ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63d01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ377064.1| Oryza sativa (japonica cultivar-group) U1 small nuclear ribonucleoprotein 70K splice variant 2 mRNA, complete cds, alternatively spliced Length = 3284 Score = 432 bits (218), Expect = e-118 Identities = 407/470 (86%) Strand = Plus / Plus Query: 101 cgcgccaacgtccagcagctcaagctcatggggcagggccaccctacgggcctcacgccg 160 |||| |||||| |||||||||||||| ||||||||||| ||||| ||||||||||| || Sbjct: 161 cgcgtcaacgtgcagcagctcaagctgatggggcagggacacccgacgggcctcaccccc 220 Query: 161 aacctgctcaagctgttcgaggcgcggcctatgctcgagcacaagccgcccgtccagaag 220 |||||||||||||| |||||| | || || |||||| ||||||||||||| ||||| Sbjct: 221 aacctgctcaagctcttcgagccccgcccgccgctcgacttcaagccgcccgtcgagaag 280 Query: 221 cgcaagttgccggcctacacggggatggcgcagtttgtgtcgcggtttgccgagcctggc 280 |||||||||||||||||||| |||||||||||||| ||||||| |||||| ||||| || Sbjct: 281 cgcaagttgccggcctacactgggatggcgcagttcgtgtcgcagtttgcggagcccggt 340 Query: 281 gacccagagtatgcgccgcctgtcccaacgtgcgagactaaggccgaaaagaaggataga 340 ||||| ||||| ||||| || ||||| || |||||||| ||||| |||||||||||||| Sbjct: 341 gaccctgagtacgcgccacccgtccccacatgcgagaccaaggctgaaaagaaggatagg 400 Query: 341 atcaggaaacttaagcttgagcaaggtgcagataaggtggccaaagagcttcagaactat 400 ||| | ||| ||||||||| |||||||| | ||||||||| ||||||||||||| ||| Sbjct: 401 atccgcaaaagtaagcttgaccaaggtgcggctaaggtggctgaagagcttcagaaatat 460 Query: 401 aacccacaaagtgatcccaataccacttcagatccgtacaaaacactcttcgttgcaaga 460 ||||||| ||||| |||||| ||||| |||||| |||||||||||||| ||||||||| Sbjct: 461 gacccacagagtgaccccaatgccactggagatccatacaaaacactctttgttgcaaga 520 Query: 461 cttaattacgagacatctgagagtagggttaagcgggagtttgaagcctatgggcctatt 520 ||||| || ||||| |||||| |||||| ||||||||||||||||| |||||||||||| Sbjct: 521 cttaactatgagacgtctgagcatagggtcaagcgggagtttgaagcttatgggcctatt 580 Query: 521 aaaagggtaggtgcatgtggtaaatcccagtacaggtggagttattcctc 570 ||||||||| || |||||||||||| ||||| |||||||| ||||||||| Sbjct: 581 aaaagggtaagtacatgtggtaaattccagtgcaggtggacttattcctc 630 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Plus Query: 26 atgggcgaccacggcaacgcgatgacgaggggcaacccggacggcggc 73 ||||||||| |||||| || ||||| | |||| ||||||||||||||| Sbjct: 86 atgggcgactacggcagcgggatgatgcgggggaacccggacggcggc 133
>gb|DQ377063.1| Oryza sativa (japonica cultivar-group) U1 small nuclear ribonucleoprotein 70K splice variant 1 mRNA, complete cds, alternatively spliced Length = 3443 Score = 432 bits (218), Expect = e-118 Identities = 407/470 (86%) Strand = Plus / Plus Query: 101 cgcgccaacgtccagcagctcaagctcatggggcagggccaccctacgggcctcacgccg 160 |||| |||||| |||||||||||||| ||||||||||| ||||| ||||||||||| || Sbjct: 161 cgcgtcaacgtgcagcagctcaagctgatggggcagggacacccgacgggcctcaccccc 220 Query: 161 aacctgctcaagctgttcgaggcgcggcctatgctcgagcacaagccgcccgtccagaag 220 |||||||||||||| |||||| | || || |||||| ||||||||||||| ||||| Sbjct: 221 aacctgctcaagctcttcgagccccgcccgccgctcgacttcaagccgcccgtcgagaag 280 Query: 221 cgcaagttgccggcctacacggggatggcgcagtttgtgtcgcggtttgccgagcctggc 280 |||||||||||||||||||| |||||||||||||| ||||||| |||||| ||||| || Sbjct: 281 cgcaagttgccggcctacactgggatggcgcagttcgtgtcgcagtttgcggagcccggt 340 Query: 281 gacccagagtatgcgccgcctgtcccaacgtgcgagactaaggccgaaaagaaggataga 340 ||||| ||||| ||||| || ||||| || |||||||| ||||| |||||||||||||| Sbjct: 341 gaccctgagtacgcgccacccgtccccacatgcgagaccaaggctgaaaagaaggatagg 400 Query: 341 atcaggaaacttaagcttgagcaaggtgcagataaggtggccaaagagcttcagaactat 400 ||| | ||| ||||||||| |||||||| | ||||||||| ||||||||||||| ||| Sbjct: 401 atccgcaaaagtaagcttgaccaaggtgcggctaaggtggctgaagagcttcagaaatat 460 Query: 401 aacccacaaagtgatcccaataccacttcagatccgtacaaaacactcttcgttgcaaga 460 ||||||| ||||| |||||| ||||| |||||| |||||||||||||| ||||||||| Sbjct: 461 gacccacagagtgaccccaatgccactggagatccatacaaaacactctttgttgcaaga 520 Query: 461 cttaattacgagacatctgagagtagggttaagcgggagtttgaagcctatgggcctatt 520 ||||| || ||||| |||||| |||||| ||||||||||||||||| |||||||||||| Sbjct: 521 cttaactatgagacgtctgagcatagggtcaagcgggagtttgaagcttatgggcctatt 580 Query: 521 aaaagggtaggtgcatgtggtaaatcccagtacaggtggagttattcctc 570 ||||||||| || |||||||||||| ||||| |||||||| ||||||||| Sbjct: 581 aaaagggtaagtacatgtggtaaattccagtgcaggtggacttattcctc 630 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Plus Query: 26 atgggcgaccacggcaacgcgatgacgaggggcaacccggacggcggc 73 ||||||||| |||||| || ||||| | |||| ||||||||||||||| Sbjct: 86 atgggcgactacggcagcgggatgatgcgggggaacccggacggcggc 133
