgttcctgttcctgacgcgcgggccgctgcc 11474835 Query: 513 cttcgcgcccctctgggagcgcttcttccggggacaccagggcctcttctccgt 566 |||||||| || |||||||| || |||| || ||| |||| |||| |||||| Sbjct: 11474834 gttcgcgccgctgtgggagcggtttttccacgggcacgaggggctctactccgt 11474781
>dbj|AK121455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142P15, full insert sequence Length = 1598 Score = 52.0 bits (26), Expect = 0.002 Identities = 137/174 (78%) Strand = Plus / Plus Query: 393 gcactccatgaccgacgaggagctcttctggcgcgccaccctcgtgccaaccgccgacga 452 |||||| |||| ||||||||||| ||||||||||| || | | ||| || || || Sbjct: 556 gcactcgatgaaggacgaggagctgttctggcgcgcgtccatggcgccgcgcgtggagga 615 Query: 453 gttccccttccagcgcgtccccaaggtcgccttcctcttcatgacccgcggcccgctccc 512 || ||| | ||||||||| |||||||| || ||||| ||| |||| ||||| ||||| || Sbjct: 616 gtacccgtaccagcgcgtgcccaaggtggcgttcctgttcctgacgcgcgggccgctgcc 675 Query: 513 cttcgcgcccctctgggagcgcttcttccggggacaccagggcctcttctccgt 566 |||||||| || |||||||| || |||| || ||| |||| |||| |||||| Sbjct: 676 gttcgcgccgctgtgggagcggtttttccacgggcacgaggggctctactccgt 729
>emb|AL606602.2|OSJN00067 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0056F09, complete sequence Length = 148191 Score = 52.0 bits (26), Expect = 0.002 Identities = 137/174 (78%) Strand = Plus / Minus Query: 393 gcactccatgaccgacgaggagctcttctggcgcgccaccctcgtgccaaccgccgacga 452 |||||| |||| ||||||||||| ||||||||||| || | | ||| || || || Sbjct: 100567 gcactcgatgaaggacgaggagctgttctggcgcgcgtccatggcgccgcgcgtggagga 100508 Query: 453 gttccccttccagcgcgtccccaaggtcgccttcctcttcatgacccgcggcccgctccc 512 || ||| | ||||||||| |||||||| || ||||| ||| |||| ||||| ||||| || Sbjct: 100507 gtacccgtaccagcgcgtgcccaaggtggcgttcctgttcctgacgcgcgggccgctgcc 100448 Query: 513 cttcgcgcccctctgggagcgcttcttccggggacaccagggcctcttctccgt 566 |||||||| || |||||||| || |||| || ||| |||| |||| |||||| Sbjct: 100447 gttcgcgccgctgtgggagcggtttttccacgggcacgaggggctctactccgt 100394
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 185 gcctgctcaagctcgtcaccgcc 207 ||||||||||||||||||||||| Sbjct: 2037276 gcctgctcaagctcgtcaccgcc 2037254
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 228 cgtcgtcatcggcctctccgtca 250 ||||||||||||||||||||||| Sbjct: 537411 cgtcgtcatcggcctctccgtca 537389
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13 map near C50029S, complete sequence Length = 129900 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 471 ccccaaggtcgccttcctcttc 492 |||||||||||||||||||||| Sbjct: 52411 ccccaaggtcgccttcctcttc 52390
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128559 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 471 ccccaaggtcgccttcctcttc 492 |||||||||||||||||||||| Sbjct: 104127 ccccaaggtcgccttcctcttc 104106
>dbj|AK109329.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B01, full insert sequence Length = 1556 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 471 ccccaaggtcgccttcctcttc 492 |||||||||||||||||||||| Sbjct: 470 ccccaaggtcgccttcctcttc 491
>ref|XM_550035.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1236 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 393 gcactccatgaccgacgaggagctc 417 |||| |||||||||||||||||||| Sbjct: 342 gcacaccatgaccgacgaggagctc 366
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 tgctcgatctcgccgccggcg 24 ||||||||||||||||||||| Sbjct: 801289 tgctcgatctcgccgccggcg 801309
>ref|XM_414937.1| PREDICTED: Gallus gallus similar to PRO0149 protein (LOC416639), mRNA Length = 1050 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 tcctcctcctccgccggccct 65 ||||||||||||||||||||| Sbjct: 164 tcctcctcctccgccggccct 144