>dbj|AK100686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113P16, full insert sequence Length = 3436 Score = 432 bits (218), Expect = e-118 Identities = 407/470 (86%) Strand = Plus / Plus Query: 101 cgcgccaacgtccagcagctcaagctcatggggcagggccaccctacgggcctcacgccg 160 |||| |||||| |||||||||||||| ||||||||||| ||||| ||||||||||| || Sbjct: 172 cgcgtcaacgtgcagcagctcaagctgatggggcagggacacccgacgggcctcaccccc 231 Query: 161 aacctgctcaagctgttcgaggcgcggcctatgctcgagcacaagccgcccgtccagaag 220 |||||||||||||| |||||| | || || |||||| ||||||||||||| ||||| Sbjct: 232 aacctgctcaagctcttcgagccccgcccgccgctcgacttcaagccgcccgtcgagaag 291 Query: 221 cgcaagttgccggcctacacggggatggcgcagtttgtgtcgcggtttgccgagcctggc 280 |||||||||||||||||||| |||||||||||||| ||||||| |||||| ||||| || Sbjct: 292 cgcaagttgccggcctacactgggatggcgcagttcgtgtcgcagtttgcggagcccggt 351 Query: 281 gacccagagtatgcgccgcctgtcccaacgtgcgagactaaggccgaaaagaaggataga 340 ||||| ||||| ||||| || ||||| || |||||||| ||||| |||||||||||||| Sbjct: 352 gaccctgagtacgcgccacccgtccccacatgcgagaccaaggctgaaaagaaggatagg 411 Query: 341 atcaggaaacttaagcttgagcaaggtgcagataaggtggccaaagagcttcagaactat 400 ||| | ||| ||||||||| |||||||| | ||||||||| ||||||||||||| ||| Sbjct: 412 atccgcaaaagtaagcttgaccaaggtgcggctaaggtggctgaagagcttcagaaatat 471 Query: 401 aacccacaaagtgatcccaataccacttcagatccgtacaaaacactcttcgttgcaaga 460 ||||||| ||||| |||||| ||||| |||||| |||||||||||||| ||||||||| Sbjct: 472 gacccacagagtgaccccaatgccactggagatccatacaaaacactctttgttgcaaga 531 Query: 461 cttaattacgagacatctgagagtagggttaagcgggagtttgaagcctatgggcctatt 520 ||||| || ||||| |||||| |||||| ||||||||||||||||| |||||||||||| Sbjct: 532 cttaactatgagacgtctgagcatagggtcaagcgggagtttgaagcttatgggcctatt 591 Query: 521 aaaagggtaggtgcatgtggtaaatcccagtacaggtggagttattcctc 570 ||||||||| || |||||||||||| ||||| |||||||| ||||||||| Sbjct: 592 aaaagggtaagtacatgtggtaaattccagtgcaggtggacttattcctc 641 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Plus Query: 26 atgggcgaccacggcaacgcgatgacgaggggcaacccggacggcggc 73 ||||||||| |||||| || ||||| | |||| ||||||||||||||| Sbjct: 97 atgggcgactacggcagcgggatgatgcgggggaacccggacggcggc 144
>gb|DQ377062.1| Oryza sativa (japonica cultivar-group) U1 small nuclear ribonucleoprotein 70K mRNA, complete cds, alternatively spliced Length = 1815 Score = 391 bits (197), Expect = e-105 Identities = 371/429 (86%) Strand = Plus / Plus Query: 101 cgcgccaacgtccagcagctcaagctcatggggcagggccaccctacgggcctcacgccg 160 |||| |||||| |||||||||||||| ||||||||||| ||||| ||||||||||| || Sbjct: 161 cgcgtcaacgtgcagcagctcaagctgatggggcagggacacccgacgggcctcaccccc 220 Query: 161 aacctgctcaagctgttcgaggcgcggcctatgctcgagcacaagccgcccgtccagaag 220 |||||||||||||| |||||| | || || |||||| ||||||||||||| ||||| Sbjct: 221 aacctgctcaagctcttcgagccccgcccgccgctcgacttcaagccgcccgtcgagaag 280 Query: 221 cgcaagttgccggcctacacggggatggcgcagtttgtgtcgcggtttgccgagcctggc 280 |||||||||||||||||||| |||||||||||||| ||||||| |||||| ||||| || Sbjct: 281 cgcaagttgccggcctacactgggatggcgcagttcgtgtcgcagtttgcggagcccggt 340 Query: 281 gacccagagtatgcgccgcctgtcccaacgtgcgagactaaggccgaaaagaaggataga 340 ||||| ||||| ||||| || ||||| || |||||||| ||||| |||||||||||||| Sbjct: 341 gaccctgagtacgcgccacccgtccccacatgcgagaccaaggctgaaaagaaggatagg 400 Query: 341 atcaggaaacttaagcttgagcaaggtgcagataaggtggccaaagagcttcagaactat 400 ||| | ||| ||||||||| |||||||| | ||||||||| ||||||||||||| ||| Sbjct: 401 atccgcaaaagtaagcttgaccaaggtgcggctaaggtggctgaagagcttcagaaatat 460 Query: 401 aacccacaaagtgatcccaataccacttcagatccgtacaaaacactcttcgttgcaaga 460 ||||||| ||||| |||||| ||||| |||||| |||||||||||||| ||||||||| Sbjct: 461 gacccacagagtgaccccaatgccactggagatccatacaaaacactctttgttgcaaga 520 Query: 461 cttaattacgagacatctgagagtagggttaagcgggagtttgaagcctatgggcctatt 520 ||||| || ||||| |||||| |||||| ||||||||||||||||| |||||||||||| Sbjct: 521 cttaactatgagacgtctgagcatagggtcaagcgggagtttgaagcttatgggcctatt 580 Query: 521 aaaagggta 529 ||||||||| Sbjct: 581 aaaagggta 589 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Plus Query: 26 atgggcgaccacggcaacgcgatgacgaggggcaacccggacggcggc 73 ||||||||| |||||| || ||||| | |||| ||||||||||||||| Sbjct: 86 atgggcgactacggcagcgggatgatgcgggggaacccggacggcggc 133
>dbj|AK121007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023046L24, full insert sequence Length = 1798 Score = 391 bits (197), Expect = e-105 Identities = 371/429 (86%) Strand = Plus / Plus Query: 101 cgcgccaacgtccagcagctcaagctcatggggcagggccaccctacgggcctcacgccg 160 |||| |||||| |||||||||||||| ||||||||||| ||||| ||||||||||| || Sbjct: 161 cgcgtcaacgtgcagcagctcaagctgatggggcagggacacccgacgggcctcaccccc 220 Query: 161 aacctgctcaagctgttcgaggcgcggcctatgctcgagcacaagccgcccgtccagaag 220 |||||||||||||| |||||| | || || |||||| ||||||||||||| ||||| Sbjct: 221 aacctgctcaagctcttcgagccccgcccgccgctcgacttcaagccgcccgtcgagaag 280 Query: 221 cgcaagttgccggcctacacggggatggcgcagtttgtgtcgcggtttgccgagcctggc 280 |||||||||||||||||||| |||||||||||||| ||||||| |||||| ||||| || Sbjct: 281 cgcaagttgccggcctacactgggatggcgcagttcgtgtcgcagtttgcggagcccggt 340 Query: 281 gacccagagtatgcgccgcctgtcccaacgtgcgagactaaggccgaaaagaaggataga 340 ||||| ||||| ||||| || ||||| || |||||||| ||||| |||||||||||||| Sbjct: 341 gaccctgagtacgcgccacccgtccccacatgcgagaccaaggctgaaaagaaggatagg 400 Query: 341 atcaggaaacttaagcttgagcaaggtgcagataaggtggccaaagagcttcagaactat 400 ||| | ||| ||||||||| |||||||| | ||||||||| ||||||||||||| ||| Sbjct: 401 atccgcaaaagtaagcttgaccaaggtgcggctaaggtggctgaagagcttcagaaatat 460 Query: 401 aacccacaaagtgatcccaataccacttcagatccgtacaaaacactcttcgttgcaaga 460 ||||||| ||||| |||||| ||||| |||||| |||||||||||||| ||||||||| Sbjct: 461 gacccacagagtgaccccaatgccactggagatccatacaaaacactctttgttgcaaga 520 Query: 461 cttaattacgagacatctgagagtagggttaagcgggagtttgaagcctatgggcctatt 520 ||||| || ||||| |||||| |||||| ||||||||||||||||| |||||||||||| Sbjct: 521 cttaactatgagacgtctgagcatagggtcaagcgggagtttgaagcttatgggcctatt 580 Query: 521 aaaagggta 529 ||||||||| Sbjct: 581 aaaagggta 589 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Plus Query: 26 atgggcgaccacggcaacgcgatgacgaggggcaacccggacggcggc 73 ||||||||| |||||| || ||||| | |||| ||||||||||||||| Sbjct: 86 atgggcgactacggcagcgggatgatgcgggggaacccggacggcggc 133
>dbj|AK059504.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A09, full insert sequence Length = 1796 Score = 391 bits (197), Expect = e-105 Identities = 371/429 (86%) Strand = Plus / Plus Query: 101 cgcgccaacgtccagcagctcaagctcatggggcagggccaccctacgggcctcacgccg 160 |||| |||||| |||||||||||||| ||||||||||| ||||| ||||||||||| || Sbjct: 160 cgcgtcaacgtgcagcagctcaagctgatggggcagggacacccgacgggcctcaccccc 219 Query: 161 aacctgctcaagctgttcgaggcgcggcctatgctcgagcacaagccgcccgtccagaag 220 |||||||||||||| |||||| | || || |||||| ||||||||||||| ||||| Sbjct: 220 aacctgctcaagctcttcgagccccgcccgccgctcgacttcaagccgcccgtcgagaag 279 Query: 221 cgcaagttgccggcctacacggggatggcgcagtttgtgtcgcggtttgccgagcctggc 280 |||||||||||||||||||| |||||||||||||| ||||||| |||||| ||||| || Sbjct: 280 cgcaagttgccggcctacactgggatggcgcagttcgtgtcgcagtttgcggagcccggt 339 Query: 281 gacccagagtatgcgccgcctgtcccaacgtgcgagactaaggccgaaaagaaggataga 340 ||||| ||||| ||||| || ||||| || |||||||| ||||| |||||||||||||| Sbjct: 340 gaccctgagtacgcgccacccgtccccacatgcgagaccaaggctgaaaagaaggatagg 399 Query: 341 atcaggaaacttaagcttgagcaaggtgcagataaggtggccaaagagcttcagaactat 400 ||| | ||| ||||||||| |||||||| | ||||||||| ||||||||||||| ||| Sbjct: 400 atccgcaaaagtaagcttgaccaaggtgcggctaaggtggctgaagagcttcagaaatat 459 Query: 401 aacccacaaagtgatcccaataccacttcagatccgtacaaaacactcttcgttgcaaga 460 ||||||| ||||| |||||| ||||| |||||| |||||||||||||| ||||||||| Sbjct: 460 gacccacagagtgaccccaatgccactggagatccatacaaaacactctttgttgcaaga 519 Query: 461 cttaattacgagacatctgagagtagggttaagcgggagtttgaagcctatgggcctatt 520 ||||| || ||||| |||||| |||||| ||||||||||||||||| |||||||||||| Sbjct: 520 cttaactatgagacgtctgagcatagggtcaagcgggagtttgaagcttatgggcctatt 579 Query: 521 aaaagggta 529 ||||||||| Sbjct: 580 aaaagggta 588 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Plus Query: 26 atgggcgaccacggcaacgcgatgacgaggggcaacccggacggcggc 73 ||||||||| |||||| || ||||| | |||| ||||||||||||||| Sbjct: 85 atgggcgactacggcagcgggatgatgcgggggaacccggacggcggc 132
>ref|NM_194601.1| Oryza sativa (japonica cultivar-group) putative U1 small nuclear ribonucleoprotein (OSJNBa0092N12.2), mRNA Length = 1476 Score = 385 bits (194), Expect = e-103 Identities = 368/426 (86%) Strand = Plus / Plus Query: 101 cgcgccaacgtccagcagctcaagctcatggggcagggccaccctacgggcctcacgccg 160 |||| |||||| |||||||||||||| ||||||||||| ||||| ||||||||||| || Sbjct: 76 cgcgtcaacgtgcagcagctcaagctgatggggcagggacacccgacgggcctcaccccc 135 Query: 161 aacctgctcaagctgttcgaggcgcggcctatgctcgagcacaagccgcccgtccagaag 220 |||||||||||||| |||||| | || || |||||| ||||||||||||| ||||| Sbjct: 136 aacctgctcaagctcttcgagccccgcccgccgctcgacttcaagccgcccgtcgagaag 195 Query: 221 cgcaagttgccggcctacacggggatggcgcagtttgtgtcgcggtttgccgagcctggc 280 |||||||||||||||||||| |||||||||||||| ||||||| |||||| ||||| || Sbjct: 196 cgcaagttgccggcctacactgggatggcgcagttcgtgtcgcagtttgcggagcccggt 255 Query: 281 gacccagagtatgcgccgcctgtcccaacgtgcgagactaaggccgaaaagaaggataga 340 ||||| ||||| ||||| || ||||| || |||||||| ||||| |||||||||||||| Sbjct: 256 gaccctgagtacgcgccacccgtccccacatgcgagaccaaggctgaaaagaaggatagg 315 Query: 341 atcaggaaacttaagcttgagcaaggtgcagataaggtggccaaagagcttcagaactat 400 ||| | ||| ||||||||| |||||||| | ||||||||| ||||||||||||| ||| Sbjct: 316 atccgcaaaagtaagcttgaccaaggtgcggctaaggtggctgaagagcttcagaaatat 375 Query: 401 aacccacaaagtgatcccaataccacttcagatccgtacaaaacactcttcgttgcaaga 460 ||||||| ||||| |||||| ||||| |||||| |||||||||||||| ||||||||| Sbjct: 376 gacccacagagtgaccccaatgccactggagatccatacaaaacactctttgttgcaaga 435 Query: 461 cttaattacgagacatctgagagtagggttaagcgggagtttgaagcctatgggcctatt 520 ||||| || ||||| |||||| |||||| ||||||||||||||||| |||||||||||| Sbjct: 436 cttaactatgagacgtctgagcatagggtcaagcgggagtttgaagcttatgggcctatt 495 Query: 521 aaaagg 526 |||||| Sbjct: 496 aaaagg 501 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Plus Query: 26 atgggcgaccacggcaacgcgatgacgaggggcaacccggacggcggc 73 ||||||||| |||||| || ||||| | |||| ||||||||||||||| Sbjct: 1 atgggcgactacggcagcgggatgatgcgggggaacccggacggcggc 48