>ref|XM_846295.1| PREDICTED: Canis familiaris similar to cytochrome P450, family 11, subfamily B, polypeptide 1 isoform 1 precursor (LOC609093), mRNA Length = 1689 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 tcctcctcctccgccggccct 65 ||||||||||||||||||||| Sbjct: 279 tcctcctcctccgccggccct 299
>ref|XM_539192.2| PREDICTED: Canis familiaris similar to Cytochrome P450 11B2, mitochondrial precursor (CYPXIB2) (P-450Aldo) (Aldosterone synthase) (ALDOS) (Aldosterone-synthesizing enzyme) (Steroid 18-hydroxylase) (P-450C18) (LOC482071), mRNA Length = 1782 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 tcctcctcctccgccggccct 65 ||||||||||||||||||||| Sbjct: 123 tcctcctcctccgccggccct 143
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 gctcgatctcgccgccggcgg 25 ||||||||||||||||||||| Sbjct: 3014948 gctcgatctcgccgccggcgg 3014968
>emb|BX935726.1| Gallus gallus finished cDNA, clone ChEST327i9 Length = 1098 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 tcctcctcctccgccggccct 65 ||||||||||||||||||||| Sbjct: 54 tcctcctcctccgccggccct 34
>dbj|AP003214.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0083M16 Length = 179428 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 393 gcactccatgaccgacgaggagctc 417 |||| |||||||||||||||||||| Sbjct: 97827 gcacaccatgaccgacgaggagctc 97851
>gb|AF466646.1| Zea mays putative transposase (Z195D10.1) gene, partial cds; glycyl-tRNA synthetase (Z195D10.2), ornithine carbamoyltransferase (Z195D10.3), putative gag protein (Z195D10.5), putative SET-domain transcriptional regulator (Z195D10.7), putative oxysterol-binding protein (Z195D10.8), putative polyprotein (Z195D10.9), putative oxysterol-binding protein (Z195D10.10), putative gag-pol polyprotein (Z195D10.11), putative phosphatidylinositol-4-phosphate-5-kinase (Z195D10.12), hypothetical protein (Z195D10.15), putative gag-pol polyprotein (Z195D10.16), putative polyprotein (Z195D10.17), putative retrotransposon protein (Z195D10.18), and prpol (Z195D10.19) genes, complete cds; and putative teosinte branched2 (Z195D10.20) gene, partial cds Length = 141939 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 335 gcgccacgggcgactgcggccccgg 359 |||||||||||||||||||| |||| Sbjct: 4343 gcgccacgggcgactgcggctccgg 4367
>ref|NM_190525.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 744 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gcgccacgggcgactgcggc 354 |||||||||||||||||||| Sbjct: 278 gcgccacgggcgactgcggc 297
>ref|NM_175381.4| Mus musculus RIKEN cDNA 2700081O15 gene (2700081O15Rik), mRNA Length = 4242 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tcctcctcctccgccggccc 64 |||||||||||||||||||| Sbjct: 554 tcctcctcctccgccggccc 535
>gb|BT017223.1| Zea mays clone EL01N0373E03.c mRNA sequence Length = 1010 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gcgccacgggcgactgcggc 354 |||||||||||||||||||| Sbjct: 232 gcgccacgggcgactgcggc 251
>gb|BT017170.1| Zea mays clone EL01N0369A02.c mRNA sequence Length = 1122 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gcgccacgggcgactgcggc 354 |||||||||||||||||||| Sbjct: 351 gcgccacgggcgactgcggc 370
>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete sequence Length = 1019846 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 catgaccgacgaggagctct 418 |||||||||||||||||||| Sbjct: 61202 catgaccgacgaggagctct 61221
>gb|BC059063.1| Mus musculus RIKEN cDNA 2700081O15 gene, mRNA (cDNA clone MGC:69897 IMAGE:6825195), complete cds Length = 4084 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tcctcctcctccgccggccc 64 |||||||||||||||||||| Sbjct: 768 tcctcctcctccgccggccc 749