>gb|DQ019633.1| Triticum aestivum U1 snRNP-interacting 70 kDa protein (U1-70K) mRNA, complete cds Length = 1729 Score = 313 bits (158), Expect = 4e-82 Identities = 350/414 (84%) Strand = Plus / Plus Query: 116 cagctcaagctcatggggcagggccaccctacgggcctcacgccgaacctgctcaagctg 175 |||||||||||||| |||||| |||| || ||||| || ||| |||||||||| |||||| Sbjct: 117 cagctcaagctcatcgggcagagccatccgacggggctgacgacgaacctgctgaagctg 176 Query: 176 ttcgaggcgcggcctatgctcgagcacaagccgcccgtccagaagcgcaagttgccggcc 235 |||||| | ||||| |||||||||||||||||| || ||||||||||||||||||| Sbjct: 177 ttcgagccacggccaccgctcgagcacaagccgccgctcgagaagcgcaagttgccggct 236 Query: 236 tacacggggatggcgcagtttgtgtcgcggtttgccgagcctggcgacccagagtatgcg 295 ||| | || ||| |||||||||| ||| |||| || |||||||| ||||| |||||||| Sbjct: 237 tactctggaatgtcgcagtttgtatcgaggttcgcagagcctggtgaccccgagtatgct 296 Query: 296 ccgcctgtcccaacgtgcgagactaaggccgaaaagaaggatagaatcaggaaacttaag 355 ||||||||||| || |||||||||| ||| |||||||||||||||||| | |||||||| Sbjct: 297 ccgcctgtccccacatgcgagactagggctgaaaagaaggatagaatccgtcaacttaag 356 Query: 356 cttgagcaaggtgcagataaggtggccaaagagcttcagaactataacccacaaagtgat 415 |||||| ||||||||| |||||| || ||||||| ||||| ||| ||||||||| ||| Sbjct: 357 cttgaggaaggtgcagctaaggttgctgaagagctccagaagtatgacccacaaaatgac 416 Query: 416 cccaataccacttcagatccgtacaaaacactcttcgttgcaagacttaattacgagaca 475 |||||| |||| |||||| |||||||||||||| |||||| ||||| ||||||||| Sbjct: 417 cccaatgtcactggagatccatacaaaacactctttgttgcacgacttggctacgagaca 476 Query: 476 tctgagagtagggttaagcgggagtttgaagcctatgggcctattaaaagggta 529 || ||| | |||||| |||| |||||||| ||||||||||||||||||||| Sbjct: 477 tccgagcagaaggttaaaagggactttgaagcttatgggcctattaaaagggta 530
>gb|AY627768.1| Zea mays U1 snRNP mRNA, complete cds; alternatively spliced Length = 3299 Score = 244 bits (123), Expect = 3e-61 Identities = 348/423 (82%) Strand = Plus / Plus Query: 107 aacgtccagcagctcaagctcatggggcagggccaccctacgggcctcacgccgaacctg 166 |||||||||||||||||||||||||||||| |||||| ||||| |||||||| |||||| Sbjct: 128 aacgtccagcagctcaagctcatggggcagatccacccgacggggctcacgcccaacctg 187 Query: 167 ctcaagctgttcgaggcgcggcctatgctcgagcacaagccgcccgtccagaagcgcaag 226 || ||||| ||||| |||| || ||||||| ||||||| || | |||||||||| Sbjct: 188 cttaagctcttcgaaccgcgtccaccgctcgagtacaagcccccgctggagaagcgcaaa 247 Query: 227 ttgccggcctacacggggatggcgcagtttgtgtcgcggtttgccgagcctggcgaccca 286 |||||||||||||| ||||||||||| |||||||| | ||||| ||||| | || ||| Sbjct: 248 ttgccggcctacaccgggatggcgcaatttgtgtctcactttgctgagcccgaggatcca 307 Query: 287 gagtatgcgccgcctgtcccaacgtgcgagactaaggccgaaaagaaggatagaatcagg 346 |||||||| ||||| || || | ||| ||||| | ||| || ||||||| |||||| | Sbjct: 308 gagtatgctccgccagtacccaagtgtgagaccagggcagagaagaaggctagaattcgc 367 Query: 347 aaacttaagcttgagcaaggtgcagataaggtggccaaagagcttcagaactataaccca 406 || |||||| |||||||| |||| |||||| || ||||||||||||| ||| ||||| Sbjct: 368 aataataagctcgagcaaggcgcagctaaggttgctgaagagcttcagaagtatgaccca 427 Query: 407 caaagtgatcccaataccacttcagatccgtacaaaacactcttcgttgcaagacttaat 466 |||||||| |||||| | ||| |||||| |||||||||||||| ||||| |||||||| Sbjct: 428 caaagtgaccccaatgctactggagatccatacaaaacactctttgttgctagacttaac 487 Query: 467 tacgagacatctgagagtagggttaagcgggagtttgaagcctatgggcctattaaaagg 526 || |||||||||||| ||| | || || |||||||||| ||||| |||||||||||| Sbjct: 488 tatgagacatctgagcagaggatcaaacgcgagtttgaaggttatggtcctattaaaagg 547 Query: 527 gta 529 ||| Sbjct: 548 gta 550
>gb|AY627767.1| Zea mays U1 snRNP mRNA, complete cds; alternatively spliced Length = 3463 Score = 244 bits (123), Expect = 3e-61 Identities = 348/423 (82%) Strand = Plus / Plus Query: 107 aacgtccagcagctcaagctcatggggcagggccaccctacgggcctcacgccgaacctg 166 |||||||||||||||||||||||||||||| |||||| ||||| |||||||| |||||| Sbjct: 128 aacgtccagcagctcaagctcatggggcagatccacccgacggggctcacgcccaacctg 187 Query: 167 ctcaagctgttcgaggcgcggcctatgctcgagcacaagccgcccgtccagaagcgcaag 226 || ||||| ||||| |||| || ||||||| ||||||| || | |||||||||| Sbjct: 188 cttaagctcttcgaaccgcgtccaccgctcgagtacaagcccccgctggagaagcgcaaa 247 Query: 227 ttgccggcctacacggggatggcgcagtttgtgtcgcggtttgccgagcctggcgaccca 286 |||||||||||||| ||||||||||| |||||||| | ||||| ||||| | || ||| Sbjct: 248 ttgccggcctacaccgggatggcgcaatttgtgtctcactttgctgagcccgaggatcca 307 Query: 287 gagtatgcgccgcctgtcccaacgtgcgagactaaggccgaaaagaaggatagaatcagg 346 |||||||| ||||| || || | ||| ||||| | ||| || ||||||| |||||| | Sbjct: 308 gagtatgctccgccagtacccaagtgtgagaccagggcagagaagaaggctagaattcgc 367 Query: 347 aaacttaagcttgagcaaggtgcagataaggtggccaaagagcttcagaactataaccca 406 || |||||| |||||||| |||| |||||| || ||||||||||||| ||| ||||| Sbjct: 368 aataataagctcgagcaaggcgcagctaaggttgctgaagagcttcagaagtatgaccca 427 Query: 407 caaagtgatcccaataccacttcagatccgtacaaaacactcttcgttgcaagacttaat 466 |||||||| |||||| | ||| |||||| |||||||||||||| ||||| |||||||| Sbjct: 428 caaagtgaccccaatgctactggagatccatacaaaacactctttgttgctagacttaac 487 Query: 467 tacgagacatctgagagtagggttaagcgggagtttgaagcctatgggcctattaaaagg 526 || |||||||||||| ||| | || || |||||||||| ||||| |||||||||||| Sbjct: 488 tatgagacatctgagcagaggatcaaacgcgagtttgaaggttatggtcctattaaaagg 547 Query: 527 gta 529 ||| Sbjct: 548 gta 550
>gb|AY627766.1| Zea mays U1 snRNP mRNA, complete cds; alternatively spliced Length = 1647 Score = 242 bits (122), Expect = 1e-60 Identities = 347/422 (82%) Strand = Plus / Plus Query: 107 aacgtccagcagctcaagctcatggggcagggccaccctacgggcctcacgccgaacctg 166 |||||||||||||||||||||||||||||| |||||| ||||| |||||||| |||||| Sbjct: 128 aacgtccagcagctcaagctcatggggcagatccacccgacggggctcacgcccaacctg 187 Query: 167 ctcaagctgttcgaggcgcggcctatgctcgagcacaagccgcccgtccagaagcgcaag 226 || ||||| ||||| |||| || ||||||| ||||||| || | |||||||||| Sbjct: 188 cttaagctcttcgaaccgcgtccaccgctcgagtacaagcccccgctggagaagcgcaaa 247 Query: 227 ttgccggcctacacggggatggcgcagtttgtgtcgcggtttgccgagcctggcgaccca 286 |||||||||||||| ||||||||||| |||||||| | ||||| ||||| | || ||| Sbjct: 248 ttgccggcctacaccgggatggcgcaatttgtgtctcactttgctgagcccgaggatcca 307 Query: 287 gagtatgcgccgcctgtcccaacgtgcgagactaaggccgaaaagaaggatagaatcagg 346 |||||||| ||||| || || | ||| ||||| | ||| || ||||||| |||||| | Sbjct: 308 gagtatgctccgccagtacccaagtgtgagaccagggcagagaagaaggctagaattcgc 367 Query: 347 aaacttaagcttgagcaaggtgcagataaggtggccaaagagcttcagaactataaccca 406 || |||||| |||||||| |||| |||||| || ||||||||||||| ||| ||||| Sbjct: 368 aataataagctcgagcaaggcgcagctaaggttgctgaagagcttcagaagtatgaccca 427 Query: 407 caaagtgatcccaataccacttcagatccgtacaaaacactcttcgttgcaagacttaat 466 |||||||| |||||| | ||| |||||| |||||||||||||| ||||| |||||||| Sbjct: 428 caaagtgaccccaatgctactggagatccatacaaaacactctttgttgctagacttaac 487 Query: 467 tacgagacatctgagagtagggttaagcgggagtttgaagcctatgggcctattaaaagg 526 || |||||||||||| ||| | || || |||||||||| ||||| |||||||||||| Sbjct: 488 tatgagacatctgagcagaggatcaaacgcgagtttgaaggttatggtcctattaaaagg 547 Query: 527 gt 528 || Sbjct: 548 gt 549
>gb|AC078891.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0092N12, complete sequence Length = 109198 Score = 121 bits (61), Expect = 3e-24 Identities = 91/101 (90%) Strand = Plus / Plus Query: 470 gagacatctgagagtagggttaagcgggagtttgaagcctatgggcctattaaaagggta 529 ||||| |||||| |||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 12321 gagacgtctgagcatagggtcaagcgggagtttgaagcttatgggcctattaaaagggta 12380 Query: 530 ggtgcatgtggtaaatcccagtacaggtggagttattcctc 570 || |||||||||||| ||||| |||||||| ||||||||| Sbjct: 12381 agtacatgtggtaaattccagtgcaggtggacttattcctc 12421 Score = 105 bits (53), Expect = 2e-19 Identities = 98/113 (86%) Strand = Plus / Plus Query: 128 atggggcagggccaccctacgggcctcacgccgaacctgctcaagctgttcgaggcgcgg 187 ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||| | || Sbjct: 10926 atggggcagggacacccgacgggcctcacccccaacctgctcaagctcttcgagccccgc 10985 Query: 188 cctatgctcgagcacaagccgcccgtccagaagcgcaagttgccggcctacac 240 || |||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 10986 ccgccgctcgacttcaagccgcccgtcgagaagcgcaagttgccggcctacac 11038 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 402 acccacaaagtgatcccaataccacttcagatccgtacaaaacactcttcgttgcaagac 461 ||||||| ||||| |||||| ||||| |||||| |||||||||||||| |||||||||| Sbjct: 12154 acccacagagtgaccccaatgccactggagatccatacaaaacactctttgttgcaagac 12213 Query: 462 tt 463 || Sbjct: 12214 tt 12215 Score = 67.9 bits (34), Expect = 4e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 242 gggatggcgcagtttgtgtcgcggtttgccgagcctggcgacccagagtatgcgccgcct 301 |||||||||||||| ||||||| |||||| ||||| || ||||| ||||| ||||| || Sbjct: 11200 gggatggcgcagttcgtgtcgcagtttgcggagcccggtgaccctgagtacgcgccaccc 11259 Query: 302 gtcccaacgtgcgagactaagg 323 ||||| || |||||||| |||| Sbjct: 11260 gtccccacatgcgagaccaagg 11281 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 321 aggccgaaaagaaggatagaatcaggaaacttaagcttgagcaaggtgcagataaggtgg 380 |||| |||||||||||||| ||| | ||| ||||||||| |||||||| | |||||||| Sbjct: 11992 aggctgaaaagaaggataggatccgcaaaagtaagcttgaccaaggtgcggctaaggtgg 12051 Query: 381 ccaaagagcttcagaa 396 | ||||||||||||| Sbjct: 12052 ctgaagagcttcagaa 12067 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Plus Query: 26 atgggcgaccacggcaacgcgatgacgaggggcaacccggacggcggc 73 ||||||||| |||||| || ||||| | |||| ||||||||||||||| Sbjct: 10724 atgggcgactacggcagcgggatgatgcgggggaacccggacggcggc 10771
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 121 bits (61), Expect = 3e-24 Identities = 91/101 (90%) Strand = Plus / Minus Query: 470 gagacatctgagagtagggttaagcgggagtttgaagcctatgggcctattaaaagggta 529 ||||| |||||| |||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 990233 gagacgtctgagcatagggtcaagcgggagtttgaagcttatgggcctattaaaagggta 990174 Query: 530 ggtgcatgtggtaaatcccagtacaggtggagttattcctc 570 || |||||||||||| ||||| |||||||| ||||||||| Sbjct: 990173 agtacatgtggtaaattccagtgcaggtggacttattcctc 990133 Score = 105 bits (53), Expect = 2e-19 Identities = 98/113 (86%) Strand = Plus / Minus Query: 128 atggggcagggccaccctacgggcctcacgccgaacctgctcaagctgttcgaggcgcgg 187 ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||| | || Sbjct: 991628 atggggcagggacacccgacgggcctcacccccaacctgctcaagctcttcgagccccgc 991569 Query: 188 cctatgctcgagcacaagccgcccgtccagaagcgcaagttgccggcctacac 240 || |||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 991568 ccgccgctcgacttcaagccgcccgtcgagaagcgcaagttgccggcctacac 991516 Score = 67.9 bits (34), Expect = 4e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 242 gggatggcgcagtttgtgtcgcggtttgccgagcctggcgacccagagtatgcgccgcct 301 |||||||||||||| ||||||| |||||| ||||| || ||||| ||||| ||||| || Sbjct: 991354 gggatggcgcagttcgtgtcgcagtttgcggagcccggtgaccctgagtacgcgccaccc 991295 Query: 302 gtcccaacgtgcgagactaagg 323 ||||| || |||||||| |||| Sbjct: 991294 gtccccacatgcgagaccaagg 991273 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 402 