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 cttcgtccacccgccccaac 388 |||||||||||||||||||| Sbjct: 796185 cttcgtccacccgccccaac 796204
>ref|XM_567591.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNK00200) partial mRNA Length = 1233 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 catgaccgacgaggagctct 418 |||||||||||||||||||| Sbjct: 699 catgaccgacgaggagctct 718
>gb|AC129188.3| Mus musculus BAC clone RP23-446G23 from chromosome 19, complete sequence Length = 175245 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tcctcctcctccgccggccc 64 |||||||||||||||||||| Sbjct: 135552 tcctcctcctccgccggccc 135533
>gb|AC163276.4| Mus musculus chromosome 19, clone RP24-316F20, complete sequence Length = 169300 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tcctcctcctccgccggccc 64 |||||||||||||||||||| Sbjct: 120485 tcctcctcctccgccggccc 120504
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 ctcgatctcgccgccggcgg 25 |||||||||||||||||||| Sbjct: 2984875 ctcgatctcgccgccggcgg 2984894
>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16 Length = 348580 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 ctcgatctcgccgccggcgg 25 |||||||||||||||||||| Sbjct: 302842 ctcgatctcgccgccggcgg 302861
>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7 Length = 349122 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 catggccggcgtcgtcatcg 238 |||||||||||||||||||| Sbjct: 196259 catggccggcgtcgtcatcg 196278
>ref|NM_204878.1| Gallus gallus pepsinogen 5, group I (pepsinogen A) (PGA5), mRNA Length = 1266 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 549 ccagggcctcttctccgtctacct 572 ||||| |||||||||||||||||| Sbjct: 652 ccaggacctcttctccgtctacct 675
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 gcttgctcgatctcgccgcc 20 |||||||||||||||||||| Sbjct: 1313967 gcttgctcgatctcgccgcc 1313948
>emb|AJ783895.1| Biphyllus lunatus mRNA for S23e ribosomal protein (rpS23e gene) Length = 432 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 458 ccttccagcgcgtccccaag 477 |||||||||||||||||||| Sbjct: 112 ccttccagcgcgtccccaag 93
>emb|BX323584.9| Zebrafish DNA sequence from clone DKEY-105I23 in linkage group 25, complete sequence Length = 140524 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 255 caacgtctcccgctactactacaactcccaca 286 |||||||| | ||||||||||||||| ||||| Sbjct: 139074 caacgtctactgctactactacaactaccaca 139043
>gb|BC096638.1| Mus musculus RIKEN cDNA 2700081O15 gene, mRNA (cDNA clone MGC:106440 IMAGE:6825382), complete cds Length = 4242 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tcctcctcctccgccggccc 64 |||||||||||||||||||| Sbjct: 554 tcctcctcctccgccggccc 535
>gb|BC096549.1| Mus musculus RIKEN cDNA 2700081O15 gene, mRNA (cDNA clone IMAGE:6852034), partial cds Length = 4047 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tcctcctcctccgccggccc 64 |||||||||||||||||||| Sbjct: 368 tcctcctcctccgccggccc 349
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 tcttcttccccaccgccacc 312 |||||||||||||||||||| Sbjct: 13852897 tcttcttccccaccgccacc 13852878
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gcgccacgggcgactgcggc 354 |||||||||||||||||||| Sbjct: 28442521 gcgccacgggcgactgcggc 28442540
>dbj|AP003241.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0408C03 Length = 141273 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gcgccacgggcgactgcggc 354 |||||||||||||||||||| Sbjct: 36544 gcgccacgggcgactgcggc 36525
>dbj|AP003231.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0031D11 Length = 138108 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gcgccacgggcgactgcggc 354 |||||||||||||||||||| Sbjct: 122497 gcgccacgggcgactgcggc 122478
>dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0661G04 Length = 157292 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gcgccacgggcgactgcggc 354 |||||||||||||||||||| Sbjct: 155099 gcgccacgggcgactgcggc 155118
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 cttctggcgcgccaccctcg 436 |||||||||||||||||||| Sbjct: 5337881 cttctggcgcgccaccctcg 5337862
>dbj|AP005457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0532H03 Length = 166128 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gcgccacgggcgactgcggc 354 |||||||||||||||||||| Sbjct: 49554 gcgccacgggcgactgcggc 49573
>dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1655_B12 Length = 132736 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 tcttcttccccaccgccacc 312 |||||||||||||||||||| Sbjct: 102381 tcttcttccccaccgccacc 102362
>dbj|AP005421.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0435D08 Length = 148912 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 tcttcttccccaccgccacc 312 |||||||||||||||||||| Sbjct: 6574 tcttcttccccaccgccacc 6555
>dbj|AK108191.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-C02, full insert sequence Length = 1130 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gcgccacgggcgactgcggc 354 |||||||||||||||||||| Sbjct: 344 gcgccacgggcgactgcggc 363
>gb|AY625898.1| Pseudomonas aeruginosa phage F116, complete genome Length = 65195 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 438 gccaaccgccgacgagttcccctt 461 |||||||||||| ||||||||||| Sbjct: 51107 gccaaccgccgatgagttcccctt 51130
>dbj|AK060655.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-A02, full insert sequence Length = 1001 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gcgccacgggcgactgcggc 354 |||||||||||||||||||| Sbjct: 336 gcgccacgggcgactgcggc 355
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 553 ggcctcttctccgtctacct 572 |||||||||||||||||||| Sbjct: 2526623 ggcctcttctccgtctacct 2526642
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 458 ccttccagcgcgtccccaaggtcg 481 |||||||||||| ||||||||||| Sbjct: 3345248 ccttccagcgcggccccaaggtcg 3345225
>dbj|AB089791.1| Oryctolagus cuniculus mRNA for pepsinogen II-4, complete cds Length = 1268 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 549 ccagggcctcttctccgtctacct 572 ||||| |||||||||||||||||| Sbjct: 658 ccaggacctcttctccgtctacct 681
>gb|M59235.1|RABPEPII23 Rabbit pepsinogen 11-2/3 mRNA, complete cds Length = 1266 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 549 ccagggcctcttctccgtctacct 572 ||||| |||||||||||||||||| Sbjct: 656 ccaggacctcttctccgtctacct 679
>dbj|AB025283.1| Gallus gallus cPgA gene for pepsinogen A, complete cds Length = 4318 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 549 ccagggcctcttctccgtctacct 572 ||||| |||||||||||||||||| Sbjct: 3193 ccaggacctcttctccgtctacct 3216
>dbj|AB025281.1| Gallus gallus cPgA mRNA for pepsinogen A, complete cds Length = 1266 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 549 ccagggcctcttctccgtctacct 572 ||||| |||||||||||||||||| Sbjct: 652 ccaggacctcttctccgtctacct 675 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,092,888 Number of Sequences: 3902068 Number of extensions: 4092888 Number of successful extensions: 94692 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92675 Number of HSP's gapped (non-prelim): 2015 length of query: 606 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 583 effective length of database: 17,143,297,704 effective search space: 9994542561432 effective search space used: 9994542561432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