acccacaaagtgatcccaataccacttcagatccgtacaaaacactcttcgttgcaagac 461 ||||||| ||||| |||||| ||||| |||||| |||||||||||||| |||||||||| Sbjct: 990400 acccacagagtgaccccaatgccactggagatccatacaaaacactctttgttgcaagac 990341 Query: 462 tt 463 || Sbjct: 990340 tt 990339 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/76 (85%) Strand = Plus / Minus Query: 321 aggccgaaaagaaggatagaatcaggaaacttaagcttgagcaaggtgcagataaggtgg 380 |||| |||||||||||||| ||| | ||| ||||||||| |||||||| | |||||||| Sbjct: 990562 aggctgaaaagaaggataggatccgcaaaagtaagcttgaccaaggtgcggctaaggtgg 990503 Query: 381 ccaaagagcttcagaa 396 | ||||||||||||| Sbjct: 990502 ctgaagagcttcagaa 990487 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 26 atgggcgaccacggcaacgcgatgacgaggggcaacccggacggcggc 73 ||||||||| |||||| || ||||| | |||| ||||||||||||||| Sbjct: 991830 atgggcgactacggcagcgggatgatgcgggggaacccggacggcggc 991783
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 121 bits (61), Expect = 3e-24 Identities = 91/101 (90%) Strand = Plus / Minus Query: 470 gagacatctgagagtagggttaagcgggagtttgaagcctatgggcctattaaaagggta 529 ||||| |||||| |||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 990233 gagacgtctgagcatagggtcaagcgggagtttgaagcttatgggcctattaaaagggta 990174 Query: 530 ggtgcatgtggtaaatcccagtacaggtggagttattcctc 570 || |||||||||||| ||||| |||||||| ||||||||| Sbjct: 990173 agtacatgtggtaaattccagtgcaggtggacttattcctc 990133 Score = 105 bits (53), Expect = 2e-19 Identities = 98/113 (86%) Strand = Plus / Minus Query: 128 atggggcagggccaccctacgggcctcacgccgaacctgctcaagctgttcgaggcgcgg 187 ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||| | || Sbjct: 991628 atggggcagggacacccgacgggcctcacccccaacctgctcaagctcttcgagccccgc 991569 Query: 188 cctatgctcgagcacaagccgcccgtccagaagcgcaagttgccggcctacac 240 || |||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 991568 ccgccgctcgacttcaagccgcccgtcgagaagcgcaagttgccggcctacac 991516 Score = 67.9 bits (34), Expect = 4e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 242 gggatggcgcagtttgtgtcgcggtttgccgagcctggcgacccagagtatgcgccgcct 301 |||||||||||||| ||||||| |||||| ||||| || ||||| ||||| ||||| || Sbjct: 991354 gggatggcgcagttcgtgtcgcagtttgcggagcccggtgaccctgagtacgcgccaccc 991295 Query: 302 gtcccaacgtgcgagactaagg 323 ||||| || |||||||| |||| Sbjct: 991294 gtccccacatgcgagaccaagg 991273 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 402 acccacaaagtgatcccaataccacttcagatccgtacaaaacactcttcgttgcaagac 461 ||||||| ||||| |||||| ||||| |||||| |||||||||||||| |||||||||| Sbjct: 990400 acccacagagtgaccccaatgccactggagatccatacaaaacactctttgttgcaagac 990341 Query: 462 tt 463 || Sbjct: 990340 tt 990339 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/76 (85%) Strand = Plus / Minus Query: 321 aggccgaaaagaaggatagaatcaggaaacttaagcttgagcaaggtgcagataaggtgg 380 |||| |||||||||||||| ||| | ||| ||||||||| |||||||| | |||||||| Sbjct: 990562 aggctgaaaagaaggataggatccgcaaaagtaagcttgaccaaggtgcggctaaggtgg 990503 Query: 381 ccaaagagcttcagaa 396 | ||||||||||||| Sbjct: 990502 ctgaagagcttcagaa 990487 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 26 atgggcgaccacggcaacgcgatgacgaggggcaacccggacggcggc 73 ||||||||| |||||| || ||||| | |||| ||||||||||||||| Sbjct: 991830 atgggcgactacggcagcgggatgatgcgggggaacccggacggcggc 991783
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 121 bits (61), Expect = 3e-24 Identities = 91/101 (90%) Strand = Plus / Minus Query: 470 gagacatctgagagtagggttaagcgggagtttgaagcctatgggcctattaaaagggta 529 ||||| |||||| |||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 990230 gagacgtctgagcatagggtcaagcgggagtttgaagcttatgggcctattaaaagggta 990171 Query: 530 ggtgcatgtggtaaatcccagtacaggtggagttattcctc 570 || |||||||||||| ||||| |||||||| ||||||||| Sbjct: 990170 agtacatgtggtaaattccagtgcaggtggacttattcctc 990130 Score = 105 bits (53), Expect = 2e-19 Identities = 98/113 (86%) Strand = Plus / Minus Query: 128 atggggcagggccaccctacgggcctcacgccgaacctgctcaagctgttcgaggcgcgg 187 ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||| | || Sbjct: 991625 atggggcagggacacccgacgggcctcacccccaacctgctcaagctcttcgagccccgc 991566 Query: 188 cctatgctcgagcacaagccgcccgtccagaagcgcaagttgccggcctacac 240 || |||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 991565 ccgccgctcgacttcaagccgcccgtcgagaagcgcaagttgccggcctacac 991513 Score = 67.9 bits (34), Expect = 4e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 242 gggatggcgcagtttgtgtcgcggtttgccgagcctggcgacccagagtatgcgccgcct 301 |||||||||||||| ||||||| |||||| ||||| || ||||| ||||| ||||| || Sbjct: 991351 gggatggcgcagttcgtgtcgcagtttgcggagcccggtgaccctgagtacgcgccaccc 991292 Query: 302 gtcccaacgtgcgagactaagg 323 ||||| || |||||||| |||| Sbjct: 991291 gtccccacatgcgagaccaagg 991270 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 402 acccacaaagtgatcccaataccacttcagatccgtacaaaacactcttcgttgcaagac 461 ||||||| ||||| |||||| ||||| |||||| |||||||||||||| |||||||||| Sbjct: 990397 acccacagagtgaccccaatgccactggagatccatacaaaacactctttgttgcaagac 990338 Query: 462 tt 463 || Sbjct: 990337 tt 990336 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/76 (85%) Strand = Plus / Minus Query: 321 aggccgaaaagaaggatagaatcaggaaacttaagcttgagcaaggtgcagataaggtgg 380 |||| |||||||||||||| ||| | ||| ||||||||| |||||||| | |||||||| Sbjct: 990559 aggctgaaaagaaggataggatccgcaaaagtaagcttgaccaaggtgcggctaaggtgg 990500 Query: 381 ccaaagagcttcagaa 396 | ||||||||||||| Sbjct: 990499 ctgaagagcttcagaa 990484 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 26 atgggcgaccacggcaacgcgatgacgaggggcaacccggacggcggc 73 ||||||||| |||||| || ||||| | |||| ||||||||||||||| Sbjct: 991827 atgggcgactacggcagcgggatgatgcgggggaacccggacggcggc 991780
>gb|AY627765.1| Zea mays U1 snRNP gene, complete cds; alternatively spliced Length = 5550 Score = 65.9 bits (33), Expect = 1e-07 Identities = 93/113 (82%) Strand = Plus / Plus Query: 128 atggggcagggccaccctacgggcctcacgccgaacctgctcaagctgttcgaggcgcgg 187 ||||||||| |||||| ||||| |||||||| |||||||| ||||| ||||| |||| Sbjct: 275 atggggcagatccacccgacggggctcacgcccaacctgcttaagctcttcgaaccgcgt 334 Query: 188 cctatgctcgagcacaagccgcccgtccagaagcgcaagttgccggcctacac 240 || ||||||| ||||||| || | |||||||||| |||||||||||||| Sbjct: 335 ccaccgctcgagtacaagcccccgctggagaagcgcaaattgccggcctacac 387 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 402 acccacaaagtgatcccaataccacttcagatccgtacaaaacactcttcgttgcaagac 461 ||||||||||||| |||||| | ||| |||||| |||||||||||||| ||||| |||| Sbjct: 1260 acccacaaagtgaccccaatgctactggagatccatacaaaacactctttgttgctagac 1319 Query: 462 tt 463 || Sbjct: 1320 tt 1321 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 497 gagtttgaagcctatgggcctattaaaagggta 529 |||||||||| ||||| ||||||||||||||| Sbjct: 1474 gagtttgaaggttatggtcctattaaaagggta 1506 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Plus Query: 352 taagcttgagcaaggtgcagataaggtggccaaagagcttcagaa 396 |||||| |||||||| |||| |||||| || ||||||||||||| Sbjct: 1125 taagctcgagcaaggcgcagctaaggttgctgaagagcttcagaa 1169 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 aacgtccagcagctcaagctc 127 ||||||||||||||||||||| Sbjct: 160 aacgtccagcagctcaagctc 180
>ref|NM_180345.1| Arabidopsis thaliana U1-70K (SPLICEOSOMAL PROTEIN U1A); RNA binding AT3G50670 (U1-70K) transcript variant AT3G50670.2 mRNA, complete cds Length = 2424 Score = 54.0 bits (27), Expect = 5e-04 Identities = 84/103 (81%) Strand = Plus / Plus Query: 430 agatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtagggt 489 |||||| ||||| ||| | |||||| |||||||||| ||||| | || ||||||| | | Sbjct: 486 agatccatacaagacattgttcgtttcaagacttaactacgaatcctcagagagtaagat 545 Query: 490 taagcgggagtttgaagcctatgggcctattaaaagggtaggt 532 ||| ||||||||||| | ||||| || |||||| |||||||| Sbjct: 546 taaaagggagtttgaatcttatggaccaattaaacgggtaggt 588
>gb|U52910.1|ATU52910 Arabidopsis thaliana U1 snRNP 70K truncated protein mRNA, long alternatively spliced transcript, complete cds Length = 2425 Score = 54.0 bits (27), Expect = 5e-04 Identities = 84/103 (81%) Strand = Plus / Plus Query: 430 agatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtagggt 489 |||||| ||||| ||| | |||||| |||||||||| ||||| | || ||||||| | | Sbjct: 486 agatccatacaagacattgttcgtttcaagacttaactacgaatcctcagagagtaagat 545 Query: 490 taagcgggagtttgaagcctatgggcctattaaaagggtaggt 532 ||| ||||||||||| | ||||| || |||||| |||||||| Sbjct: 546 taaaagggagtttgaatcttatggaccaattaaacgggtaggt 588
>ref|NM_114927.2| Arabidopsis thaliana U1-70K (SPLICEOSOMAL PROTEIN U1A); RNA binding / nucleic acid binding AT3G50670 (U1-70K) transcript variant AT3G50670.1 mRNA, complete cds Length = 1555 Score = 46.1 bits (23), Expect = 0.13 Identities = 80/99 (80%) Strand = Plus / Plus Query: 430 agatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtagggt 489 |||||| ||||| ||| | |||||| |||||||||| ||||| | || ||||||| | | Sbjct: 497 agatccatacaagacattgttcgtttcaagacttaactacgaatcctcagagagtaagat 556 Query: 490 taagcgggagtttgaagcctatgggcctattaaaagggt 528 ||| ||||||||||| | ||||| || |||||| |||| Sbjct: 557 taaaagggagtttgaatcttatggaccaattaaacgggt 595
>gb|AY094003.1| Arabidopsis thaliana AT3g50670/T3A5_50 mRNA, complete cds Length = 1284 Score = 46.1 bits (23), Expect = 0.13 Identities = 80/99 (80%) Strand = Plus / Plus Query: 430 agatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtagggt 489 |||||| ||||| ||| | |||||| |||||||||| ||||| | || ||||||| | | Sbjct: 402 agatccatacaagacattgttcgtttcaagacttaactacgaatcctcagagagtaagat 461 Query: 490 taagcgggagtttgaagcctatgggcctattaaaagggt 528 ||| ||||||||||| | ||||| || |||||| |||| Sbjct: 462 taaaagggagtttgaatcttatggaccaattaaacgggt 500
>gb|AY039874.1| Arabidopsis thaliana AT3g50670/T3A5_50 mRNA, complete cds Length = 1483 Score = 46.1 bits (23), Expect = 0.13 Identities = 80/99 (80%) Strand = Plus / Plus Query: 430 agatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtagggt 489 |||||| ||||| ||| | |||||| |||||||||| ||||| | || ||||||| | | Sbjct: 459 agatccatacaagacattgttcgtttcaagacttaactacgaatcctcagagagtaagat 518 Query: 490 taagcgggagtttgaagcctatgggcctattaaaagggt 528 ||| ||||||||||| | ||||| || |||||| |||| Sbjct: 519 taaaagggagtttgaatcttatggaccaattaaacgggt 557
>gb|M93439.1|ATHRNU1 Arabidopsis thaliana 70kDa small nuclear ribonucleoprotein U1 (RNU1) mRNA, partial cds Length = 1465 Score = 46.1 bits (23), Expect = 0.13 Identities = 80/99 (80%) Strand = Plus / Plus Query: 430 agatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtagggt 489 |||||| ||||| ||| | |||||| |||||||||| ||||| | || ||||||| | | Sbjct: 425 agatccatacaagacattgttcgtttcaagacttaactacgaatcctcagagagtaagat 484 Query: 490 taagcgggagtttgaagcctatgggcctattaaaagggt 528 ||| ||||||||||| | ||||| || |||||| |||| Sbjct: 485 taaaagggagtttgaatcttatggaccaattaaacgggt 523
>emb|AL359738.7| Human DNA sequence from clone RP11-249D14 on chromosome 1 Contains part of a gene for a novel protein and 3' end of a novel gene, complete sequence Length = 77555 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 gggcagggccaccctacgggcc 152 |||||||||||||||||||||| Sbjct: 29062 gggcagggccaccctacgggcc 29041
>gb|AC183301.4| Pan troglodytes BAC clone CH251-243F23 from chromosome 19, complete sequence Length = 157473 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 376 ggtggccaaagagcttcagaa 396 ||||||||||||||||||||| Sbjct: 70399 ggtggccaaagagcttcagaa 70379 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 ggtggccaaagagcttcaga 395 |||||||||||||||||||| Sbjct: 89566 ggtggccaaagagcttcaga 89547 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 ggtggccaaagagcttcaga 395 |||||||||||||||||||| Sbjct: 6787 ggtggccaaagagcttcaga 6768
>gb|AC183545.2| Pan troglodytes BAC clone CH251-233G24 from chromosome 19, complete sequence Length = 151627 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 376 ggtggccaaagagcttcagaa 396 ||||||||||||||||||||| Sbjct: 95998 ggtggccaaagagcttcagaa 95978 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 ggtggccaaagagcttcaga 395 |||||||||||||||||||| Sbjct: 115167 ggtggccaaagagcttcaga 115148 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 ggtggccaaagagcttcaga 395 |||||||||||||||||||| Sbjct: 32386 ggtggccaaagagcttcaga 32367
>gb|AC119839.8| Mus musculus chromosome 1, clone RP24-170N13, complete sequence Length = 165405 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 cgtccagcagctcaagctca 128 |||||||||||||||||||| Sbjct: 32140 cgtccagcagctcaagctca 32159
>gb|AC183801.3| Pan troglodytes BAC clone CH251-162F3 from chromosome 19, complete sequence Length = 193838 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 ggtggccaaagagcttcaga 395 |||||||||||||||||||| Sbjct: 182552 ggtggccaaagagcttcaga 182533 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 ggtggccaaagagcttcaga 395 |||||||||||||||||||| Sbjct: 75068 ggtggccaaagagcttcaga 75049 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 ggtggccaaagagcttcaga 395 |||||||||||||||||||| Sbjct: 6830 ggtggccaaagagcttcaga 6811
>gb|AC005392.2| Homo sapiens chromosome 19 clone CTC-490G23, complete sequence Length = 243197 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 ggtggccaaagagcttcaga 395 |||||||||||||||||||| Sbjct: 114516 ggtggccaaagagcttcaga 114535 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 ggtggccaaagagcttcaga 395 |||||||||||||||||||| Sbjct: 50635 ggtggccaaagagcttcaga 50654 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 ggtggccaaagagcttcaga 395 |||||||||||||||||||| Sbjct: 31517 ggtggccaaagagcttcaga 31536
>gb|AC024077.2| Homo sapiens chromosome 19 clone LLNL-F_204C10, complete sequence Length = 42649 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 ggtggccaaagagcttcaga 395 |||||||||||||||||||| Sbjct: 17896 ggtggccaaagagcttcaga 17877
>gb|AC005791.1|AC005791 Homo sapiens chromosome 19, cosmid R26371, complete sequence Length = 39266 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 ggtggccaaagagcttcaga 395 |||||||||||||||||||| Sbjct: 5892 ggtggccaaagagcttcaga 5911
>gb|AC005238.1|AC005238 Homo sapiens chromosome 19, cosmid F25173, complete sequence Length = 43690 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 ggtggccaaagagcttcaga 395 |||||||||||||||||||| Sbjct: 4147 ggtggccaaagagcttcaga 4166
>gb|AC004784.1|AC004784 Homo sapiens chromosome 19, cosmid R26425, complete sequence Length = 44760 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 ggtggccaaagagcttcaga 395 |||||||||||||||||||| Sbjct: 6642 ggtggccaaagagcttcaga 6661
>gb|AC004654.1|AC004654 Homo sapiens chromosome 19, cosmid F19434, complete sequence Length = 42139 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 gtggccaaagagcttcagaa 396 |||||||||||||||||||| Sbjct: 32728 gtggccaaagagcttcagaa 32747 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 ggtggccaaagagcttcaga 395 |||||||||||||||||||| Sbjct: 7534 ggtggccaaagagcttcaga 7553 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,347,082 Number of Sequences: 3902068 Number of extensions: 3347082 Number of successful extensions: 52594 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52464 Number of HSP's gapped (non-prelim): 121 length of query: 586 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 563 effective length of database: 17,143,297,704 effective search space: 9651676607352 effective search space used: 9651676607352 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
